BAC Information

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BAC

Clone NameB6Ng01-108I19
Chromosome6 (Build37)
Map Location 121,719,081 - 121,720,175
singlet/doubletsinglet
Overlap geneEG640530
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m
Downstream geneMug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I19.bB6Ng01-108I19.g
ACCDH915706DH915707
length1,1631,086
definitionDH915706|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I19, 5' end.DH915707|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccgtaatcgtcagagaaatgcaaatcaaaacattcttgagat
tccatctcacaccagtcagaatggctaagaccaaaaattcagatgacagc
agatgctggcaaggatgttgagaaagaggaacactcctccattgttggtg
ggattccaagcttgtaaaaccactctggaaatcagtctgccagttcctct
gaaaattggacatagtactaccagaggatcccgcaatacctctcctggac
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcataacagccttatttatactagccagaagctggaaagaacccaggt
gcgcctcaacaaaggaatggatacaaaaaatgtggtagatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctagacaa
atggttggacctggaggacatcatcctgagtgaggtaacacaatcacaaa
aaactcaaacaatctgtactcactgataagtggatattagcccagaaact
tagtatacctgagatataagatacaatttgcaaaacacatgaaactgaag
aagaatgaagaccaaagtgtggacactttgccccttcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatta
gcctccaaatgatgacaccattgggtacactatcaagtgtttgttgaaag
gaccctgatataggtgtctcttgtgagactaggccagtgcctaggaaaca
aataagtggatgctcacagtcagctattggatggatcccagtgccccagt
ggaggagctagagaaagtatccaaggagctaagaaatctgcaccctgcag
tgcacacattatgactaacagttccctgagctcttactctagctgcatag
tatcaaagatggcctagtctgccatcagtgaaagagagccatcggactgc
accttatatgctccagtacagggatgtcagggccaaaagggattttggtg
gggtgagtggaga
gaattctgataccagcattcatgtaaatgacaggcaagaccagagggcct
tacaaccccagtgttgtggaggctagaggcaggagaattgctaggacttc
cttctgccaatttagctccaagattatgagggaaattttcaagataatga
ggtagaaagtgggagcagggcacccacaccctcctatggcctctgattgg
tgcacgggtgtatgcacctgcacacatgtgtgcattacaccacagtcaca
tacatgtgcacatacacccaaaatgtgttagttgaagaatttcagaaagc
ctaattgtccttttgttgctttggagtttgattgacacatttcctgtctt
cctaaaccattcccagggagaaaggggaaacaaggaacttcagttgtgtt
tctgacagtattcattatctggaaaaacagatgtgtgtgcagagatccag
ggtgaattcacgtggcaggtttcagggctgcaaaagcaggaaacctcact
gctatgcttgattttccttctcacaggtggacctgagcttcagctcatct
caaagtcttcccgcctcacaaacccgtctgcaggtcacagcttctcctca
gtccctctgtggcctgagagctgtggaccagagtgtgctgctcctgaagc
ccgaggctgagctctccccttcctgggtgagtccctttctacctctctcc
aaaaaccatccacagagtccagaagtgaccctggctctgatgaaacagtg
attgttcagacactagggctcttgaatgttaaaatactgcatttaatgct
gacagcgtctgtaagggagcacttcattgtaaaatcccgaataagggatt
ttaccctttagccaataaactgagacatgggaggaaataaggcgctctgt
gagctgcagagccttctgtgctcttactgcacctgtcgtgctccagagtg
gcttgtccccttagatgctcttggtggagcttttcagagtcacgctgcat
gtgggagtcaaagaactgtttacccagtagaatcttacagtctcagaagt
tctccaagtgagaaaacggaaggaatgattaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121719081_121720175
seq2: B6Ng01-108I19.g_65_1150

seq1  GAATTCTGATACCAGCATTCATGTAAATGACAGGCAAGACCAGAGGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACCAGCATTCATGTAAATGACAGGCAAGACCAGAGGGCCT  50

seq1  TACAACCCCAGTGTTGTGGAGGCTAGAGGCAGGAGAATTGCTAGGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCCCAGTGTTGTGGAGGCTAGAGGCAGGAGAATTGCTAGGACTTC  100

seq1  CTTCTGCCAATTTAGCTCCAAGATTATGAGGGAAATTTTCAAGATAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAATTTAGCTCCAAGATTATGAGGGAAATTTTCAAGATAATGA  150

seq1  GGTAGAAAGTGGGAGCAGGGCACCCACACCCTCCTATGGCCTCTGATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGTGGGAGCAGGGCACCCACACCCTCCTATGGCCTCTGATTGG  200

seq1  TGCACGGGTGTATGCACCTGCACACATGTGTGCATTACACCACAGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGGTGTATGCACCTGCACACATGTGTGCATTACACCACAGTCACA  250

seq1  TACATGTGCACATACACCCAAAATGTGTTAGTTGAAGAATTTCAGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGCACATACACCCAAAATGTGTTAGTTGAAGAATTTCAGAAAGC  300

seq1  CTAATTGTCCTTTTGTTGCTTTGGAGTTTGATTGACACATTTCCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTCCTTTTGTTGCTTTGGAGTTTGATTGACACATTTCCTGTCTT  350

seq1  CCTAAACCATTCCCAGGGAGAAAGGGGAAACAAGGAACTTCAGTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCATTCCCAGGGAGAAAGGGGAAACAAGGAACTTCAGTTGTGTT  400

seq1  TCTGACAGTATTCATTATCTGGAAAAACAGATGTGTGTGCAGAGATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTATTCATTATCTGGAAAAACAGATGTGTGTGCAGAGATCCAG  450

seq1  GGTGAATTCACGTGGCAGGTTTCAGGGCTGCAAAAGCAGGAAACCTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCACGTGGCAGGTTTCAGGGCTGCAAAAGCAGGAAACCTCACT  500

seq1  GCTATGCTTGATTTTCCTTCTCACAGGTGGACCTGAGCTTCAGCTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTTGATTTTCCTTCTCACAGGTGGACCTGAGCTTCAGCTCATCT  550

seq1  CAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTCA  600

seq1  GTCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGTGTGCTGCTCCTGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGTGTGCTGCTCCTGAAGC  650

seq1  CCGAGGCTGAGCTCTCCCCTTCCTGGGTGAGTCCCTTTCTACCTCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCTGAGCTCTCCCCTTCCTGGGTGAGTCCCTTTCTACCTCTCTCC  700

seq1  AAAAACCATCCACAGAGTCCAGAAGTGACCCTGGCTCTGATGAAACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCATCCACAGAGTCCAGAAGTGACCCTGGCTCTGATGAAACAGTG  750

seq1  ATTGTTCAGACACTAGGGCTCTTGAATGTTAAAATACTGCATTTAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAGACACTAGGGCTCTTGAATGTTAAAATACTGCATTTAATGCT  800

seq1  GACAGCGTCTGTAAGGGAGCACTTCATTGTAAAATCCCGAATAAGGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTCTGTAAGGGAGCACTTCATTGTAAAATCCCGAATAAGGGATT  850

seq1  TTACCCTTTAGCCAATAAACTGAAGACATGGGAGGAAATAAGGCGCTCTG  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTACCCTTTAGCCAATAAACTG-AGACATGGGAGGAAATAAGGCGCTCTG  899

seq1  TGAGCTGCAGAGCCTTCTGTGCTCTTACTGCACCTGTCGTGCCCCAGGAG  950
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  TGAGCTGCAGAGCCTTCTGTGCTCTTACTGCACCTGTCGTGCTCCA-GAG  948

seq1  TGGCTTGTCCCCTTCAGATGCTCTTGGTGGAGCTTTTCAGAGTCACGCTG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTCCCCTT-AGATGCTCTTGGTGGAGCTTTTCAGAGTCACGCTG  997

seq1  CATGTGGGAGTCAAAAGAAACTGTTTACACAAGTAGAATCTTACAGTCTC  1050
      |||||||||||||||   |||||||||| | |||||||||||||||||||
seq2  CATGTGGGAGTCAAA--GAACTGTTTAC-CCAGTAGAATCTTACAGTCTC  1044

seq1  AAGAGTTCCCCAAGTGAGAAAAACGGATAGAATGATTTAAATTTT  1095
      |  ||||| ||||||||| ||||||||  ||||||||  ||||||
seq2  AGAAGTTCTCCAAGTGAG-AAAACGGAAGGAATGATT--AATTTT  1086