BAC Information

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BAC

Clone NameB6Ng01-109K18
Chromosome6 (Build37)
Map Location 77,499,764 - 77,644,535
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K18.bB6Ng01-109K18.g
ACCDH916518DH916519
length1,120312
definitionDH916518|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K18, 5' end.DH916519|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,643,407 - 77,644,535)(77,499,764 - 77,500,075)
sequence
gaattccacattctggtgcatcttttcttaatttggtaagaaatttgatt
catacaccatcatatgtttttctttttatttcctccttttcttggcattt
ctggaatttccattccaattaaatattatggtagggctcaaaggaaagtt
tattttcaaaagtggtagttcagttgccaggaaacagcatgtcagtagta
agaaatagaactagaaatgacagatggaagctgtagctttcccacttggc
cagaatcttcactttgagattgtctttcagctagctcataaaggatgcag
aatctccagccagctctggcttctctacatctcacatgatgtgcttactt
ctgatgtaatattgtgtgatttttcctggggagacatgaatgtctcttta
ccccagactgggtactggtcacagaccaatgcaatggttctagccagatc
aaccttgggaattaatgggtttactatgagtcacatgacacataggcagc
cacatcattgaaaagcccactgtagcaggaatgacaactcacaaaagaac
catcccttcctcaaactccctgccctctttgcagaaagcacctctgagta
ggctcgttcccaatagttgttaactgttttcgtaagcctaggaaaggacc
ctataaagcatgttaccttatgagagtcttgagatgtgtaggtcttgtta
ccattctgagtcttgggagcatccctcatttctccattaaagactgtttc
agtttatagaaagtaaaacccatataacaaatgtgtaaatgttcacatac
tcaaggaattatacttgcataattgatcataaaggcaaggataaagaaag
gcaaggaagttttggtctctctgtgcttattaagaaacgcatgatcataa
aaatttcatttcctggcttttcttgagaaaatataaaaatatctatttac
tcggatgtgaggggagcagtgatgtactaccgaacacactatcactctct
agcttagtgagcttgtgggatggcttaaagaagctgccagccaggcaagc
ccaaatcctgggaaccctctctctccaaatacgttagatagtagtaaaaa
ccgatgcttggtgaccatcg
tttcctggcatgggcaaagctctgtattgggtcatcagtgacttagctcc
ataccccaacacaactcaacctgaccaggcaaggaagaccaaacatccac
agggatgaaaagacagtgagaggaagcagcagagctgtttgctgaggctc
cgtgctataagttaacaaacttattttcaccagcttctcaagagtgtgct
ggccatcactggaaagagaggcccattggacacgcaaactgtatatgcca
cagtacaggggaacaccagggccaaaaaaaaatgggaatgagtgggtagg
gaagtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77643407_77644535
seq2: B6Ng01-109K18.b_48_1167 (reverse)

seq1  CGATGGTCACAAAACCATCGGGTTTTTACTACTTATTACTACGTATTTGT  50
      ||||||||||  || |||| |||||||||||||   ||  ||||||||| 
seq2  CGATGGTCAC-CAAGCATC-GGTTTTTACTACTATCTA--ACGTATTTGG  46

seq1  GGAGAGAGGTTCCCAAGGAATTTTGGGCTTGCCTGGCATGGCAGCTTCTT  100
       |||||||| | || ||||  |||||||||||||||| |||||||||| |
seq2  AGAGAGAGGGTTCCCAGGA--TTTGGGCTTGCCTGGC-TGGCAGCTTC-T  92

seq1  TTAAGCCATCCCACAAGCTCACTAAGCTAGAGAGTGATAGTGTGTTCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATCCCACAAGCTCACTAAGCTAGAGAGTGATAGTGTGTTCGGT  142

seq1  AGTACATCACTGCTCCCCTCACATCCGAGTAAATAGATATTTTTATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCACTGCTCCCCTCACATCCGAGTAAATAGATATTTTTATATTT  192

seq1  TCTCAAGAAAAGCCAGGAAATGAAATTTTTTATGATCATGCGTTTCTTAA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCAAGAAAAGCCAGGAAATGAAA-TTTTTATGATCATGCGTTTCTTAA  241

seq1  TAAGCACAGAGAGACCAAAACTTCCTTGCCTTTCTTTATCCTTGCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAGAGAGACCAAAACTTCCTTGCCTTTCTTTATCCTTGCCTTTA  291

seq1  TGATCAATTATGCAAGTATAATTCCTTGAGTATGTGAACATTTACACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATTATGCAAGTATAATTCCTTGAGTATGTGAACATTTACACATT  341

seq1  TGTTATATGGGTTTTACTTTCTATAAACTGAAACAGTCTTTAATGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATGGGTTTTACTTTCTATAAACTGAAACAGTCTTTAATGGAGAA  391

seq1  ATGAGGGATGCTCCCAAGACTCAGAATGGTAACAAGACCTACACATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGATGCTCCCAAGACTCAGAATGGTAACAAGACCTACACATCTCA  441

seq1  AGACTCTCATAAGGTAACATGCTTTATAGGGTCCTTTCCTAGGCTTACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCATAAGGTAACATGCTTTATAGGGTCCTTTCCTAGGCTTACGA  491

seq1  AAACAGTTAACAACTATTGGGAACGAGCCTACTCAGAGGTGCTTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTAACAACTATTGGGAACGAGCCTACTCAGAGGTGCTTTCTGCA  541

seq1  AAGAGGGCAGGGAGTTTGAGGAAGGGATGGTTCTTTTGTGAGTTGTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCAGGGAGTTTGAGGAAGGGATGGTTCTTTTGTGAGTTGTCATT  591

seq1  CCTGCTACAGTGGGCTTTTCAATGATGTGGCTGCCTATGTGTCATGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACAGTGGGCTTTTCAATGATGTGGCTGCCTATGTGTCATGTGAC  641

seq1  TCATAGTAAACCCATTAATTCCCAAGGTTGATCTGGCTAGAACCATTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAAACCCATTAATTCCCAAGGTTGATCTGGCTAGAACCATTGCA  691

seq1  TTGGTCTGTGACCAGTACCCAGTCTGGGGTAAAGAGACATTCATGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGTGACCAGTACCCAGTCTGGGGTAAAGAGACATTCATGTCTCC  741

seq1  CCAGGAAAAATCACACAATATTACATCAGAAGTAAGCACATCATGTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAAATCACACAATATTACATCAGAAGTAAGCACATCATGTGAGA  791

seq1  TGTAGAGAAGCCAGAGCTGGCTGGAGATTCTGCATCCTTTATGAGCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAAGCCAGAGCTGGCTGGAGATTCTGCATCCTTTATGAGCTAGC  841

seq1  TGAAAGACAATCTCAAAGTGAAGATTCTGGCCAAGTGGGAAAGCTACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACAATCTCAAAGTGAAGATTCTGGCCAAGTGGGAAAGCTACAGC  891

seq1  TTCCATCTGTCATTTCTAGTTCTATTTCTTACTACTGACATGCTGTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGTCATTTCTAGTTCTATTTCTTACTACTGACATGCTGTTTCC  941

seq1  TGGCAACTGAACTACCACTTTTGAAAATAAACTTTCCTTTGAGCCCTACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTGAACTACCACTTTTGAAAATAAACTTTCCTTTGAGCCCTACC  991

seq1  ATAATATTTAATTGGAATGGAAATTCCAGAAATGCCAAGAAAAGGAGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTAATTGGAATGGAAATTCCAGAAATGCCAAGAAAAGGAGGAA  1041

seq1  ATAAAAAGAAAAACATATGATGGTGTATGAATCAAATTTCTTACCAAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAAAACATATGATGGTGTATGAATCAAATTTCTTACCAAATT  1091

seq1  AAGAAAAGATGCACCAGAATGTGGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  AAGAAAAGATGCACCAGAATGTGGAATTC  1120

seq1: chr6_77499764_77500075
seq2: B6Ng01-109K18.g_74_385

seq1  TTTCCTGGCATGGGCAAAGCTCTGTATTGGGTCATCAGTGACTTAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCATGGGCAAAGCTCTGTATTGGGTCATCAGTGACTTAGCTCC  50

seq1  ATACCCCAACACAACTCAACCTGACCAGGCAAGGAAGACCAAACATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAACACAACTCAACCTGACCAGGCAAGGAAGACCAAACATCCAC  100

seq1  AGGGATGAAAAGACAGTGAGAGGAAGCAGCAGAGCTGTTTGCTGAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAAAAGACAGTGAGAGGAAGCAGCAGAGCTGTTTGCTGAGGCTC  150

seq1  CGTGCTATAAGTTAACAAACTTATTTTCACCAGCTTCTCAAGAGTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTATAAGTTAACAAACTTATTTTCACCAGCTTCTCAAGAGTGTGCT  200

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTGTATATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTGTATATGCCA  250

seq1  CAGTACAGGGGAACACCAGGGCCAAAAAAAAATGGGAATGAGTGGGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGAACACCAGGGCCAAAAAAAAATGGGAATGAGTGGGTAGG  300

seq1  GAAGTGGGGGGG  312
      ||||||||||||
seq2  GAAGTGGGGGGG  312