BAC Information

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BAC

Clone NameB6Ng01-109B18
Chromosome6 (Build37)
Map Location 9,414,838 - 9,572,879
singlet/doubletdoublet
Overlap genenone
Upstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B18.bB6Ng01-109B18.g
ACCDH916107DH916108
length1,1371,067
definitionDH916107|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B18, 5' end.DH916108|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,571,734 - 9,572,879)(9,414,838 - 9,415,906)
sequence
gaattctcaaaatttcaaaggtaactgattctatagtttgatactggaaa
gacacagcaacaataacaaaactaagctagaccaatatccttcatgaaaa
tagatataaacagattaaacaaaatactctcaaacaaaataggtcatatg
ataatcatgtgaaagttactctagagagtatgtgtcaacaaatattgata
agtgatgtgatatataacaataatgtcacaaaggacaaaattccaaaaat
agaatggatacataaaatctaaccatgcaataaaagaattgcagaaaaac
aaaaacacaataattcttaaacattagcagggtgatggtgtcataccctc
taatcccagcactccagaagcaaagagatgaagatgtgtaagttcaaagt
cagcttgatctatacgccaagttccaggacagtcaggactttagggagaa
acgctgtcttggaaaaaaaaaataaagtaatcttaaaagtcacagaatgg
ggctttggagaattctgaatgagtaaaggtgcgctgctaagactgatagc
ctgagctgaaccccaggactcacactgtagaaagggaaagcaactaagag
ttgacctttgacttttcctcgcctacaagtaagtaataaatgtaagtaca
agtgaaaaggctacagagtgaattctcttcaaaggaaaaatagacagaca
ttttcagaagatacctttataaagcatgtgtttttgtatacttttattac
caattaaaacatttcaaattaggaaagaatgatatcttgagactggtgct
ggcagcaaaggctttagaattggcgaggtaggggaatctgagtatttaag
accaaggactatatgtctaatcagtcttcaaaacaaagatattttacttg
tagacactaggctaaaataagtataacccatgtagaaatgctttcagatt
tagtttgtagtcagcttctcattgatgatcaacataagcagcatgagcaa
tgtgagaaaccaatataaaaagagtttcattctgtgtcagaatgtagacg
tttcatattcgtaatcaacaagccttatgaatttttatgttttatatttt
tttaataggattttcttcatttacatttcagtgctat

gaattcactccgttgaccaggctggcctcgacctcagaaatcagaatcaa
ctccgttgaccaggctgcctctgcctcccaagtgctgggattaagggtgt
gtctgaccacagcttggtgacagacatgtcttaattatcagtgcagtcat
cccttaacatcaagtggggaatgattcagggatgtaaaacatagacccga
gtcaagctatgtatagtcaagtgtgtagatgttaccaactgtgtatttat
agataatgcgggacttccttcacaatacagactcttgatcttgtttgtgg
ttctgcaaaggcaagagaagacagagactgtgtgcctttgtttccaaaag
aaggtacagaacagaacattcttcactgattcctttccaaaattgaaagt
tagaacaaagattccttgacccattgtgatcttactggtatacagaataa
gaaattctgctaccagttttgctgtcccttcgggcatacttttgttttgt
ttagtaatattaatagtagtaagtttttactgatatttttaaattttgtt
ttaactttattcacagacttagcagaaacaattgatttctgtaaagtaac
tctccatatcttctgtgaataggagaaatgttacctaagtaggatcagag
ctgctgatagagaagtctgggaagaaatgggtggggctacactggtgagg
cattgtcactcttttaaagtagagagccacgtggctgtgcaacacctgag
acaagtgtgggactattgactatttctagccttactggctttgatgctat
caaaacagcattctttcatttttcttaatgtaacataattagataatgtt
atgtttatatttattatgctatgccaactttccattgatcttcagggtac
aatttgaaaatgccagtaattaaatgttttcatcacttaaaagtcagcaa
taaagaaaaacatcttgttctttatatgattacattatcaattaatttgg
aatgtattagttagtgaggctgtctgatttacaaaaaaaagcataattct
gaaagtatgatagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9571734_9572879
seq2: B6Ng01-109B18.b_47_1183 (reverse)

seq1  ATAGCACTGGAAATGTAAATGAAGAAAATACCTAATAAAAAATAATTAAA  50
      |||||||| |||||||||||||||||||| |||| ||||||| |  ||||
seq2  ATAGCACT-GAAATGTAAATGAAGAAAAT-CCTATTAAAAAA-ATATAAA  47

seq1  ACCAATAAAAATCAATAAGGCTTGTTGATTACGAATATGAAACGTCTACA  100
      ||  ||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AC--ATAAAAATTCATAAGGCTTGTTGATTACGAATATGAAACGTCTACA  95

seq1  TTCTTGACACAGAATGAAACTTCTTTTTTATATTGGTTTCTCACATTGCT  150
      ||| |||||||||||||||||   ||||||||||||||||||||||||||
seq2  TTC-TGACACAGAATGAAACT--CTTTTTATATTGGTTTCTCACATTGCT  142

seq1  CATGCTGCTTATGTTGATCATCAATGAGAAGCTGACTAACAAACTAAATC  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATGCTGCTTATGTTGATCATCAATGAGAAGCTGACT-ACAAACTAAATC  191

seq1  TGAAAGCATTTCTACATGGGTTTATACTTATTTTAGCCTAGTGTCTACAA  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAAGCATTTCTACATGGG-TTATACTTATTTTAGCCTAGTGTCTACAA  240

seq1  GTAAAATATCTTTGTTTTGAAGACTGATTAGACATATAGTCCTTGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATCTTTGTTTTGAAGACTGATTAGACATATAGTCCTTGGTCTT  290

seq1  AAATACTCAGATT-CCCTACCTCGCCAATTCTAAAGCCTTTGCTGCCAGC  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATACTCAGATTCCCCTACCTCGCCAATTCTAAAGCCTTTGCTGCCAGC  340

seq1  ACCAGTCTCAAGATATCATTCTTTCCTAATTTGAAATGTTTTAATTGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTCAAGATATCATTCTTTCCTAATTTGAAATGTTTTAATTGGTA  390

seq1  ATAAAAGTATACAAAAACACATGCTTTATAAAGGTATCTTCTGAAAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTATACAAAAACACATGCTTTATAAAGGTATCTTCTGAAAATGT  440

seq1  CTGTCTATTTTTCCTTTGAAGAGAATTCACTCTGTAGCCTTTTCACTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATTTTTCCTTTGAAGAGAATTCACTCTGTAGCCTTTTCACTTGT  490

seq1  ACTTACATTTATTACTTACTTGTAGGCGAGGAAAAGTCAAAGGTCAACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTTATTACTTACTTGTAGGCGAGGAAAAGTCAAAGGTCAACTC  540

seq1  TTAGTTGCTTTCCCTTTCTACAGTGTGAGTCCTGGGGTTCAGCTCAGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCTTTCCCTTTCTACAGTGTGAGTCCTGGGGTTCAGCTCAGGCT  590

seq1  ATCAGTCTTAGCAGCGCACCTTTACTCATTCAGAATTCTCCAAAGCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTTAGCAGCGCACCTTTACTCATTCAGAATTCTCCAAAGCCCCA  640

seq1  TTCTGTGACTTTTAAGATTACTTTATTTTTTTTTTCCAAGACAGCGTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACTTTTAAGATTACTTTATTTTTTTTTTCCAAGACAGCGTTTC  690

seq1  TCCCTAAAGTCCTGACTGTCCTGGAACTTGGCGTATAGATCAAGCTGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAGTCCTGACTGTCCTGGAACTTGGCGTATAGATCAAGCTGACT  740

seq1  TTGAACTTACACATCTTCATCTCTTTGCTTCTGGAGTGCTGGGATTAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTACACATCTTCATCTCTTTGCTTCTGGAGTGCTGGGATTAGAG  790

seq1  GGTATGACACCATCACCCTGCTAATGTTTAAGAATTATTGTGTTTTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGACACCATCACCCTGCTAATGTTTAAGAATTATTGTGTTTTTGTT  840

seq1  TTTCTGCAATTCTTTTATTGCATGGTTAGATTTTATGTATCCATTCTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAATTCTTTTATTGCATGGTTAGATTTTATGTATCCATTCTATT  890

seq1  TTTGGAATTTTGTCCTTTGTGACATTATTGTTATATATCACATCACTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTTGTCCTTTGTGACATTATTGTTATATATCACATCACTTAT  940

seq1  CAATATTTGTTGACACATACTCTCTAGAGTAACTTTCACATGATTATCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTGTTGACACATACTCTCTAGAGTAACTTTCACATGATTATCAT  990

seq1  ATGACCTATTTTGTTTGAGAGTATTTTGTTTAATCTGTTTATATCTATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTATTTTGTTTGAGAGTATTTTGTTTAATCTGTTTATATCTATTT  1040

seq1  TCATGAAGGATATTGGTCTAGCTTAGTTTTGTTATTGTTGCTGTGTCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGGATATTGGTCTAGCTTAGTTTTGTTATTGTTGCTGTGTCTTT  1090

seq1  CCAGTATCAAACTATAGAATCAGTTACCTTTGAAATTTTGAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCAAACTATAGAATCAGTTACCTTTGAAATTTTGAGAATTC  1137


seq1: chr6_9414838_9415906
seq2: B6Ng01-109B18.g_68_1134

seq1  GAATTCACTCCGTTGACCAGGCTGGCCTCGACCTCAGAAATCAGAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCGTTGACCAGGCTGGCCTCGACCTCAGAAATCAGAATCAA  50

seq1  CTCCGTTGACCAGGCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTGACCAGGCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGGTGT  100

seq1  GTCTGACCACAGCTTGGTGACAGACATGTCTTAATTATCAGTGCAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCACAGCTTGGTGACAGACATGTCTTAATTATCAGTGCAGTCAT  150

seq1  CCCTTAACATCAAGTGGGGAATGATTCAGGGATGTAAAACATAGACCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACATCAAGTGGGGAATGATTCAGGGATGTAAAACATAGACCCGA  200

seq1  GTCAAGCTATGTATAGTCAAGTGTGTAGATGTTACCAACTGTGTATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTATGTATAGTCAAGTGTGTAGATGTTACCAACTGTGTATTTAT  250

seq1  AGATAATGCGGGACTTCCTTCACAATACAGACTCTTGATCTTGTTTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGCGGGACTTCCTTCACAATACAGACTCTTGATCTTGTTTGTGG  300

seq1  TTCTGCAAAGGCAAGAGAAGACAGAGACTGTGTGCCTTTGTTTCCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAGGCAAGAGAAGACAGAGACTGTGTGCCTTTGTTTCCAAAAG  350

seq1  AAGGTACAGAACAGAACATTCTTCACTGATTCCTTTCCAAAATTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAGAACAGAACATTCTTCACTGATTCCTTTCCAAAATTGAAAGT  400

seq1  TAGAACAAAGATTCCTTGACCCATTGTGATCTTACTGGTATACAGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAAGATTCCTTGACCCATTGTGATCTTACTGGTATACAGAATAA  450

seq1  GAAATTCTGCTACCAGTTTTGCTGTCCCTTCGGGCATACTTTTGTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGCTACCAGTTTTGCTGTCCCTTCGGGCATACTTTTGTTTTGT  500

seq1  TTAGTAATATTAATAGTAGTAAGTTTTTACTGATATTTTTAAATTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATATTAATAGTAGTAAGTTTTTACTGATATTTTTAAATTTTGTT  550

seq1  TTAACTTTATTCACAGACTTAGCAGAAACAATTGATTTCTGTAAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTATTCACAGACTTAGCAGAAACAATTGATTTCTGTAAAGTAAC  600

seq1  TCTCCATATCTTCTGTGAATAGGAGAAATGTTACCTAAGTAGGATCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATCTTCTGTGAATAGGAGAAATGTTACCTAAGTAGGATCAGAG  650

seq1  CTGCTGATAGAGAAGTCTGGGAAGAAATGGGTGGGGCTACACTGGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATAGAGAAGTCTGGGAAGAAATGGGTGGGGCTACACTGGTGAGG  700

seq1  CATTGTCACTCTTTTAAAGTAGAGAGCCACGTGGCTGTGCAACACCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCACTCTTTTAAAGTAGAGAGCCACGTGGCTGTGCAACACCTGAG  750

seq1  ACAAGTGTGGGACTATTGACTATTTCTAGCCTTACTGGCTTTGATGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGGGACTATTGACTATTTCTAGCCTTACTGGCTTTGATGCTAT  800

seq1  CAAAACAGCATTCTTTCATTTTTCTTAATGTAACATAATTAGATAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGCATTCTTTCATTTTTCTTAATGTAACATAATTAGATAATGTT  850

seq1  ATGTTTATATTTATTATGCTATGCCAACTTTCCATTGATCTTCAGGGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATATTTATTATGCTATGCCAACTTTCCATTGATCTTCAGGGTAC  900

seq1  AATTTGAAAATGCCAGTAATTAAATGTTTTCAATCACTTAAAAGTCAGCA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTTGAAAATGCCAGTAATTAAATGTTTTC-ATCACTTAAAAGTCAGCA  949

seq1  ATAAAGAAAAACATCTTGTTCTTTATATGAATACATTATCAATTTAATTT  1000
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ATAAAGAAAAACATCTTGTTCTTTATATGATTACATTATCAA-TTAATTT  998

seq1  GGAATGTTATAGTTAGTGAGGCTGGTCTGATTTAC-AAAAAAAGCATAAT  1049
      |||||||  |||||||||||||| ||||||||||| ||||||||||||||
seq2  GGAATGTATTAGTTAGTGAGGCT-GTCTGATTTACAAAAAAAAGCATAAT  1047

seq1  TCTGAAAGTATGATAGAATA  1069
      ||||||||||||||||||||
seq2  TCTGAAAGTATGATAGAATA  1067


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