BAC Information

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BAC

Clone NameB6Ng01-109B15
Chromosome6 (Build37)
Map Location 82,517,929 - 82,622,121
singlet/doubletdoublet
Overlap genePole4
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
Downstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B15.bB6Ng01-109B15.g
ACCDH916101DH916102
length1,1361,076
definitionDH916101|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B15, 5' end.DH916102|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,620,975 - 82,622,121)(82,517,929 - 82,519,030)
sequence
gaattctcactttaatattcatattaatcacaatgtttctaccagacatg
aatattcatctctctacacagtggctaatccattcagtgccataggcact
gaatctagaaacatcttcaaaaggacttgagataatttgcctctaagaca
ttctgttctcaaggccctcaagtcaatagagtttttacagactgctgcat
gctgaggtaattatctccccattgacttggagcaaggtcagctgctgtgt
ctgctcctgagtgacactatgacatatcagcaccccctagcatgttagtg
tggtcaggaaggaagggcagtaggtgtgttttgtctccatggtttctgat
ctctgtgggcacatttatttactaggtataacttctggtacacaaaggcc
atgtgacccctatcactcgccatcacatttgtttattatttgtgtacgga
gtgaggcatgtgcatgtgtggaggtctgacaaccttgagagccagttctc
tcctcctaccatgtgggttctgggactcaaactcaggccctcaggcctgg
tggcatgtacctttattcactaagccttgttgctgtaactgtcattcttt
atatatcatcttgtcattctctgaaatcttataatgaacaaaattttttt
tcattctttttcaggttagtcttatcatttttaagattataaaatgacat
gcatttactgtaaccagagagacgatgtttagatctgaagagaaaaattt
agtaattccatcctctctcaactctctccctatccccatgaagtaataac
aattgggcaatagtgtcatgtataagtttgtacatcttccatatttcatg
atcatcacacacacaaaatacatatatatatacacaaacatgcacgtaca
cacacacacacacacacacacacacacacacacacactacccaggggtaa
gacgtgactgcagggaagggatcttcttaatactatgaggaaattactaa
ataaaacaaaccactcagtttcctgtatccaaagattcaatggtgaagtg
gaaactctgttctttgtgacctcagctttgtcaaaatgctgtttttctgg
aactgtcctaaaaggtgtttgtgctgacgacacatg
gaattccttccatgaacaacaatgtggaggtggaagccgaataaaccctt
tcctctccaacttgctttttttttttttttttttttggtcatgatgttcg
gtcacagcaatagaaaccagaaaacaatttgggtctttagtattaaagca
aaggatgtcatcaaaagactcaggatccaacagcagcgatctacttttag
aaaaggccacactggtggcagagaccaattaggggatataggattaatgc
tgacctctgaaagtgaaagggcatctctagctgggcctgactcggggatg
aaagtgcaggccaatcaacagtcatcaacagtcaatctgagaagaactga
agtaaaaaatgtagacaggagacctgaccaagtgaaagcaaaggcactaa
aaagcatgaaagatggatcagtacgtaaagatacttgctatcatcaaagc
ggacctgagttcaattactggaacccatgtggtaagcaagaactaatatc
tgcaagctgtcttctgacctacgtacacatttacatgctgtgataatgca
tatgagcacacacacaatctaagaaatcaaaatcaggaagaactaagact
gtgtcctcattaggtttttattactgtgataaataagaccatgaccaaaa
gcaacttggggaggaaagggtttgtttaggcctatacatcctgatcacag
caggacctatgcagtgcaagaacactggcttgctcagcttgctttcttct
gcagcccatggctggcacctgcccatgggctgagccatcctacattaatc
atcaatcaagaaaatgcccccacagacatgcccacagacaatctaatggt
gtcaattccctaactgtggttctctcttcccagatcactctcatttgtgt
caattattctctcaaaataagtagtaagtaagtaaactaccagcacagac
tcccatgccagttacagttctaggactttctagccttctacaaaactgga
caggacaatgcttctatcagatgtcgttctaggaattgcaagccagccat
gagagccatccccactctgtacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82620975_82622121
seq2: B6Ng01-109B15.b_50_1185 (reverse)

seq1  CATGTGTCTGCTTCAGCACAAACAACCTCTTTTAAGACAGTTTCCAGAAA  50
      |||||||   | ||||||||||||    |||||| ||||| |||||||||
seq2  CATGTGT---CGTCAGCACAAACA---CCTTTTAGGACAG-TTCCAGAAA  43

seq1  AACAGCA-TATGACACAGCTGAGTCTACAAAGAAACCAGAAATTTCCACT  99
      ||||||| | ||||| |||||||   ||||||||  ||| | ||||||||
seq2  AACAGCATTTTGACAAAGCTGAGGTCACAAAGAA--CAG-AGTTTCCACT  90

seq1  TCAACCATGGAATCTTTGGATACAGAAAACTGAGTGGTTTGTTTTATTTA  149
      || ||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TC-ACCATTGAATCTTTGGATACAGGAAACTGAGTGGTTTGTTTTATTTA  139

seq1  GTAATTTCCTCATAGTATTAAAGAAGATCCCTTCCCTGCAGTCACGTCTT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAATTTCCTCATAGTATT-AAGAAGATCCCTTCCCTGCAGTCACGTCTT  188

seq1  ACCCCTGGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  238

seq1  TACGTGCATGTTTGTGTATATATATATGTATTTTGTGTGTGTGATGATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCATGTTTGTGTATATATATATGTATTTTGTGTGTGTGATGATCA  288

seq1  TGAAATATGGAAGATGTACAAACTTATACATGACACTATTGCCCAATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGGAAGATGTACAAACTTATACATGACACTATTGCCCAATTGT  338

seq1  TATTACTTCATGGGGATAGGGAGAGAGTTGAGAGAGGATGGAATTACTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCATGGGGATAGGGAGAGAGTTGAGAGAGGATGGAATTACTAA  388

seq1  ATTTTTCTCTTCAGATCTAAACATCGTCTCTCTGGTTACAGTAAATGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCTTCAGATCTAAACATCGTCTCTCTGGTTACAGTAAATGCAT  438

seq1  GTCATTTTATAATCTTAAAAATGATAAGACTAACCTGAAAAAGAATGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTATAATCTTAAAAATGATAAGACTAACCTGAAAAAGAATGAAA  488

seq1  AAAAATTTTGTTCATTATAAGATTTCAGAGAATGACAAGATGATATATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTGTTCATTATAAGATTTCAGAGAATGACAAGATGATATATAA  538

seq1  AGAATGACAGTTACAGCAACAAGGCTTAGTGAATAAAGGTACATGCCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAGTTACAGCAACAAGGCTTAGTGAATAAAGGTACATGCCACC  588

seq1  AGGCCTGAGGGCCTGAGTTTGAGTCCCAGAACCCACATGGTAGGAGGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAGGGCCTGAGTTTGAGTCCCAGAACCCACATGGTAGGAGGAGA  638

seq1  GAACTGGCTCTCAAGGTTGTCAGACCTCCACACATGCACATGCCTCACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTCTCAAGGTTGTCAGACCTCCACACATGCACATGCCTCACTC  688

seq1  CGTACACAAATAATAAACAAATGTGATGGCGAGTGATAGGGGTCACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACAAATAATAAACAAATGTGATGGCGAGTGATAGGGGTCACATGG  738

seq1  CCTTTGTGTACCAGAAGTTATACCTAGTAAATAAATGTGCCCACAGAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTACCAGAAGTTATACCTAGTAAATAAATGTGCCCACAGAGAT  788

seq1  CAGAAACCATGGAGACAAAACACACCTACTGCCCTTCCTTCCTGACCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCATGGAGACAAAACACACCTACTGCCCTTCCTTCCTGACCACA  838

seq1  CTAACATGCTAGGGGGTGCTGATATGTCATAGTGTCACTCAGGAGCAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGCTAGGGGGTGCTGATATGTCATAGTGTCACTCAGGAGCAGAC  888

seq1  ACAGCAGCTGACCTTGCTCCAAGTCAATGGGGAGATAATTACCTCAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTGACCTTGCTCCAAGTCAATGGGGAGATAATTACCTCAGCAT  938

seq1  GCAGCAGTCTGTAAAAACTCTATTGACTTGAGGGCCTTGAGAACAGAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTCTGTAAAAACTCTATTGACTTGAGGGCCTTGAGAACAGAATG  988

seq1  TCTTAGAGGCAAATTATCTCAAGTCCTTTTGAAGATGTTTCTAGATTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGGCAAATTATCTCAAGTCCTTTTGAAGATGTTTCTAGATTCAG  1038

seq1  TGCCTATGGCACTGAATGGATTAGCCACTGTGTAGAGAGATGAATATTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGGCACTGAATGGATTAGCCACTGTGTAGAGAGATGAATATTCA  1088

seq1  TGTCTGGTAGAAACATTGTGATTAATATGAATATTAAAGTGAGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTAGAAACATTGTGATTAATATGAATATTAAAGTGAGAATTC  1136

seq1: chr6_82517929_82519030
seq2: B6Ng01-109B15.g_66_1141

seq1  GAATTCCTTCCATGAACAACAATGTGGAGGTGGAAGCCGAATAAACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCATGAACAACAATGTGGAGGTGGAAGCCGAATAAACCCTT  50

seq1  TCCTCTCCAACTTGCTTTTTTTTTTTTTTTTTTTTTGGTCATGATGTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCAACTTGCTTTTTTTTTTTTTTTTTTTTTGGTCATGATGTTCG  100

seq1  GTCACAGCAATAGAAACCAGAAAACAATTTGGGTCTTTAGTATTAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCAATAGAAACCAGAAAACAATTTGGGTCTTTAGTATTAAAGCA  150

seq1  AAGGATGTCATCAAAAGACTCAGGATCCAACAGCAGCGATCTACTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCATCAAAAGACTCAGGATCCAACAGCAGCGATCTACTTTTAG  200

seq1  AAAAGGCCACACTGGTGGCAGAGACCAATTAGGGGATATAGGATTAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCACACTGGTGGCAGAGACCAATTAGGGGATATAGGATTAATGC  250

seq1  TGACCTCTGAAAGTGAAAGGGCATCTCTAGCTGGGCCTGACTCGGGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGAAAGTGAAAGGGCATCTCTAGCTGGGCCTGACTCGGGGATG  300

seq1  AAAGTGCAGGCCAATCAACAGTCATCAACAGTCAATCTGAGAAGAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAGGCCAATCAACAGTCATCAACAGTCAATCTGAGAAGAACTGA  350

seq1  AGTAAAAAATGTAGACAGGAGACCTGACCAAGTGAAAGCAAAGGCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAATGTAGACAGGAGACCTGACCAAGTGAAAGCAAAGGCACTAA  400

seq1  AAAGCATGAAAGATGGATCAGTACGTAAAGATACTTGCTATCATCAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAAAGATGGATCAGTACGTAAAGATACTTGCTATCATCAAAGC  450

seq1  GGACCTGAGTTCAATTACTGGAACCCATGTGGTAAGCAAGAACTAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGTTCAATTACTGGAACCCATGTGGTAAGCAAGAACTAATATC  500

seq1  TGCAAGCTGTCTTCTGACCTACGTACACATTTACATGCTGTGATAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCTGTCTTCTGACCTACGTACACATTTACATGCTGTGATAATGCA  550

seq1  TATGAGCACACACACAATCTAAGAAATCAAAATCAGGAAGAACTAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACACACACAATCTAAGAAATCAAAATCAGGAAGAACTAAGACT  600

seq1  GTGTCCTCATTAGGTTTTTATTACTGTGATAAATAAGACCATGACCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCATTAGGTTTTTATTACTGTGATAAATAAGACCATGACCAAAA  650

seq1  GCAACTTGGGGAGGAAAGGGTTTGTTTAGGCCTATACATCCTGATCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGGGGAGGAAAGGGTTTGTTTAGGCCTATACATCCTGATCACAG  700

seq1  CAGGACCTATGCAGTGCAAGAACACTGGCTTGCTCAGCTTGCTTTCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTATGCAGTGCAAGAACACTGGCTTGCTCAGCTTGCTTTCTTCT  750

seq1  GCAGCCCATGGCTGGCACCTGCCCATGGGCTGAGCCATCCTACATTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATGGCTGGCACCTGCCCATGGGCTGAGCCATCCTACATTAATC  800

seq1  ATCAATCAAGAAAATGCCCCCACAGACATGCCCACAAGACAATCTAATGG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCAATCAAGAAAATGCCCCCACAGACATGCCCAC-AGACAATCTAATGG  849

seq1  TGTCAATTCCTTAACTGTGGTTCTCTCTTCCCAGATCACTCTCATTTGTG  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTCCCTAACTGTGGTTCTCTCTTCCCAGATCACTCTCATTTGTG  899

seq1  TCAAATTATTCTCTCAAAATAAGTAAGTAAGTAAGTAAAACTAACCAGCA  950
      || ||||||||||||||||||||| ||||||||||| ||||| |||||||
seq2  TC-AATTATTCTCTCAAAATAAGT-AGTAAGTAAGT-AAACT-ACCAGCA  945

seq1  CAGACTCCCATGGCCAGTTACAGTTCCTAGGGACTTTTCATAGGCCTTCT  1000
      ||||||||||| ||||||||||||| ||| |||||||  |   |||||||
seq2  CAGACTCCCAT-GCCAGTTACAGTT-CTA-GGACTTTCTA---GCCTTCT  989

seq1  AACAAAAACTGGACAAAGACCAGGGTGCTTCTATCGAGATTGGTTCGTTC  1050
      |   |||||||||| | ||| |   |||||||||| ||||    ||||||
seq2  A--CAAAACTGGAC-AGGACAA---TGCTTCTATC-AGAT---GTCGTTC  1029

seq1  TTAGGAATATTGCAAGCCAAGCCAATGGAGAGCC-TACCCACTCTGTACA  1099
       |||||  |||||||||| |||||   ||||||| | |||||||||||||
seq2  -TAGGA--ATTGCAAGCC-AGCCA--TGAGAGCCATCCCCACTCTGTACA  1073

seq1  TGT  1102
      |||
seq2  TGT  1076