BAC Information

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BAC

Clone NameB6Ng01-105G10
Chromosome6 (Build37)
Map Location 12,743,868 - 12,911,682
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105G10.bB6Ng01-105G10.g
ACCDH913434DH913435
length1,0901,006
definitionDH913434|Mus musculus domesticus DNA, BAC clone: B6Ng01-105G10, 5' end.DH913435|Mus musculus domesticus DNA, BAC clone: B6Ng01-105G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,743,868 - 12,744,962)(12,910,676 - 12,911,682)
sequence
gaattcttttccaaactaagaggaagataaaatttctaagaaggacaatt
cagttaccttattaccattaaaatctaaatgtctttaaaacaacaataaa
aatgttgccacaaaatgcaagagattacttaaaagctgtattagttaact
ctgtaactttcctgccactattatctctgaaaagagtttagagaaggaat
ttgatgcatgattagaatgcactgtacaaaattatcaaataatttataaa
atagttttaaaggctatattagtaaaatatctccttgcttttatacatac
caataacaattgaactttgaaaggatcactgaaaatatgcattttctcca
acttaatcagaatatttgaataagaaagaatgcagtcacccatggtgacc
aggtaagtgcaatcattaaacaatattccagaatatttaaccttcaacaa
ataagaattaaattaacatcttctatctttgatcttttcctgtaaaattc
tttgttgaaccatctgcccctagtcagataacaaatgttgctgtctcaac
agaaaagaccaattacctagaaggaaatccccaaacatgaatagtccagt
atgccattgtaatcttccacatataatgaatcaaatatttcattagtcat
cttgactgactttacctttatttaaaaaacacttttatctatgtactttt
acataaaaggttgtatctttatttattttgtttttggattatgggaaatt
aaaatggagatgtatttatatgtatgcatagaagtctgagagaaattaaa
aacaagaaaaccatatcatgaactagctaatataacaaataatgatacat
ttgtagattagaaaaaggattttagctttataatttgctaataaaaataa
gctgttggtatcaaactgagttgattcattaagtaaattctttttgtgtt
atatgtaaagttgccccaggaaggccaatgattatctcaggagcagatgc
agcattatggaatattagataggatttgtttgaatttacgggtttgaaat
acattaataaactcaagtggaacttctagtatttctaagg
gaattcaagcacataaatgacaatggacactgctgtgaaagacagtgtga
aaggtagcccatggctttgtcaggatgttcttctatgtaatatttaacaa
tctggcaatcatttggaatattggaagaaaaacatgggccattacttaaa
aggtagctggaggttcatctgtatcagatcctgaaactgacattaatatg
cactatgaaataaatctctcccatttgttgttacatatctagatattttg
atatgatacattagaatacaagactgaaattttgtgatttaaacaggtag
ttaggtgacccagaaacatatataatgattgctaagtataggatggagct
tggactacacttaaataaacagtttaagcatgttaaacatttttaccatt
atatatttaagatattaactaaaaatgttttattcttcaagcagatcaag
attcccaggttaaatttgattattttcagtaactctgtaaaattttatga
ttactatgaaggaaagaatgatattcttgctagcataaatcagtcatgtc
aacagcttgaatgtaccttttgttatgtattgctaatctcctgaaacaag
gaagggaaaataactaactcacaaaggaatgtggacttctgcacagacag
cagggtaaaagccatacttgattcccctgcctgtgtttacaagttttcca
acatgtggaaatcattgatcacattaattcacagtcaacttctctttgtt
cttccctagaacctttcaaagccttatagtgtgctaagttctacaaacac
ctcaactttcagtttctagcatccttttatttgtaaagtaacatgttttg
taactcttgagagaatactgtgaatgtgaaatgattaaagcacttagctt
tttctaattgccaatcatctaaaaacatcaattcacagcttacttttttt
tttgtttgtttctctagaaccttcaaagtattgcaggggctaattctcac
cggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12743868_12744962
seq2: B6Ng01-105G10.b_36_1125

seq1  GAATTCTTTTCCAAACTAAGAGGAAGATAAAATTTCTAAGAAGGACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAAACTAAGAGGAAGATAAAATTTCTAAGAAGGACAATT  50

seq1  CAGTTACCTTATTACCATTAAAATCTAAATGTCTTTAAAACAACAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCTTATTACCATTAAAATCTAAATGTCTTTAAAACAACAATAAA  100

seq1  AATGTTGCCACAAAATGCAAGAGATTACTTAAAAGCTGTATTAGTTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCACAAAATGCAAGAGATTACTTAAAAGCTGTATTAGTTAACT  150

seq1  CTGTAACTTTCCTGCCACTATTATCTCTGAAAAGAGTTTAGAGAAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTTTCCTGCCACTATTATCTCTGAAAAGAGTTTAGAGAAGGAAT  200

seq1  TTGATGCATGATTAGAATGCACTGTACAAAATTATCAAATAATTTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCATGATTAGAATGCACTGTACAAAATTATCAAATAATTTATAAA  250

seq1  ATAGTTTTAAAGGCTATATTAGTAAAATATCTCCTTGCTTTTATACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTAAAGGCTATATTAGTAAAATATCTCCTTGCTTTTATACATAC  300

seq1  CAATAACAATTGAACTTTGAAAGGATCACTGAAAATATGCATTTTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAATTGAACTTTGAAAGGATCACTGAAAATATGCATTTTCTCCA  350

seq1  ACTTAATCAGAATATTTGAATAAGAAAGAATGCAGTCACCCATGGTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATCAGAATATTTGAATAAGAAAGAATGCAGTCACCCATGGTGACC  400

seq1  AGGTAAGTGCAATCATTAAACAATATTCCAGAATATTTAACCTTCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTGCAATCATTAAACAATATTCCAGAATATTTAACCTTCAACAA  450

seq1  ATAAGAATTAAATTAACATCTTCTATCTTTGATCTTTTCCTGTAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATTAAATTAACATCTTCTATCTTTGATCTTTTCCTGTAAAATTC  500

seq1  TTTGTTGAACCATCTGCCCCTAGTCAGATAACAAATGTTGCTGTCTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAACCATCTGCCCCTAGTCAGATAACAAATGTTGCTGTCTCAAC  550

seq1  AGAAAAGACCAATTACCTAGAAGGAAATCCCCAAACATGAATAGTCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACCAATTACCTAGAAGGAAATCCCCAAACATGAATAGTCCAGT  600

seq1  ATGCCATTGTAATCTTCCACATATAATGAATCAAATATTTCATTAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTAATCTTCCACATATAATGAATCAAATATTTCATTAGTCAT  650

seq1  CTTGACTGACTTTACCTTTATTT-AAAAACAC-TTTATCTATGTACTTTT  698
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CTTGACTGACTTTACCTTTATTTAAAAAACACTTTTATCTATGTACTTTT  700

seq1  ACATAAAAGGTTGTATC-TTATTTA-TTTGTTTTTGGATTATGGGAAATT  746
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  ACATAAAAGGTTGTATCTTTATTTATTTTGTTTTTGGATTATGGGAAATT  750

seq1  -AAAGGGAGATGTATTTATATGTATGCATAGAAGTCTGAGAGAAA-TAAA  794
       ||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATGGAGATGTATTTATATGTATGCATAGAAGTCTGAGAGAAATTAAA  800

seq1  AACAAGAAAACCATATCATGAACTAGCTAATATAACAAATAATGATACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAACCATATCATGAACTAGCTAATATAACAAATAATGATACAT  850

seq1  TTGTAGATTAGAAAAAGGATTTTAGCTTTATAATTTGCTAATAAAAATAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATTAGAAAAAGGATTTTAGCTTTATAATTTGCTAATAAAAATAA  900

seq1  GCTGTTGGTA-CAAACTGAGTTGATTCAATATAGTAAATTTGTTTTTGTT  943
      |||||||||| ||||||||||||||||| || |||||| || ||||||| 
seq2  GCTGTTGGTATCAAACTGAGTTGATTCATTA-AGTAAA-TTCTTTTTGT-  947

seq1  GTTTATATGTAAATTTTCCTCTATGAAGTCATATGATTATCTCAAGAGCA  993
        ||||||||||| || || | | |||| |  |||||||||||| |||||
seq2  -GTTATATGTAAAGTTGCC-CCAGGAAGGCCAATGATTATCTCAGGAGCA  995

seq1  GATAGCAGCATTATGGAATATTAAGATAGGATTTGTTTTGAATTTTAGTG  1043
      ||| |||||||||||||||||| |||||||||||| |||||| ||||  |
seq2  GAT-GCAGCATTATGGAATATT-AGATAGGATTTG-TTTGAA-TTTACGG  1041

seq1  TTTTGAAATAACATTAAATAGAACTCAAGTGAAACTACTAGAATTTCTAA  1093
       |||||||| ||||| |||| |||||||||| |||| |||| ||||||||
seq2  GTTTGAAAT-ACATT-AATA-AACTCAAGTGGAACTTCTAGTATTTCTAA  1088

seq1  AG  1095
       |
seq2  GG  1090

seq1: chr6_12910676_12911682
seq2: B6Ng01-105G10.g_70_1068 (reverse)

seq1  TGAGAATTTAGCACACTGCAATACTTTGAAAGGTTCTAGAGAAAACAAAA  50
      |||||| ||||| | ||||||||||||| |||||||||||| ||||||| 
seq2  TGAGAA-TTAGC-CCCTGCAATACTTTG-AAGGTTCTAGAG-AAACAAA-  45

seq1  CAAAAAAAAAAAGTTAGCTGTGAATTGATGTTTTTAGATGATTGGCAATT  100
        |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -CAAAAAAAAAAGTAAGCTGTGAATTGATGTTTTTAGATGATTGGCAATT  94

seq1  AGAAAAATGCTAAGTGCTTTAATTCATTTCACATTCACAGTAATCTTCTC  150
      ||||||| |||||||||||||| ||||||||||||||||||| || ||||
seq2  AGAAAAA-GCTAAGTGCTTTAA-TCATTTCACATTCACAGTATTC-TCTC  141

seq1  AAGAGTTAC-AAACATGTTACTTTACAAATAAAAGGATGCTAG-AACTGA  198
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AAGAGTTACAAAACATGTTACTTTACAAATAAAAGGATGCTAGAAACTGA  191

seq1  AAGTTGAGGTGTTTGTAGAACTTAGCACACTATAAGGCTTTGAAAGGTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGGTGTTTGTAGAACTTAGCACACTATAAGGCTTTGAAAGGTTC  241

seq1  TAGGGAAGAACAAAGAGAAGTTGGCTGTGAATTAATGTTGATCAATGATT  298
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TAGGGAAGAACAAAGAGAAGTTGACTGTGAATTAATG-TGATCAATGATT  290

seq1  TCCACATGTTGGAAAACTTGTAAACACAGGCAGGGGAATCAAGTATGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGTTGGAAAACTTGTAAACACAGGCAGGGGAATCAAGTATGGCT  340

seq1  TTTACCCTGCTGTCTGTGCAGAAGTCCACATTCCTTTGTGAGTTAGTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGCTGTCTGTGCAGAAGTCCACATTCCTTTGTGAGTTAGTTAT  390

seq1  TTTCCCTTCCTTGTTTCAGGAGATTAGCAATACATAACAAAAGGTACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCTTGTTTCAGGAGATTAGCAATACATAACAAAAGGTACATT  440

seq1  CAAGCTGTTGACATGACTGATTTATGCTAGCAAGAATATCATTCTTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTTGACATGACTGATTTATGCTAGCAAGAATATCATTCTTTCCT  490

seq1  TCATAGTAATCATAAAATTTTACAGAGTTACTGAAAATAATCAAATTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAATCATAAAATTTTACAGAGTTACTGAAAATAATCAAATTTAA  540

seq1  CCTGGGAATCTTGATCTGCTTGAAGAATAAAACATTTTTAGTTAATATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAATCTTGATCTGCTTGAAGAATAAAACATTTTTAGTTAATATCT  590

seq1  TAAATATATAATGGTAAAAATGTTTAACATGCTTAAACTGTTTATTTAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATAATGGTAAAAATGTTTAACATGCTTAAACTGTTTATTTAAG  640

seq1  TGTAGTCCAAGCTCCATCCTATACTTAGCAATCATTATATATGTTTCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCAAGCTCCATCCTATACTTAGCAATCATTATATATGTTTCTGG  690

seq1  GTCACCTAACTACCTGTTTAAATCACAAAATTTCAGTCTTGTATTCTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTAACTACCTGTTTAAATCACAAAATTTCAGTCTTGTATTCTAAT  740

seq1  GTATCATATCAAAATATCTAGATATGTAACAACAAATGGGAGAGATTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATATCAAAATATCTAGATATGTAACAACAAATGGGAGAGATTTAT  790

seq1  TTCATAGTGCATATTAATGTCAGTTTCAGGATCTGATACAGATGAACCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGCATATTAATGTCAGTTTCAGGATCTGATACAGATGAACCTC  840

seq1  CAGCTACCTTTTAAGTAATGGCCCATGTTTTTCTTCCAATATTCCAAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCTTTTAAGTAATGGCCCATGTTTTTCTTCCAATATTCCAAATG  890

seq1  ATTGCCAGATTGTTAAATATTACATAGAAGAACATCCTGACAAAGCCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGATTGTTAAATATTACATAGAAGAACATCCTGACAAAGCCATG  940

seq1  GGCTACCTTTCACACTGTCTTTCACAGCAGTGTCCATTGTCATTTATGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTTTCACACTGTCTTTCACAGCAGTGTCCATTGTCATTTATGTG  990

seq1  CTTGAATTC  1007
      |||||||||
seq2  CTTGAATTC  999