BAC Information

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BAC

Clone NameB6Ng01-104N03
Chromosome6 (Build37)
Map Location 97,723,503 - 97,850,705
singlet/doubletdoublet
Overlap geneLOC100043692
Upstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
Downstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N03.bB6Ng01-104N03.g
ACCDH913008DH913009
length8381,192
definitionDH913008|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N03, 5' end.DH913009|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,849,868 - 97,850,705)(97,723,503 - 97,724,715)
sequence
gaattcattaactccgttttaagaacaagttaaataagcttataaaaaaa
gtatactctgcatcacaaaagtatcatcttccagatagtatgtttgctca
ctgtaggaactaaaagcaagcaagatacaaaaaaccctccaccttgctta
tcatccccatgcaaacattctcaactctgcctctgttcctttcacaggtg
ccctgctctggacagtgtggcttcactggtctttgttggtggcttagctc
agctttacaactaaacttctacttctcagtgcagtaggttttcctgggaa
gaacgagacatggtacccacctggccaacttctcatcattaactgagcat
ttgctacctgctcagctgcaagctctgtgatggaaacaagagtgttccac
tgagcgggcctaaccaagaggatttcttagtttccaaatttgctctagct
gtagctttttttttttttactcttaagattaattactattttcattctag
ttctaagatttgttaaaaatacaaattatataaatagcacattcagaaaa
gaaaatggacttgtattgttaaacttctgcaaattacagcttcaacaatt
gcctcctagccttctgttggccatcatctaaaacattgtaccaccaaaat
taactacataaaccaaagctgcatctgaatatttctaagtaggagataca
tacgttaaaaacatcaggatgaataacctctattttccttccttttctca
tcttttcagcatggttattttgagtgtgtgtgtgtgtgtgtgtgtgtgtg
tgagtgaaggctgtattaaattgtgtgaaagattaaca
gaattcaacagttgttcggttcatgagaaaggatgtctctgagttccaag
ctgaacagatgtcctagaggaatcctggaaagctggtgattgtcagttta
tgttggaatcctgaagaagtaggttctaatgcagataaggaaatgcttta
ggaacagaatagatcgacttggacagtgagagtgaatgcccctacgataa
acccttgcaaatacagggatgtattggaagaactaggaggtgtggagaga
atggaaatctccacctccagacaactgggaaagagcctagagcttggtta
aaaaaaaggaccttgaacaggatggtgtggtacacctataattcctgcac
tgagctacatagcaagtacaaggacagcctgtgatcttggaaagagagag
gaagaaggcgagacgtggaacgacaagacactgaggaggaaatgagacct
tctgctggtctcttgatctcataggcacaagcagagatgtactgcagggg
tcctaaaatagggcatggtagcagttccctgaaacacacaactaaaccag
gaccaattaaatattcaacagatgcatcttgtgtttttgtttttcaagac
aaagttctctgtgtagccttggttgtcctgaaacttactctgtagaccag
gctggctttgaactcataaagatctgcctgcctctgtttccaagtgctgg
gattaaaggtgtgaaccatgcgccacaactggtgcatcttgtaatgagcc
agatctatggcccctgagaacatccaactttatcatctaattgtagattt
ctctacttataatgcatttccattagcccgaggtcttgagaatcttgtta
aacatcatgggccttgcctgctttcattttgtgttaactgtgtcccctga
cttaaagtgagtgatttgctgagaagtaatacacactgaagtctgtccct
tgatggttcttgggtcacatgtcaggtagacacatatttattatattatc
ctccaattttttcaggatgaaatgagaacactacaaaccaattaacaaca
atagacaacttcacattaaggacacacttgccagaatggatgaaatttaa
atgcaaggttaaataaagtagactgctcatgtggaagtgagtgtggtact
gctgaattctctcagaaccgagcacttgttctagttagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_97849868_97850705
seq2: B6Ng01-104N03.b_44_881 (reverse)

seq1  TGTTCATCTTTCCACACAATTTACTACAGCCTTTAGTCACACACACACAC  50
      |||| |||||| ||||||||||| ||||||||| | ||||||||||||||
seq2  TGTTAATCTTT-CACACAATTTAATACAGCCTTCACTCACACACACACAC  49

seq1  ACACACACACACACACTCAAAATAACCATGCTG-AAAGATGAGAAAAGGA  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACACACACACTCAAAATAACCATGCTGAAAAGATGAGAAAAGGA  99

seq1  AGGAAAATAGAGGTTATTCATCCTGATGTTTTTAACGTATGTATCTCCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAGAGGTTATTCATCCTGATGTTTTTAACGTATGTATCTCCTA  149

seq1  CTTAGAAATATTCAGATGCAGCTTTGGTTTATGTAGTTAATTTTGGTGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATATTCAGATGCAGCTTTGGTTTATGTAGTTAATTTTGGTGGT  199

seq1  ACAATGTTTTAGATGATGGCCAACAGAAGGCTAGGAGGCAATTGTTGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTTAGATGATGGCCAACAGAAGGCTAGGAGGCAATTGTTGAAG  249

seq1  CTGTAATTTGCAGAAGTTTAACAATACAAGTCCATTTTCTTTTCTGAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTGCAGAAGTTTAACAATACAAGTCCATTTTCTTTTCTGAATG  299

seq1  TGCTATTTATATAATTTGTATTTTTAACAAATCTTAGAACTAGAATGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTATATAATTTGTATTTTTAACAAATCTTAGAACTAGAATGAAA  349

seq1  ATAGTAATTAATCTTAAGAGTAAAAAAAAAAAAAGCTACAGCTAGAGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATTAATCTTAAGAGTAAAAAAAAAAAAAGCTACAGCTAGAGCAA  399

seq1  ATTTGGAAACTAAGAAATCCTCTTGGTTAGGCCCGCTCAGTGGAACACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAACTAAGAAATCCTCTTGGTTAGGCCCGCTCAGTGGAACACTC  449

seq1  TTGTTTCCATCACAGAGCTTGCAGCTGAGCAGGTAGCAAATGCTCAGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCATCACAGAGCTTGCAGCTGAGCAGGTAGCAAATGCTCAGTTA  499

seq1  ATGATGAGAAGTTGGCCAGGTGGGTACCATGTCTCGTTCTTCCCAGGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGAAGTTGGCCAGGTGGGTACCATGTCTCGTTCTTCCCAGGAAA  549

seq1  ACCTACTGCACTGAGAAGTAGAAGTTTAGTTGTAAAGCTGAGCTAAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGCACTGAGAAGTAGAAGTTTAGTTGTAAAGCTGAGCTAAGCCA  599

seq1  CCAACAAAGACCAGTGAAGCCACACTGTCCAGAGCAGGGCACCTGTGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAGACCAGTGAAGCCACACTGTCCAGAGCAGGGCACCTGTGAAA  649

seq1  GGAACAGAGGCAGAGTTGAGAATGTTTGCATGGGGATGATAAGCAAGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAGGCAGAGTTGAGAATGTTTGCATGGGGATGATAAGCAAGGTG  699

seq1  GAGGGTTTTTTGTATCTTGCTTGCTTTTAGTTCCTACAGTGAGCAAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTTTTGTATCTTGCTTGCTTTTAGTTCCTACAGTGAGCAAACAT  749

seq1  ACTATCTGGAAGATGATACTTTTGTGATGCAGAGTATACTTTTTTTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGGAAGATGATACTTTTGTGATGCAGAGTATACTTTTTTTATAA  799

seq1  GCTTATTTAACTTGTTCTTAAAACGGAGTTAATGAATTC  838
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTAACTTGTTCTTAAAACGGAGTTAATGAATTC  838

seq1: chr6_97723503_97724715
seq2: B6Ng01-104N03.g_68_1259

seq1  GAATTCAACAGTTGTTCGGTTCATGAGAAAGGATGTCTCTGAGTTCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTTGTTCGGTTCATGAGAAAGGATGTCTCTGAGTTCCAAG  50

seq1  CTGAACAGATGTCCTAGAGGAATCCTGGAAAGCTGGTGATTGTCAGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGATGTCCTAGAGGAATCCTGGAAAGCTGGTGATTGTCAGTTTA  100

seq1  TGTTGGAATCCTGAAGAAGTAGGTTCTAATGCAGATAAGGAAATGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAATCCTGAAGAAGTAGGTTCTAATGCAGATAAGGAAATGCTTTA  150

seq1  GGAACAGAATAGATCGACTTGGACAGTGAGAGTGAATGCCCCTACGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAATAGATCGACTTGGACAGTGAGAGTGAATGCCCCTACGATAA  200

seq1  ACCCTTGCAAATACAGGGATGTATTGGAAGAACTAGGAGGTGTGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGCAAATACAGGGATGTATTGGAAGAACTAGGAGGTGTGGAGAGA  250

seq1  ATGGAAATCTCCACCTCCAGACAACTGGGAAAGAGCCTAGAGCTTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCTCCACCTCCAGACAACTGGGAAAGAGCCTAGAGCTTGGTTA  300

seq1  AAAAAAAGGACCTTGAACAGGATGGTGTGGTACACCTATAATTCCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGACCTTGAACAGGATGGTGTGGTACACCTATAATTCCTGCAC  350

seq1  TGAGCTACATAGCAAGTACAAGGACAGCCTGTGATCTTGGAAAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACATAGCAAGTACAAGGACAGCCTGTGATCTTGGAAAGAGAGAG  400

seq1  GAAGAAGGCGAGACGTGGAACGACAAGACACTGAGGAGGAAATGAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGCGAGACGTGGAACGACAAGACACTGAGGAGGAAATGAGACCT  450

seq1  TCTGCTGGTCTCTTGATCTCATAGGCACAAGCAGAGATGTACTGCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGTCTCTTGATCTCATAGGCACAAGCAGAGATGTACTGCAGGGG  500

seq1  TCCTAAAATAGGGCATGGTAGCAGTTCCCTGAAACACACAACTAAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATAGGGCATGGTAGCAGTTCCCTGAAACACACAACTAAACCAG  550

seq1  GACCAATTAAATATTCAACAGATGCATCTTGTGTTTTTGTTTTTCAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATTAAATATTCAACAGATGCATCTTGTGTTTTTGTTTTTCAAGAC  600

seq1  AAAGTTCTCTGTGTAGCCTTGGTTGTCCTGAAACTTACTCTGTAGACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTCTGTGTAGCCTTGGTTGTCCTGAAACTTACTCTGTAGACCAG  650

seq1  GCTGGCTTTGAACTCATAAAGATCTGCCTGCCTCTGTTTCCAAGTGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTTGAACTCATAAAGATCTGCCTGCCTCTGTTTCCAAGTGCTGG  700

seq1  GATTAAAGGTGTGAACCATGCGCCACAACTGGTGCATCTTGTAATGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGAACCATGCGCCACAACTGGTGCATCTTGTAATGAGCC  750

seq1  AGATCTATGGCCCCTGAGAACATCCAACTTTATCATCTAATTGTAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATGGCCCCTGAGAACATCCAACTTTATCATCTAATTGTAGATTT  800

seq1  CTCTACTTATAATGCATTTCCATTAGCCCGAGGTCTTGAGAATCTTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTATAATGCATTTCCATTAGCCCGAGGTCTTGAGAATCTTGTTA  850

seq1  AACATCAT-GGCCTTGCCTGCTTTCATTTTGTGTTAACTGTGTCCCCTGA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGGGCCTTGCCTGCTTTCATTTTGTGTTAACTGTGTCCCCTGA  900

seq1  CTTAAAGTGAGTGATTTGCTGAGAAGTAATACAACACTGAAGTCTGTCCC  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAAAGTGAGTGATTTGCTGAGAAGTAATAC-ACACTGAAGTCTGTCCC  949

seq1  -TGATGGTTCTTGGGTCACATGTCAGGTAGACCACATATTTTTATTTTAT  998
       |||||||||||||||||||||||||||||| ||||||||    | ||||
seq2  TTGATGGTTCTTGGGTCACATGTCAGGTAGA-CACATATT----TATTAT  994

seq1  ATTTATTCTCCAATTTTTTCCAGGATGGAAATGAAGAACACTACAAAACA  1048
      | |||| |||||||||||| |||||| |||||| |||||||||| |||| 
seq2  A-TTATCCTCCAATTTTTT-CAGGAT-GAAATG-AGAACACTAC-AAACC  1039

seq1  AATAAACAAACAAATAGACAACTCCACATTAAAGGACACAACTGCCCAGA  1098
      ||| |||||   ||||||||||| |||||| |||||||| |||  |||||
seq2  AATTAACAA--CAATAGACAACTTCACATT-AAGGACAC-ACTTGCCAGA  1085

seq1  ATGAATGAAATTTAAATGCAAAGGTTAAATAAAGTAAGACCTGCATCAGT  1148
      ||| ||||||||||||||| ||||||||||||||| ||| |||| ||| |
seq2  ATGGATGAAATTTAAATGC-AAGGTTAAATAAAGT-AGA-CTGC-TCA-T  1130

seq1  GTGGATGT-AGTTGTGTACTGCCGTGATTTCTTCTCAGAACCAGGGTACT  1197
      ||||| || |||   |||||||  ||| ||| |||||||||| | | |||
seq2  GTGGAAGTGAGTGTGGTACTGC--TGAATTC-TCTCAGAACC-GAGCACT  1176

seq1  TGTCTTAGTTAGGGTT  1213
      |||  |||||||||||
seq2  TGTTCTAGTTAGGGTT  1192