BAC Information

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BAC

Clone NameB6Ng01-105L21
Chromosome6 (Build37)
Map Location 111,883,141 - 112,033,238
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105L21.bB6Ng01-105L21.g
ACCDH913679DH913680
length1,0991,031
definitionDH913679|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L21, 5' end.DH913680|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,883,141 - 111,884,251)(112,032,206 - 112,033,238)
sequence
gaattctcctggggatcctgcaagacacaggcatttcccatttttcccta
ctgtttcaagttgaacgcaaggaggttcagcctcagcaaggtcaagctat
ggggttccttggtggaaaatgatggatctaaacctggctctgctatcgcc
tcaagccacattgggatgccacatgaaactggtcataaagttagagttcg
agccttcagggcagcagtgagtcactaacgggaaatgaaagaaacaaagc
caaataaggattgctgagccaagaccatggtggctatactttatcaggaa
cttctggacccaggcctcccaaggtggttcttcaactccactcaggaaac
agacatccaacaggggatactatgtgccaggaaagaacacaccaggacat
tagtcattgatggattcagtatatactatgtgccaggcattgtatcagat
acttgatacatagtaatgagtaacaattcagtgagaagctgagaaaaatc
agtcagtttggagaggagtttgagccagaacagctgagttgaactagcca
gccagagttaagaaagaactagaaagggtgagcttattcagcagtaagcc
tcccagataactattaaatcaagcgaataaaagttacttttacatgtgtt
agcgactatccttgttactggaaccaaaccaacaagaaccagggaggtaa
gatgatttgcaactactgtgcttcactcttggcttttcaaggtcttatat
acctgcaattttactccaaactgctatctgagctaggtatttcttcgcct
catcttgcaagtaaggaagctaaccatggatgagctgtagcatattgttc
taggtcatgatgctctggaaaggcagagcacagacataaacacacgggca
ttgaaaatgggcactttgcctttagtttatacataaacatcctatgacct
aatgctcttttgtttaaagtatcccaggagtggctctattaagggtttat
agagagacataagagcagacatgacagagtgtctcagctgacctgaacta
aaataaaacagagtattctgtttttttttcctctaggcaattattggga
gaattcaaacttctttgaaaatttgaagcaattaagagatttttttccaa
catatattgagtattaccagtggatcacctcacacatatgggttttgtct
gtttttcactgttgaaattttgttgaatatatttaagcagaaggcctttt
cagagagttatcctctgatttatttttaccaagttctacagtgacttttc
atgtctccataaaattacttttcttacattgtcaatgattgagatgaata
aaagcgacctccttgaaagtagactataatatgttagaagtcctcagggt
gatggtactgggtggtgttggaactggtagaaagactgggtagaaagacc
cagtggaaggtctttttgtcattggagatttcattgagaggactgtgaac
tggcctcttcctctttgggttagtggctcttaagcaaactgtttagttca
cccatcaaaggtctaaggcagctggtctgcctgcacttggactagatcgt
ctaaaaccatgaactacaattccatctttctcttaataaactgttccaga
ggttttgttatagtagtgtaaagtcaagtgatgcatggatttcaaatatg
ctcatcatacctgggcagaaagagatacacggctatatattttgcatatt
gtcttcctgaaaatttttgtctttatttctgagagaataagaaaattgag
tgatatggtttctaaacatttcataatattagatgaccctaaattattca
aatcctccctggtggagaaagaatatattattttaatttattatgatggc
cataatttggtagctcaatcccttgcaagaagtaaacaattaagatcatg
caaaaacaaagctaaataacatggttaaatggatagcagagtgttacatg
gagtgccagcatgagattaggcactgttggtactctggccacatttgtga
cagttataatgggacaaaatccatcaggtcctaagtttgcacatatatct
gttcatttaaaatttatttcaatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111883141_111884251
seq2: B6Ng01-105L21.b_47_1145

seq1  GAATTCTCCTGGGGATCCTGCAAGACACAGGCATTTCCCATTTTTCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGGGATCCTGCAAGACACAGGCATTTCCCATTTTTCCCTA  50

seq1  CTGTTTCAAGTTGAACGCAAGGAGGTTCAGCCTCAGCAAGGTCAAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAAGTTGAACGCAAGGAGGTTCAGCCTCAGCAAGGTCAAGCTAT  100

seq1  GGGGTTCCTTGGTGGAAAATGATGGATCTAAACCTGGCTCTGCTATCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCTTGGTGGAAAATGATGGATCTAAACCTGGCTCTGCTATCGCC  150

seq1  TCAAGCCACATTGGGATGCCACATGAAACTGGTCATAAAGTTAGAGTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACATTGGGATGCCACATGAAACTGGTCATAAAGTTAGAGTTCG  200

seq1  AGCCTTCAGGGCAGCAGTGAGTCACTAACGGGAAATGAAAGAAACAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCAGGGCAGCAGTGAGTCACTAACGGGAAATGAAAGAAACAAAGC  250

seq1  CAAATAAGGATTGCTGAGCCAAGACCATGGTGGCTATACTTTATCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGGATTGCTGAGCCAAGACCATGGTGGCTATACTTTATCAGGAA  300

seq1  CTTCTGGACCCAGGCCTCCCAAGGTGGTTCTTCAACTCCACTCAGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGACCCAGGCCTCCCAAGGTGGTTCTTCAACTCCACTCAGGAAAC  350

seq1  AGACATCCAACAGGGGATACTATGTGCCAGGAAAGAACACACCAGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCAACAGGGGATACTATGTGCCAGGAAAGAACACACCAGGACAT  400

seq1  TAGTCATTGATGGATTCAGTATATACTATGTGCCAGGCATTGTATCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTGATGGATTCAGTATATACTATGTGCCAGGCATTGTATCAGAT  450

seq1  ACTTGATACATAGTAATGAGTAACAATTCAGTGAGAAGCTGAGAAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATACATAGTAATGAGTAACAATTCAGTGAGAAGCTGAGAAAAATC  500

seq1  AGTCAGTTTGGAGAGGAGTTTGAGCCAGAACAGCTGAGTTGAACTAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTGGAGAGGAGTTTGAGCCAGAACAGCTGAGTTGAACTAGCCA  550

seq1  GCCAGAGTTAAGAAAGAACTAGAAAGGGTGAGCTTATTCAGCAGTAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTTAAGAAAGAACTAGAAAGGGTGAGCTTATTCAGCAGTAAGCC  600

seq1  TCCCAGATAACTATTAAATCAAGCGAATAAAAGTTACTTTTACATGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATAACTATTAAATCAAGCGAATAAAAGTTACTTTTACATGTGTT  650

seq1  AGCGACTATCCTTGTTACTGGAACCAAACCAACAAGAACCAGGGAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACTATCCTTGTTACTGGAACCAAACCAACAAGAACCAGGGAGGTAA  700

seq1  GATGATTTGCAACTACTGTGCTTCACTCTTGGCTTTTCAAGGTCTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTGCAACTACTGTGCTTCACTCTTGGCTTTTCAAGGTCTTATAT  750

seq1  ACCTGCAATTTTACTCCAAACTGCTATCTGAGCTAGGTATTTCTTCGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAATTTTACTCCAAACTGCTATCTGAGCTAGGTATTTCTTCGCCT  800

seq1  CATCTTGCAAGTAAGGAAGCTAACCATGGATGAGCTGTAGCATATTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCAAGTAAGGAAGCTAACCATGGATGAGCTGTAGCATATTGTTC  850

seq1  TAGGTCATGATGCTCTGGAAAGGCAGAGCACAGACATAAACACACGGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGATGCTCTGGAAAGGCAGAGCACAGACATAAACACACGGGCA  900

seq1  TTGAAAATGGGCACTTTGCCTTTAGTTTATACATAAACATCCTATGAACC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGAAAATGGGCACTTTGCCTTTAGTTTATACATAAACATCCTATG-ACC  949

seq1  TAATGCTCTTTTTGTTTAAAAGTATCCCAGGAGTGGCTCTATAAAGGGTT  1000
      |||||||| |||||||| |||||||||||||||||||||||| |||||||
seq2  TAATGCTC-TTTTGTTT-AAAGTATCCCAGGAGTGGCTCTATTAAGGGTT  997

seq1  TATAGAGAGACATAAGGAGCAAGAACATTGACAGAGTGTCTCAGGCTGAC  1050
      ||||||||||||||| |||||   ||| ||||||||||||||| ||||||
seq2  TATAGAGAGACATAA-GAGCA--GACA-TGACAGAGTGTCTCA-GCTGAC  1042

seq1  CTTGAACTTAATATTAGACAGAGGTATTCTGTTTTTTTTTTCCTCTAGGC  1100
      | ||||| ||| || | ||||| |||||||| ||||||||||||||||||
seq2  C-TGAAC-TAAAATAAAACAGA-GTATTCTG-TTTTTTTTTCCTCTAGGC  1088

seq1  ATTTATTGGGA  1111
      | |||||||||
seq2  AATTATTGGGA  1099

seq1: chr6_112032206_112033238
seq2: B6Ng01-105L21.g_69_1099 (reverse)

seq1  ATATATATATGAAAATAAAATTTTAAAATGAACAGATATATGTGCAAACT  50
      ||||||||||  |||||||  ||| |||||||||||||||||||||||||
seq2  ATATATATATTGAAATAAA--TTTTAAATGAACAGATATATGTGCAAACT  48

seq1  TAGGACCTGATGGA-TGTGTCCCA-TATAACTGTCACAAATGTGGCCAGA  98
      |||||||||||||| | ||||||| |||||||||||||||||||||||||
seq2  TAGGACCTGATGGATTTTGTCCCATTATAACTGTCACAAATGTGGCCAGA  98

seq1  GTACC-ACAGTGCCTAATTCTTCATGCTGGCACTCCATGTAACACTTCTG  147
      ||||| ||||||||||||   |||||||||||||||||||||||| ||||
seq2  GTACCAACAGTGCCTAAT--CTCATGCTGGCACTCCATGTAACAC-TCTG  145

seq1  CTATCCATTTAACCATGTTATTTAGCTTTGTTTTTGCATGATCTTAATTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATTTAACCATGTTATTTAGCTTTGTTTTTGCATGATCTTAATTG  195

seq1  TTTTACTTCTTGCAA-GGATTGAGCTACCAAATTATGGCCATCATAATAA  246
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TTTACTTCTTGCAAGGGATTGAGCTACCAAATTATGGCCATCATAATAA  244

seq1  ATTAAAATAATATATTCTTTCTCCACCAGGGAGGATTTGAATAATTTAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAATATATTCTTTCTCCACCAGGGAGGATTTGAATAATTTAGG  294

seq1  GTCATCTAATATTATGAAATGTTTAGAAACCATATCACTCAATTTTCTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAATATTATGAAATGTTTAGAAACCATATCACTCAATTTTCTTA  344

seq1  TTCTCTCAGAAATAAAGACAAAAATTTTCAGGAAGACAATATGCAAAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGAAATAAAGACAAAAATTTTCAGGAAGACAATATGCAAAATA  394

seq1  TATAGCCGTGTATCTCTTTCTGCCCAGGTATGATGAGCATATTTGAAATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCGTGTATCTCTTTCTGCCCAGGTATGATGAGCATATTTGAAATC  444

seq1  CATGCATCACTTGACTTTACACTACTATAACAAAACCTCTGGAACAGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCACTTGACTTTACACTACTATAACAAAACCTCTGGAACAGTTT  494

seq1  ATTAAGAGAAAGATGGAATTGTAGTTCATGGTTTTAGACGATCTAGTCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGAAAGATGGAATTGTAGTTCATGGTTTTAGACGATCTAGTCCA  544

seq1  AGTGCAGGCAGACCAGCTGCCTTAGACCTTTGATGGGTGAACTAAACAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGCAGACCAGCTGCCTTAGACCTTTGATGGGTGAACTAAACAGT  594

seq1  TTGCTTAAGAGCCACTAACCCAAAGAGGAAGAGGCCAGTTCACAGTCCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAGAGCCACTAACCCAAAGAGGAAGAGGCCAGTTCACAGTCCTC  644

seq1  TCAATGAAATCTCCAATGACAAAAAGACCTTCCACTGGGTCTTTCTACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAATCTCCAATGACAAAAAGACCTTCCACTGGGTCTTTCTACCC  694

seq1  AGTCTTTCTACCAGTTCCAACACCACCCAGTACCATCACCCTGAGGACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTACCAGTTCCAACACCACCCAGTACCATCACCCTGAGGACTT  744

seq1  CTAACATATTATAGTCTACTTTCAAGGAGGTCGCTTTTATTCATCTCAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATATTATAGTCTACTTTCAAGGAGGTCGCTTTTATTCATCTCAAT  794

seq1  CATTGACAATGTAAGAAAAGTAATTTTATGGAGACATGAAAAGTCACTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACAATGTAAGAAAAGTAATTTTATGGAGACATGAAAAGTCACTGT  844

seq1  AGAACTTGGTAAAAATAAATCAGAGGATAACTCTCTGAAAAGGCCTTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGGTAAAAATAAATCAGAGGATAACTCTCTGAAAAGGCCTTCTG  894

seq1  CTTAAATATATTCAACAAAATTTCAACAGTGAAAAACAGACAAAACCCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATATTCAACAAAATTTCAACAGTGAAAAACAGACAAAACCCAT  944

seq1  ATGTGTGAGGTGATCCACTGGTAATACTCAATATATGTTGGAAAAAAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAGGTGATCCACTGGTAATACTCAATATATGTTGGAAAAAAATC  994

seq1  TCTTAATTGCTTCAAATTTTCAAAGAAGTTTGAATTC  1033
      |||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGCTTCAAATTTTCAAAGAAGTTTGAATTC  1031