BAC Information

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BAC

Clone NameB6Ng01-105J10
Chromosome6 (Build37)
Map Location 49,181,347 - 49,327,227
singlet/doubletdoublet
Overlap geneTra2a, Ccdc126, D330028D13Rik
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626
Downstream geneStk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J10.bB6Ng01-105J10.g
ACCDH913569DH913570
length1,1281,032
definitionDH913569|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J10, 5' end.DH913570|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,326,094 - 49,327,227)(49,181,347 - 49,182,382)
sequence
gaattcatttaagactgggggtgtagctcagtggccttgcctagtattca
tgagatctttggatcaatgcccacccaatatcaactgccacagcaaaaaa
agggaccagattaataaaattctcattaaaaaacatttttattattttta
tagatttattttatgtttgtgtgtatgcgtgattgtctaaatgtatgaat
gtgtacaatgtctgtctacaaatggttgaaaggcatcatgtaggtgctag
aactgaacctaggtcctccataagaataataattattatttactgcttta
ctccaccccattactgaaaacttcaccagagctggagagatgtgtcagtg
gttaagagcacttactgctcttctatagagaacccagcacccacagggca
gttcacagccatctataagtctagttccaggtatccttttcctggccttc
acatgtaccaagagcacatgcggtacaagatacacatgtagacaagatac
ccataggcataaaattaaattaaaataaatttagaaaacaacaaaaaaca
acttttgagccaggcagtggtggctcatgtctttaattccagcgactcag
gaggcagggggcagatggatctctgtgagttcgaggccagcctggtttac
agagctagttccaggacagccaggcaacacaaagaaaccctgtctccaaa
aataaaaatgaaataataataataataatcaggtctttgtctagtaattc
tttaaaatctatccctgttacttataatgactgaacttcaaacattccaa
gaactgagtctccacgcattgaattttactttgtagctaaatattgactt
tgtaactaaatgaactgtcaaatccaataagtatttaatgaagaacttag
agcactctgcacttcgcatagaatgggacttacaggcattgcatggtgag
ccaagagcggcactgtgctggatcagcaagtgcttgccatctgcagcgaa
tagctgggtaccattcgaaggactatagtggtaagccttgcaccggcacc
atctactcggcacgcagcaatgggacgcttctttgggttcgtttcaagtc
agttttgtggcggttatacctttagaaa
gaattcttttcctttctgcaaggctagagagaaaatcagagccttgtcca
tactagacaagtgttctacctctgaacacctctccagctgctggagtagt
cttactatctgctgtggagaaaacacattacattggatgaaatgtcgctc
acaaatacagtagtggacatttttctgtattatttatttgcctgtatggg
gtgcccgtgttggactgtctttgagaatctacaccaatataaccagtgta
gctggccagcttgctccagaaatcccgatcactaccttctcagttcagga
actgcaagtaaccgctacatcctggtgtttaattggtgctagggatctga
actccagtcccttgggctctaatgcccagttctgatctccatgagtacca
agcacatgtgtgatacacacacatgctcgcacacacacacacacacacac
acacacacacaaacataaaataaatgaatcaggaaaaattacctcacagt
gagacaacaaacaaacaaatttctagaagaatcctgaagttggataggtc
gagaagaagagagctttaagatcactttttttttttcctgagacaagatt
tctctgtgtagcactggctgtcctggaactgtctctgtagaccaagctgt
cctcgaactcagtgatccacttgcctctgcctccctagtgctgggattaa
aggtgagtgccatcacacccagctagaactttttttttaattgccatata
tttgtatatatttttaggtaaggatggtggcttggtttgtgggtacactg
tgcagtgactgactctggggggtcagcatgtgttttttactgtttgagac
aggccatgttgcttcctcaagcatccgtgctgctggacccatcacacagc
tgggggctattggatgtgccactgtgcccaaagagtctctgaaactttct
atccttatgatgatacctactcagtcctctccagcgtcctgctaggggtg
gaaggaggtggaactctaccctcccaaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49326094_49327227
seq2: B6Ng01-105J10.b_44_1171 (reverse)

seq1  TTTCTAAAGGTATAAACAGCACAAAACTGACTTTGAAACGATCCCACAGC  50
      ||||||||||||||| |  |||||||||||| ||||||||| |||| || 
seq2  TTTCTAAAGGTATAACCGCCACAAAACTGAC-TTGAAACGAACCCAAAGA  49

seq1  AGCGTCCCATTGCCCTGCCGTGCCGAGTGAGTGGTTGCCGGTGCAAGGCT  100
      ||||||||||||  ||| |||||||||| ||  | |||||||||||||||
seq2  AGCGTCCCATTG--CTG-CGTGCCGAGT-AGATGGTGCCGGTGCAAGGCT  95

seq1  TACCACTAT-GTCCCTCTGAATGGTACCCAGCCTATTCGCTGCAGGT-GC  148
      ||||||||| |||| || ||||||||||||| ||||||||||||| | ||
seq2  TACCACTATAGTCCTTC-GAATGGTACCCAG-CTATTCGCTGCAGATGGC  143

seq1  AAGCACTTTGCTGAT-CAGCACAGTGCCGCTCTTGGCTTCACATGCAATG  197
      |||||| |||||||| ||||||||||||||||||||||   |||||||||
seq2  AAGCAC-TTGCTGATCCAGCACAGTGCCGCTCTTGGCTCACCATGCAATG  192

seq1  CCTGTAAGTTCCATTCTTATGCGAAGTTGCAGAGTGCTCTAAGTTCTTCA  247
      ||||||||| |||||| ||||||||| |||||||||||||||||||||||
seq2  CCTGTAAGTCCCATTC-TATGCGAAG-TGCAGAGTGCTCTAAGTTCTTCA  240

seq1  TTAAATACTTATTGGATTTGACAGTTCATTTAGTTACAAAGTCAATATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTTATTGGATTTGACAGTTCATTTAGTTACAAAGTCAATATTT  290

seq1  AGCTACAAAGTAAAATTCAATGCGTGGAGACTCAGTTCTTGGAATGTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAGTAAAATTCAATGCGTGGAGACTCAGTTCTTGGAATGTTTG  340

seq1  AAGTTCAGTCATTATAAGTAACAGGGATAGATTTTAAAGAATTACTAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTCATTATAAGTAACAGGGATAGATTTTAAAGAATTACTAGAC  390

seq1  -AAGACCTGATTATTATTATTATTATTTCATTTTTATTTTTGGAGACAGG  446
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGATTATTATTATTATTATTTCATTTTTATTTTTGGAGACAGG  440

seq1  GTTTCTTTGTGTTGCCTGGCTGTCCTGGAACTAGCTCTGTAAACCAGGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTGTTGCCTGGCTGTCCTGGAACTAGCTCTGTAAACCAGGCT  490

seq1  GGCCTCGAACTCACAGAGATCCATCTGCCCCCTGCCTCCTGAGTCGCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCACAGAGATCCATCTGCCCCCTGCCTCCTGAGTCGCTGG  540

seq1  AATTAAAGACATGAGCCACCACTGCCTGGCTCAAAAGTTGTTTTTTGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGACATGAGCCACCACTGCCTGGCTCAAAAGTTGTTTTTTGTTG  590

seq1  TTTTCTAAATTTATTTTAATTTAATTTTATGCCTATGGGTATCTTGTCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAATTTATTTTAATTTAATTTTATGCCTATGGGTATCTTGTCTA  640

seq1  CATGTGTATCTTGTACCGCATGTGCTCTTGGTACATGTGAAGGCCAGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATCTTGTACCGCATGTGCTCTTGGTACATGTGAAGGCCAGGAA  690

seq1  AAGGATACCTGGAACTAGACTTATAGATGGCTGTGAACTGCCCTGTGGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACCTGGAACTAGACTTATAGATGGCTGTGAACTGCCCTGTGGGT  740

seq1  GCTGGGTTCTCTATAGAAGAGCAGTAAGTGCTCTTAACCACTGACACATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCTCTATAGAAGAGCAGTAAGTGCTCTTAACCACTGACACATC  790

seq1  TCTCCAGCTCTGGTGAAGTTTTCAGTAATGGGGTGGAGTAAAGCAGTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCTCTGGTGAAGTTTTCAGTAATGGGGTGGAGTAAAGCAGTAAA  840

seq1  TAATAATTATTATTCTTATGGAGGACCTAGGTTCAGTTCTAGCACCTACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTATTATTCTTATGGAGGACCTAGGTTCAGTTCTAGCACCTACA  890

seq1  TGATGCCTTTCAACCATTTGTAGACAGACATTGTACACATTCATACATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTTCAACCATTTGTAGACAGACATTGTACACATTCATACATTT  940

seq1  AGACAATCACGCATACACACAAACATAAAATAAATCTATAAAAATAATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCACGCATACACACAAACATAAAATAAATCTATAAAAATAATAA  990

seq1  AAATGTTTTTTAATGAGAATTTTATTAATCTGGTCCCTTTTTTTGCTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTTAATGAGAATTTTATTAATCTGGTCCCTTTTTTTGCTGTG  1040

seq1  GCAGTTGATATTGGGTGGGCATTGATCCAAAGATCTCATGAATACTAGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGATATTGGGTGGGCATTGATCCAAAGATCTCATGAATACTAGGC  1090

seq1  AAGGCCACTGAGCTACACCCCCAGTCTTAAATGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACTGAGCTACACCCCCAGTCTTAAATGAATTC  1128

seq1: chr6_49181347_49182382
seq2: B6Ng01-105J10.g_68_1099

seq1  GAATTCTTTTCCTTTCTGCAAGGCTAGAGAGAAAATCAGAGCCTTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTTTCTGCAAGGCTAGAGAGAAAATCAGAGCCTTGTCCA  50

seq1  TACTAGACAAGTGTTCTACCTCTGAACACCTCTCCAGCTGCTGGAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACAAGTGTTCTACCTCTGAACACCTCTCCAGCTGCTGGAGTAGT  100

seq1  CTTACTATCTGCTGTGGAGAAAACACATTACATTGGATGAAATGTCGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATCTGCTGTGGAGAAAACACATTACATTGGATGAAATGTCGCTC  150

seq1  ACAAATACAGTAGTGGACATTTTTCTGTATTATTTATTTGCCTGTATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACAGTAGTGGACATTTTTCTGTATTATTTATTTGCCTGTATGGG  200

seq1  GTGCCCGTGTTGGACTGTCTTTGAGAATCTACACCAATATAACCAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGTGTTGGACTGTCTTTGAGAATCTACACCAATATAACCAGTGTA  250

seq1  GCTGGCCAGCTTGCTCCAGAAATCCCGATCACTACCTTCTCAGTTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGCTTGCTCCAGAAATCCCGATCACTACCTTCTCAGTTCAGGA  300

seq1  ACTGCAAGTAACCGCTACATCCTGGTGTTTAATTGGTGCTAGGGATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGTAACCGCTACATCCTGGTGTTTAATTGGTGCTAGGGATCTGA  350

seq1  ACTCCAGTCCCTTGGGCTCTAATGCCCAGTTCTGATCTCCATGAGTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCCCTTGGGCTCTAATGCCCAGTTCTGATCTCCATGAGTACCA  400

seq1  AGCACATGTGTGATACACACACATGCTCGCACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTGTGATACACACACATGCTCGCACACACACACACACACACAC  450

seq1  ACACACACACAAACATAAAATAAATGAATCAGGAAAAATTACCTCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACATAAAATAAATGAATCAGGAAAAATTACCTCACAGT  500

seq1  GAGACAACAAACAAACAAATTTCTAGAAGAATCCTGAAGTTGGATAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAACAAACAAACAAATTTCTAGAAGAATCCTGAAGTTGGATAGGTC  550

seq1  GAGAAGAAGAGAGCTTTAAGATCACTTTTTTTTTTTCCTGAGACAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGAGAGCTTTAAGATCACTTTTTTTTTTTCCTGAGACAAGATT  600

seq1  TCTCTGTGTAGCACTGGCTGTCCTGGAACTGTCTCTGTAGACCAAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCACTGGCTGTCCTGGAACTGTCTCTGTAGACCAAGCTGT  650

seq1  CCTCGAACTCAGTGATCCACTTGCCTCTGCCTCCCTAGTGCTGGGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGTGATCCACTTGCCTCTGCCTCCCTAGTGCTGGGATTAA  700

seq1  AGGTGAGTGCCATCACACCCAGCTAGAACTTTTTTTTTAATTGCCATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTGCCATCACACCCAGCTAGAACTTTTTTTTTAATTGCCATATA  750

seq1  TTTGTATATATTTTTAGGTAAGGATGGTGGCTTGGTTTGTGGGTACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATATTTTTAGGTAAGGATGGTGGCTTGGTTTGTGGGTACACTG  800

seq1  TGCAGTGACTGACTCTGGGTGGTCAGCATGTGCTTTTTACTGTTTTGAGA  850
      ||||||||||||||||||| |||||||||||| ||||||||| |||||||
seq2  TGCAGTGACTGACTCTGGGGGGTCAGCATGTGTTTTTTACTG-TTTGAGA  849

seq1  CAGGGCCATGCTGC-TCCTCAAGCAGCCGTGCTGCTGTAGCCACTCACAC  899
      || ||||||| ||| |||||||||| ||||||||||| | ||| ||||||
seq2  CA-GGCCATGTTGCTTCCTCAAGCATCCGTGCTGCTGGACCCA-TCACAC  897

seq1  AGCT-GGGGCTATTGGCATGTGCCACTGTGCCCAAAGAGTCTCTG-AACT  947
      |||| ||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AGCTGGGGGCTATTGG-ATGTGCCACTGTGCCCAAAGAGTCTCTGAAACT  946

seq1  TGCCATTCTTTATGATGAACCCATCCAAGTCCTCTTCTAGTGTCTTGCTA  997
      | | | || |||||||||  ||  |  ||||||| || || ||| |||||
seq2  TTCTA-TCCTTATGATGATACCTACTCAGTCCTC-TCCAGCGTCCTGCTA  994

seq1  GGGGTGGGAGGAGGGTGAACTCTAGTCCTCCCAAATGTT  1036
      ||||||| ||||||  ||||||||  |||||||||||||
seq2  GGGGTGGAAGGAGGTGGAACTCTA-CCCTCCCAAATGTT  1032