BAC Information

Click to search

BAC

Clone NameB6Ng01-105A15
Chromosome10 (Build37)6 (Build37)
Map Location 104,053,500 - 104,054,36342,941,994 - 42,942,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A15.bB6Ng01-105A15.g
ACCDH913168DH913169
length1,026908
definitionDH913168|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A15, 5' end.DH913169|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,500 - 104,054,363)(42,941,994 - 42,942,866)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaataaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggaggacatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttactaaacacatgaaactcaag
aagaatgttccattttctgatgactttaattctagcaaagggcaaagtaa
atgtgaggcaccaaattttacaaggagtacaacctttcttcccagaatgt
ttctcacagtgcctccacttcttcaccatcttttcacaacacccttgacc
tcagcatttgtcatgctgtagattagggagtttagcatggggttgaaaag
gatgtaaaacatggcaagaatcttctgctgctcctcaaagtactaagtct
tggtggccaggtatatgatgatggcattaccagagaatgacctgaccaca
cacaggtgggagaaagagtgagaggattttctgtgtcctcttttgactga
cccttatgatgtcatcagattgatgc
gaattctttatatattttggatattagccctctgcaggacatagggttaa
agaagatttttttccctatctgtaggctgctgttttgtcctagtgacagt
gtcctttacattacagaagttttcattttcaaaatgtcctatgtatcagt
tgttggtcttagagtctgagccattggactccaagatttctagatgtggg
aagatatgaatcgttccagagtcaggattcacaaatgaggaggatggtga
ctcatgaaaaaaaaaaactggatttgggagaagaaatgcagaactgttac
atatgcatactccagtgcccaatattcatgttttatcacattcaacaaat
tgttttatttagaaacataggcataattattttgcaattttgatggggat
tgcattgaatctacttttggtaaaatggtcatttttactgtgttaaacct
accaggacatgagcatgggaaatcattccatcttctgaggtcttattgta
tttctttctttagagacttgaaattcttatcagagagagctttcctttat
ttggttagagttacactaagatatgttatactacttgtgactattgtgaa
gtgtgtttttccatattttctttctcagcccatttatcatttgtataaag
gaaggctaactcaaactcatttgtttgagttaattttatatccagacact
ttgctgaagttgtctgtcagctgtagaagatctgcagtaaaattgggggg
ggggggggtctctgatgttactatcatataaaatgcgtaccttgacttcc
tcctttccaaattgtatccacttgtccttcttttgtgtctagctttacca
aacttttagtacaatctgaatagataagtgaagatcagcagccttatcta
tccggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053500_104054363
seq2: B6Ng01-105A15.b_45_695 (reverse)

seq1  TCTTGAGTTTAATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCT  50
      |||||||||| |||||||||| |||||||||||||||||||||| |||||
seq2  TCTTGAGTTTCATGTGTTTAGTAAATTGTATCTTATATCTTGGGAATCCT  50

seq1  AAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTT  100
      | ||||  |||||||||||||||||||||||||||||||||| | |||||
seq2  AGGTTT-GGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTT  99

seq1  CCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCC  150
      ||||||||| || |||||| |||||||||||||   ||||||||||||||
seq2  CCTTTGTGAATGTGTTACCTCACTCAGGATGATGTCCTCCAGGTCCATCC  149

seq1  ATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACA  200
      ||||| ||||||||||||||||||||||||||||||||||          
seq2  ATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGC----------  189

seq1  TTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAAT  250
                                                        
seq2  --------------------------------------------------  189

seq1  TTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAA  300
                                                        
seq2  --------------------------------------------------  189

seq1  ATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAAT  350
                                                        
seq2  --------------------------------------------------  189

seq1  TTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATT  400
          | ||||                             |||        
seq2  ----TGAGTA-----------------------------GTA--------  198

seq1  ACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTC  450
                 |||||||||||| ||||||||||||||||||||| ||||
seq2  -----------CTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTC  237

seq1  CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATA  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATA  287

seq1  AGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCA  550
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCA  337

seq1  TCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTAC  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTAC  387

seq1  TATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTA  650
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTA  437

seq1  CAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACAT  487

seq1  CCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGAC  750
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGAC  537

seq1  TGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGA  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGTGTGAGGTGGAATCTCAGGGTTATTTTGATTTGCATTTCCCTGATGA  587

seq1  TTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCC  637

seq1  TCAGGTGAGAATTC  864
      ||||||||||||||
seq2  TCAGGTGAGAATTC  651

seq1: chr6_42941994_42942866
seq2: B6Ng01-105A15.g_69_940

seq1  GAATTCTTTATATATTTTGGATATTAGCCCTCTGCAGGACATAGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGGATATTAGCCCTCTGCAGGACATAGGGTTAA  50

seq1  AGAAGATTTTTTTCCCTATCTGTAGGCTGCTGTTTTGTCCTAGTGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTTTTTTCCCTATCTGTAGGCTGCTGTTTTGTCCTAGTGACAGT  100

seq1  GTCCTTTACATTACAGAAGTTTTCATTTTCAAAATGTCCTATGTATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTACATTACAGAAGTTTTCATTTTCAAAATGTCCTATGTATCAGT  150

seq1  TGTTGGTCTTAGAGTCTGAGCCATTGGACTCCAAGATTTCTAGATGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCTTAGAGTCTGAGCCATTGGACTCCAAGATTTCTAGATGTGGG  200

seq1  AAGATATGAATCGTTCCAGAGTCAGGATTCACAAATGAGGAGGATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGAATCGTTCCAGAGTCAGGATTCACAAATGAGGAGGATGGTGA  250

seq1  CTCATGAAAAAAAAAAACTGGATTTGGGAGAAGAAATGCAGAACTGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAAAAAAAAAACTGGATTTGGGAGAAGAAATGCAGAACTGTTAC  300

seq1  ATATGCATACTCCAGTGCCCAATATTCATGTTTTATCACATTCAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACTCCAGTGCCCAATATTCATGTTTTATCACATTCAACAAAT  350

seq1  TGTTTTATTTAGAAACATAGGCATAATTATTTTGCAATTTTGATGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTAGAAACATAGGCATAATTATTTTGCAATTTTGATGGGGAT  400

seq1  TGCATTGAATCTACTTTTGGTAAAATGGTCATTTTTACTGTGTTAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAATCTACTTTTGGTAAAATGGTCATTTTTACTGTGTTAAACCT  450

seq1  ACCAGGACATGAGCATGGGAAATCATTCCATCTTCTGAGGTCTTATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACATGAGCATGGGAAATCATTCCATCTTCTGAGGTCTTATTGTA  500

seq1  TTTCTTTCTTTAGAGACTTGAAATTCTTATCAGAGAGAGCTTTCCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTAGAGACTTGAAATTCTTATCAGAGAGAGCTTTCCTTTAT  550

seq1  TTGGTTAGAGTTACACTAAGATATGTTATACTACTTGTGACTATTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGAGTTACACTAAGATATGTTATACTACTTGTGACTATTGTGAA  600

seq1  GTGTGTTTTTCCATATTTTCTTTCTCAGCCCATTTATCATTTGTATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTTCCATATTTTCTTTCTCAGCCCATTTATCATTTGTATAAAG  650

seq1  GAAGGCTAACTCAAACTCATTTGTTTGAGTTAATTTTATATCCAGACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTAACTCAAACTCATTTGTTTGAGTTAATTTTATATCCAGACACT  700

seq1  TTGCTGAAGTTGTCTGTCAGCTGTAGAAGATCTGCAGTAAAATT--GGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TTGCTGAAGTTGTCTGTCAGCTGTAGAAGATCTGCAGTAAAATTGGGGGG  750

seq1  GGGGGGGGTCTCTGATGTATACTATCATATTATATGCGTACCTTGACTTC  798
      |||||||||||||||||| ||||||||||| | |||||||||||||||||
seq2  GGGGGGGGTCTCTGATGT-TACTATCATATAAAATGCGTACCTTGACTTC  799

seq1  TTCCTTTCCAAATTGTATCCACTTGT-CTTCTTTTGTTGTCTAGCTTTAA  847
       ||||||||||||||||||||||||| ||||||||| ||||||||||| |
seq2  CTCCTTTCCAAATTGTATCCACTTGTCCTTCTTTTG-TGTCTAGCTTT-A  847

seq1  CCAAACTTTTAGTACAAATCTGAATA  873
      ||||||||||||||| ||||||||||
seq2  CCAAACTTTTAGTAC-AATCTGAATA  872