BAC Information

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BAC

Clone NameB6Ng01-108D21
Chromosome6 (Build37)
Map Location 57,825,963 - 57,959,971
singlet/doubletdoublet
Overlap geneLOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17
Upstream geneFkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28
Downstream geneEG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D21.bB6Ng01-108D21.g
ACCDH915477DH915478
length1,1871,139
definitionDH915477|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D21, 5' end.DH915478|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,958,759 - 57,959,971)(57,825,963 - 57,827,132)
sequence
gaattcacaaagggttttaattggatgagaactaaactggactcatctag
actcatttagaaccatgttgctaatacaattaattggttctggaagttac
actaatggtcttccactgtatctatgtttgtcattcaagattctgagaat
gtaagatttcatgagaaaagaaacattaaaaagaatgaattgagatagac
ccttgctgattaaaactgtaatattattatgaattatgactgagattcca
tgagaatcatgcattaaaatatggataattgcaaaatagagcacaataaa
attatacagtatgatatattcacatctaattttttgaatatcttctatga
ttttcccccagctgaccacagtgtttatacatttgtacaaatgtgattga
tcttctatgctcattactactgttttagttaagtataaaatgagccagtt
taaagcaatagggttgtattttaaaagtaccagtctcaggtgcactacag
aaacacaaagtgtgtattctgtgtagatatgactctaagtacattcattg
tccaaaatattctctctatataagaaatacttggagggtatatagaaatg
taggatatagctaatatgaaaaatcaaaaaataaacatcttactcaagaa
ttattagggaaaatatgattatatacccttactctaaagtaatcataaat
gtgacacaatatattttttttcagatatatgaaagagatttccattatga
tttaagatgaatatactacacatttatgtcttcaattaagaatgtccttt
atttccaatctggacttggagttctagccaatatgtttctactgattttc
tatattttcatagtcttaggtcacagacctaagcccatagacctgatctc
ctgtcaactaaactttgttcacataatgatgttccttactgcaggggata
tttggcttacagacttatttgcgtcactgaacattgagaataacttcaaa
tgtagcacttttacataaacaggtgatgagagcctttctatctgcatcac
tgctctgagtttgttccagcgtcactatggagtccagtacctcttttttt
ggcaagttgaacataactaaaaagtacatcaatactttttcttatttttg
gcggtcaaattgctcgacgaacagctcttctgctggt
gaattcttaaggatatgtaaatgtgaaaaattacagatagacactaaatt
agttaataattgtatatttttagcttaagttacatattattaaacactca
cagacagtcaatttgagaaaagtaaaatgagaaagtacaatttatgataa
cttaatactatgaaggtaatcctgcacaccaataagtgtgtttctttgtt
tatcaccctctaaggtatttcagtgttttgtttcaggatggaaaatgagc
gcatttggaaatacttatgtagaaccattttgttgtttgttgtcactcta
aggatattactatgagctccctaaatgttgcatctggagcaactttttac
atgtatatgaatgtacagtccttgtaaaatgatggattgcatgacatgtt
cactgaatatataatacctatttgtcatctttactctattagtcttttct
ctatctttagcaacctttctgctaggccctgctcttctgagtagcccctt
tctagtgttacctatataaccagagatcatattaagataaatatatactt
ttttattaatcattacattgatacctttatgtctacaagtgtctgttgaa
tgcttgttattcagagtggctcaaaagtaatattgcaaacagaactctct
aatcatttattacagaaaatcctgcttccttctaccacacactttcagtt
ctcattaaaatgaagagtaaggaaacattcacccagctgggccttttaca
aacatccttgtggaatgaggtcccaagaaggagttataaggaacagatgt
catcagctagtatccctctagacccacagttatcatgtcacctggagaag
gcagttctaaccttgaggttgttaggaagtaacactatcaaatagaaaag
tgaacttcccaattccaggaaacagtagagtaggacacctgagctctggg
tttccatgtgtgagctatctctcaattctatatctgtcttgtgatactaa
ttcctgtcattgtgacaaagtatacatacatgccactaaaagtagaaaca
cttcagattcccatgattctttctgcttcaaaattcatgtctttcatact
tactgacagatatctttaagttctcctaaattaacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57958759_57959971
seq2: B6Ng01-108D21.b_45_1231 (reverse)

seq1  ACCAGCAGAGAAGAGCTGGTTACTGCTGAAAGACAAATTGAACAGCCAAA  50
      ||||||  ||||||||| |||  |       ||  ||||  || ||||||
seq2  ACCAGC--AGAAGAGCT-GTTCGT------CGAGCAATTTGACCGCCAAA  41

seq1  AATAGAAGAAAATGTATATGATGTACTTTTTTAGTGTATGTTTAAATTTT  100
      |||  ||||||| |||| |||||||| |||||||| |||||| ||   ||
seq2  AAT--AAGAAAAAGTAT-TGATGTAC-TTTTTAGT-TATGTTCAA--CTT  84

seq1  GCC-AAGAAAGAGGTACTGGGACT-CATAGTGACGGCCTGGAACACACTC  148
      ||| || ||||||||||| ||||| ||||||||||  |||||||| ||||
seq2  GCCAAAAAAAGAGGTACT-GGACTCCATAGTGACG--CTGGAACAAACTC  131

seq1  AGGAGGCAGGTGATGCAGATAGAGAGGCCTCTCATCACCCTGTTTATGTA  198
      ||   ||| |||||||||||||| ||| ||||||||| ||||||||||||
seq2  AG--AGCA-GTGATGCAGATAGAAAGG-CTCTCATCA-CCTGTTTATGTA  176

seq1  AAAAGTTGCCTTACATTTGAAGTTATTCTCAATGTTCAGTGACGCAAATA  248
      |||   |||  |||||||||||||||||||||||||||||||||||||||
seq2  AAA--GTGC--TACATTTGAAGTTATTCTCAATGTTCAGTGACGCAAATA  222

seq1  AGTCTGTAAGCCAAATATCCCCTGCAGTAAGGAACATCATTATGTGAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTAAGCCAAATATCCCCTGCAGTAAGGAACATCATTATGTGAACA  272

seq1  AAGTTTAGTTGACAGGAGATCAGGTCTATGGGCTTAGGTCTGTGACCTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGTTGACAGGAGATCAGGTCTATGGGCTTAGGTCTGTGACCTAA  322

seq1  GACTATGAAAATATAGAAAATCAGTAGAAACATATTGGCTAGAACTCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAAAATATAGAAAATCAGTAGAAACATATTGGCTAGAACTCCAA  372

seq1  GTCCAGATTGGAAATAAAGGACATTCTTAATTGAAGACATAAATGTGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATTGGAAATAAAGGACATTCTTAATTGAAGACATAAATGTGTAG  422

seq1  TATATTCATCTTAAATCATAATGGAAATCTCTTTCATATATCTGAAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATCTTAAATCATAATGGAAATCTCTTTCATATATCTGAAAAAA  472

seq1  AATATATTGTGTCACATTTATGATTACTTTAGAGTAAGGGTATATAATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGTGTCACATTTATGATTACTTTAGAGTAAGGGTATATAATCA  522

seq1  TATTTTCCCTAATAATTCTTGAGTAAGATGTTTATTTTTTGATTTTTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCTAATAATTCTTGAGTAAGATGTTTATTTTTTGATTTTTCAT  572

seq1  ATTAGCTATATCCTACATTTCTATATACCCTCCAAGTATTTCTTATATAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTATATCCTACATTTCTATATACCCTCCAAGTATTTCTTATATAG  622

seq1  AGAGAATATTTTGGACAATGAATGTACTTAGAGTCATATCTACACAGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATTTTGGACAATGAATGTACTTAGAGTCATATCTACACAGAAT  672

seq1  ACACACTTTGTGTTTCTGTAGTGCACCTGAGACTGGTACTTTTAAAATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTTGTGTTTCTGTAGTGCACCTGAGACTGGTACTTTTAAAATAC  722

seq1  AACCCTATTGCTTTAAACTGGCTCATTTTATACTTAACTAAAACAGTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATTGCTTTAAACTGGCTCATTTTATACTTAACTAAAACAGTAGT  772

seq1  AATGAGCATAGAAGATCAATCACATTTGTACAAATGTATAAACACTGTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATAGAAGATCAATCACATTTGTACAAATGTATAAACACTGTGG  822

seq1  TCAGCTGGGGGAAAATCATAGAAGATATTCAAAAAATTAGATGTGAATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGGGGAAAATCATAGAAGATATTCAAAAAATTAGATGTGAATAT  872

seq1  ATCATACTGTATAATTTTATTGTGCTCTATTTTGCAATTATCCATATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTGTATAATTTTATTGTGCTCTATTTTGCAATTATCCATATTTT  922

seq1  AATGCATGATTCTCATGGAATCTCAGTCATAATTCATAATAATATTACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGATTCTCATGGAATCTCAGTCATAATTCATAATAATATTACAG  972

seq1  TTTTAATCAGCAAGGGTCTATCTCAATTCATTCTTTTTAATGTTTCTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAGCAAGGGTCTATCTCAATTCATTCTTTTTAATGTTTCTTTT  1022

seq1  CTCATGAAATCTTACATTCTCAGAATCTTGAATGACAAACATAGATACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATCTTACATTCTCAGAATCTTGAATGACAAACATAGATACAG  1072

seq1  TGGAAGACCATTAGTGTAACTTCCAGAACCAATTAATTGTATTAGCAACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACCATTAGTGTAACTTCCAGAACCAATTAATTGTATTAGCAACA  1122

seq1  TGGTTCTAAATGAGTCTAGATGAGTCCAGTTTAGTTCTCATCCAATTAAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTAAATGAGTCTAGATGAGTCCAGTTTAGTTCTCATCCAATTAAA  1172

seq1  ACCCTTTGTGAATTC  1213
      |||||||||||||||
seq2  ACCCTTTGTGAATTC  1187

seq1: chr6_57825963_57827132
seq2: B6Ng01-108D21.g_64_1202

seq1  GAATTCTTAAGGATATGTAAATGTGAAAAATTACAGATAGACACTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGATATGTAAATGTGAAAAATTACAGATAGACACTAAATT  50

seq1  AGTTAATAATTGTATATTTTTAGCTTAAGTTACATATTATTAAACACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAATTGTATATTTTTAGCTTAAGTTACATATTATTAAACACTCA  100

seq1  CAGACAGTCAATTTGAGAAAAGTAAAATGAGAAAGTACAATTTATGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCAATTTGAGAAAAGTAAAATGAGAAAGTACAATTTATGATAA  150

seq1  CTTAATACTATGAAGGTAATCCTGCACACCAATAAGTGTGTTTCTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACTATGAAGGTAATCCTGCACACCAATAAGTGTGTTTCTTTGTT  200

seq1  TATCACCCTCTAAGGTATTTCAGTGTTTTGTTTCAGGATGGAAAATGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCCTCTAAGGTATTTCAGTGTTTTGTTTCAGGATGGAAAATGAGC  250

seq1  GCATTTGGAAATACTTATGTAGAACCATTTTGTTGTTTGTTGTCACTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGAAATACTTATGTAGAACCATTTTGTTGTTTGTTGTCACTCTA  300

seq1  AGGATATTACTATGAGCTCCCTAAATGTTGCATCTGGAGCAACTTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTACTATGAGCTCCCTAAATGTTGCATCTGGAGCAACTTTTTAC  350

seq1  ATGTATATGAATGTACAGTCCTTGTAAAATGATGGATTGCATGACATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGAATGTACAGTCCTTGTAAAATGATGGATTGCATGACATGTT  400

seq1  CACTGAATATATAATACCTATTTGTCATCTTTACTCTATTAGTCTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATATATAATACCTATTTGTCATCTTTACTCTATTAGTCTTTTCT  450

seq1  CTATCTTTAGCAACCTTTCTGCTAGGCCCTGCTCTTCTGAGTAGCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTAGCAACCTTTCTGCTAGGCCCTGCTCTTCTGAGTAGCCCCTT  500

seq1  TCTAGTGTTACCTATATAACCAGAGATCATATTAAGATAAATATATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTTACCTATATAACCAGAGATCATATTAAGATAAATATATACTT  550

seq1  TTTTATTAATCATTACATTGATACCTTTATGTCTACAAGTGTCTGTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAATCATTACATTGATACCTTTATGTCTACAAGTGTCTGTTGAA  600

seq1  TGCTTGTTATTCAGAGTGGCTCAAAAGTAATATTGCAAACAGAACTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTATTCAGAGTGGCTCAAAAGTAATATTGCAAACAGAACTCTCT  650

seq1  AATCATTTATTACAGAAAATCCTGCTTCCTTCTACCACACACTTTCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTATTACAGAAAATCCTGCTTCCTTCTACCACACACTTTCAGTT  700

seq1  CTCATTAAAATGAAGAGTAAGGAAACATTCACCCAGCTGGGCCTTTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAATGAAGAGTAAGGAAACATTCACCCAGCTGGGCCTTTTACA  750

seq1  AACATCCTTGTGGAATGAGGTCCCAAGAAGGAGTTATAAGGAACAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTGTGGAATGAGGTCCCAAGAAGGAGTTATAAGGAACAGATGT  800

seq1  CATCAGCTAGTATCCCTCTAGACCCACAGTTATCATGTCACCTGGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTAGTATCCCTCTAGACCCACAGTTATCATGTCACCTGGAGAAG  850

seq1  GCAGTTCTAACCTTGAGGTTGTTAGGAAGTAACACTATCAAATAGAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTAACCTTGAGGTTGTTAGGAAGTAACACTATCAAATAGAAAAG  900

seq1  TGAACTTCCCAAATTCCAGGAAAACAGTAGAGTAGGAACACCTGAGCTCT  950
      |||||||||| ||||||||| ||||||||||||||| |||||||||||||
seq2  TGAACTTCCC-AATTCCAGG-AAACAGTAGAGTAGG-ACACCTGAGCTCT  947

seq1  GGGTTTCCCATGTGTGAGCTATTCTCTCCATTCTATATCTGTCTTTGTGG  1000
      |||||| |||||||||||||| |||||| |||||||||||||| |||| |
seq2  GGGTTT-CCATGTGTGAGCTA-TCTCTCAATTCTATATCTGTC-TTGT-G  993

seq1  ATTAACTAATTCCTGTCATTGTGACCAAAAGTATTAACAATAACATGCCA  1050
      ||  |||||||||||||||||||||  |||||||  |||   ||||||||
seq2  AT--ACTAATTCCTGTCATTGTGAC--AAAGTAT--ACA--TACATGCCA  1035

seq1  CTTAAAAGTAGAAAACACTTTCAGATTCCCCATGGTATCCTTTCTGCTTC  1100
      | ||||||||| |||||| |||||||| ||||||  || |||||||||||
seq2  C-TAAAAGTAG-AAACAC-TTCAGATT-CCCATG--ATTCTTTCTGCTTC  1079

seq1  CAAAATATTCATTGTCCCTTCCATACTTACTTGACAG-TATCTTTAGTGT  1149
         || ||||| |||  ||| ||||||||| |||||| ||||||||   |
seq2  ---AAAATTCA-TGT--CTTTCATACTTAC-TGACAGATATCTTTAAGTT  1122

seq1  CTCCCCTAATAATTAACATTT  1170
      ||  ||||  |||||||||||
seq2  CT--CCTA--AATTAACATTT  1139