BAC Information

Click to search

BAC

Clone NameB6Ng01-110E04
Chromosome6 (Build37)
Map Location 77,355,566 - 77,492,159
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110E04.bB6Ng01-110E04.g
ACCDH916931DH916932
length1,1781,182
definitionDH916931|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E04, 5' end.DH916932|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,355,566 - 77,356,754)(77,490,984 - 77,492,159)
sequence
gaattcttaaatgtgtttggctgcttcatccaatccattgtttgtcctct
gcacgctcccatatgaatgcgcaattgtaagagaaacagcaccccttctt
gagagtttacactctgatctaatcaagcattgataggaaatggtaaaatg
tgtggaaggtgtcacagtgatacataaggacattggaaggatagagaaag
aaggaagtaggaaataagaactagagaagaaaaagccctaagggataaag
ttagggatggaggaatataaagaaggacaaataattgagtgaagggaaag
gagggaaggaaaggacaacagaatgggaaactcaccaataggacacttct
ttacttttgatttaatctcaggtatgaaaaggatcatgaaggtgaagtgg
gaatcaacaaaaaacagtgacttaatatttccatccatataaatatttac
ccaaccagacgtccatcaaatattgaactcatattgttggctaaaaacca
tggcttagatctgagattcaatttgaacgtggcactctttgtgatatatt
gtttcatgttgtttctcaaaaaaaaaaaataaaaaataaaagaataataa
taaaaaaagaaaacaatctagaagaagcacccaagtgcagagagcaaaac
cacagagacagccagactcttcacagatgaaagtcctccattttcgcaca
tgagatctctttatcagacaagggttgtggtggcttgaatgaaaaccacc
agaagctctgtatttgaacatttgattcaaagtggtggccctctttgaaa
aggtttagaagatttggatttattcaaggagataagttactgaacatggg
cgttaagagtttagaacatcgtgctacttcctgcttgccctcactttctg
tttcatgtttgctgttggaatgattcctatgctatgcctgtctgctactg
tgacctcctgccaggatggatttatattcctctggtgccgtaagtaaaat
aaaatgtcctttttatagttgtctttgtcatagtgtcttttcagagcagc
acagaaagcatctaatacagggctgattatgcaggtgattactagagtat
ttaaggacccagctcctttctattttttgttgagttatgctttagaaagc
atgcagaatgtacttgctcagtctagta
gaattcatagtcaaagaagaatttaaaatgtaaagaatttacctgttttt
ttctgtttaatattattagatttgcattcttatatgtttttgaggaaata
ttccttaaaatcctagtatatgacagatactattctgcataaaaataaac
aaaaggggtgaacatccctgtcattgggtaatttatgttttaatgaataa
gccaattctgtgcacaaggtaagatttataaaggaattaagatgcaaagg
agccagcttgactatatgaagaggggagactgaggttgagaatgtaggct
aataatcatcagaagatgttctcagagtgagtattcatgcagatatctga
acagcataagctcaagtagaaggaatagaatgttcaaaggtcaggaggcc
caactgctcacgaagaaccagaggtgagaagtgaccaaggatgaacttta
aggaattgccttattatttcctgtcttcaaataacttcatgaatgaaaga
gcatgtacttcaaaccttggaaatgaatgagtgagccatttgcatttatt
tttaagccctcccttagacaattttctgttggatattgtgataatgaagg
tgttgctgctacctggactcattgagagttcataaaatccctgttccgct
atatgagaatagaagagcaagtcaaacccagtttatgacacctctgacat
ggaacacatgaccccagacagtgtcacacagggtctcattcttaaaggaa
gacacttgccatgttatccttgtcatcatactctctgttttaaaagactt
acaggtgatacaaaatctatagtgcagaagacagagattattgaaatatt
gtacatactcaatggataagaaaaggcagtaaccaagtgaccacagttct
gtgtggacctacattctagacaggctttatattgtttcctaacatgtcca
ttgcaagcagctttctctgtgggactttgttcttttgtgatgactgacag
gcatgtttggatgaaattagagggcagaaaccagtaagtcttccactttt
tatttaaaggcctccagcttaattttaatcatgaaggattcaggaacctc
ctgttcctcccagtgggaggggagagaaactcaattcccatctttcctga
acagtaatcaaaggtccctactgacactcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77355566_77356754
seq2: B6Ng01-110E04.b_48_1225

seq1  GAATTCTTAAATGTGTTTGGCTGCTTCATCCAATCCATTGTTTGTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGTGTTTGGCTGCTTCATCCAATCCATTGTTTGTCCTCT  50

seq1  GCACGCTCCCATATGAATGCGCAATTGTAAGAGAAACAGCACCCCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTCCCATATGAATGCGCAATTGTAAGAGAAACAGCACCCCTTCTT  100

seq1  GAGAGTTTACACTCTGATCTAATCAAGCATTGATAGGAAATGGTAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTACACTCTGATCTAATCAAGCATTGATAGGAAATGGTAAAATG  150

seq1  TGTGGAAGGTGTCACAGTGATACATAAGGACATTGGAAGGATAGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGTGTCACAGTGATACATAAGGACATTGGAAGGATAGAGAAAG  200

seq1  AAGGAAGTAGGAAATAAGAACTAGAGAAGAAAAAGCCCTAAGGGATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTAGGAAATAAGAACTAGAGAAGAAAAAGCCCTAAGGGATAAAG  250

seq1  TTAGGGATGGAGGAATATAAAGAAGGACAAATAATTGAGTGAAGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGGAGGAATATAAAGAAGGACAAATAATTGAGTGAAGGGAAAG  300

seq1  GAGGGAAGGAAAGGACAACAGAATGGGAAACTCACCAATAGGACACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGGAAAGGACAACAGAATGGGAAACTCACCAATAGGACACTTCT  350

seq1  TTACTTTTGATTTAATCTCAGGTATGAAAAGGATCATGAAGGTGAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTGATTTAATCTCAGGTATGAAAAGGATCATGAAGGTGAAGTGG  400

seq1  GAATCAACAAAAAACAGTGACTTAATATTTCCATCCATATAAATATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACAAAAAACAGTGACTTAATATTTCCATCCATATAAATATTTAC  450

seq1  CCAACCAGACGTCCATCAAATATTGAACTCATATTGTTGGCTAAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGACGTCCATCAAATATTGAACTCATATTGTTGGCTAAAAACCA  500

seq1  TGGCTTAGATCTGAGATTCAATTTGAACGTGGCACTCTTTGTGATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGATCTGAGATTCAATTTGAACGTGGCACTCTTTGTGATATATT  550

seq1  GTTTCATGTTGTTTCTCAAAAAAAAAAAATAAAAAATAAAAGAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTTGTTTCTCAAAAAAAAAAAATAAAAAATAAAAGAATAATAA  600

seq1  TAAAAAAAGAAAACAATCTAGAAGAAGCACCCAAGTGCAGAGAGCAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAAACAATCTAGAAGAAGCACCCAAGTGCAGAGAGCAAAAC  650

seq1  CACAGAGACAGCCAGACTCTTCACAGATGAAAGTCCTCCATTTTCGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACAGCCAGACTCTTCACAGATGAAAGTCCTCCATTTTCGCACA  700

seq1  TGAGATCTCTTTATCAGACAAGGGTTGTGGTGGCTTGAATGAAAACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCTTTATCAGACAAGGGTTGTGGTGGCTTGAATGAAAACCACC  750

seq1  AGAAGCTCTGTATTTGAACATTTGATTCAAAGTGGTGGCCCTCTTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGTATTTGAACATTTGATTCAAAGTGGTGGCCCTCTTTGAAA  800

seq1  AGGTTTAGAAGATTTGGATTTATTCAAGGAGATAAGTTACTGAACATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAAGATTTGGATTTATTCAAGGAGATAAGTTACTGAACATGGG  850

seq1  CGTTAAGAGTTTAGAACATCGTGCTACTTCCTGCTTGCCCTCACTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAGAGTTTAGAACATCGTGCTACTTCCTGCTTGCCCTCACTTTCTG  900

seq1  TTTCATGTTTGCTGTTGGAATGATTCCTATGCTATGCCTGTCTGCTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTGCTGTTGGAATGATTCCTATGCTATGCCTGTCTGCTACTG  950

seq1  TGACCTCCTGCCAGGATGGATTTATATTCCTCTGGTGCCGTAAGTAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGACCTCCTGCCAGGATGGATTTATATTCCTCTGGTGCCGTAAGT-AAAA  999

seq1  TAAAATTGTCC-TTTTATAGGTTGTCTTTGTCATAGTGTCTTTTCAGAGC  1049
      ||||| ||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TAAAA-TGTCCTTTTTATA-GTTGTCTTTGTCATAGTGTCTTTTCAGAGC  1047

seq1  AGCAACAGAAAGCATCTAATACAGGGGCTGATTATGCAGGTGATTTACTT  1099
      ||| ||||||||||||||||||| ||||||||||||||||||| |||| |
seq2  AGC-ACAGAAAGCATCTAATACA-GGGCTGATTATGCAGGTGA-TTAC-T  1093

seq1  AGAGTATTTAAAGGACACAGCTCCTTTCTA-TTTTTGTTGAGTTTATGCT  1148
      ||||||||| |||||| ||||||||||||| ||||||||||| |||||||
seq2  AGAGTATTT-AAGGACCCAGCTCCTTTCTATTTTTTGTTGAG-TTATGCT  1141

seq1  TTAAGAAAGCAATGCAGAAATGGGACATGGCTCAGTC-AGTA  1189
      || ||||||| ||||||||   | || | |||||||| ||||
seq2  TT-AGAAAGC-ATGCAGAA--TGTAC-TTGCTCAGTCTAGTA  1178

seq1: chr6_77490984_77492159
seq2: B6Ng01-110E04.g_65_1246 (reverse)

seq1  CCTGA--GTCAGTAGG--ACTTTGATTACTGGTCA-GAAAGATGGGATTT  45
      |||||  |||||||||   |||||||||||| ||| ||||||||||| ||
seq2  CCTGAGTGTCAGTAGGGACCTTTGATTACTGTTCAGGAAAGATGGGAATT  50

seq1  GAG-TTCTCT-CCCTCCCACTGGGA-GAACA-GAGGTTCCCTGAATCCCT  91
      ||| |||||| |||||||||||||| ||||| |||||| |||||||||  
seq2  GAGTTTCTCTCCCCTCCCACTGGGAGGAACAGGAGGTT-CCTGAATCC--  97

seq1  TCCATGATTATAATGTAGCTGGAGGCTTTTAAATAAAAAGT-GAAGACTT  140
      | |||||||| |||  |||||||||| |||||||||||||| ||||||||
seq2  TTCATGATTAAAATTAAGCTGGAGGCCTTTAAATAAAAAGTGGAAGACTT  147

seq1  ACCTGGTTCTGCCCTCTAAATGTCATCCAAACATGCCTGTCAGTCATCAC  190
      ||  | ||||||||||| ||| ||||||||||||||||||||||||||||
seq2  ACTGGTTTCTGCCCTCT-AATTTCATCCAAACATGCCTGTCAGTCATCAC  196

seq1  AAAAGAACAAAGTCCCACAGAGAAAGCTGCTTGCAATGGACATGTTAGGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAAAGTCCCACAGAGAAAGCTGCTTGCAATGGACATGTTAGGA  246

seq1  AACAATATAAAGCCTGTCTAGAATGTAGGTCCACACAGAACTGTGGTCAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATAAAGCCTGTCTAGAATGTAGGTCCACACAGAACTGTGGTCAC  296

seq1  TTGGTTACTGCCTTTTCTTATCCATTGAGTATGTACAATATTTCAATAAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTACTGCCTTTTCTTATCCATTGAGTATGTACAATATTTCAATAAT  346

seq1  CTCTGTCTTCTGCACTATAGATTTTGTATCACCTGTAAGTCTTTTAAAAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCTGCACTATAGATTTTGTATCACCTGTAAGTCTTTTAAAAC  396

seq1  AGAGAGTATGATGACAAGGATAACATGGCAAGTGTCTTCCTTTAAGAATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTATGATGACAAGGATAACATGGCAAGTGTCTTCCTTTAAGAATG  446

seq1  AGACCCTGTGTGACACTGTCTGGGGTCATGTGTTCCATGTCAGAGGTGTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGTGTGACACTGTCTGGGGTCATGTGTTCCATGTCAGAGGTGTC  496

seq1  ATAAACTGGGTTTGACTTGCTCTTCTATTCTCATATAGCGGAACAGGGAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGGGTTTGACTTGCTCTTCTATTCTCATATAGCGGAACAGGGAT  546

seq1  TTTATGAACTCTCAATGAGTCCAGGTAGCAGCAACACCTTCATTATCACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACTCTCAATGAGTCCAGGTAGCAGCAACACCTTCATTATCACA  596

seq1  ATATCCAACAGAAAATTGTCTAAGGGAGGGCTTAAAAATAAATGCAAATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACAGAAAATTGTCTAAGGGAGGGCTTAAAAATAAATGCAAATG  646

seq1  GCTCACTCATTCATTTCCAAGGTTTGAAGTACATGCTCTTTCATTCATGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCATTCATTTCCAAGGTTTGAAGTACATGCTCTTTCATTCATGA  696

seq1  AGTTATTTGAAGACAGGAAATAATAAGGCAATTCCTTAAAGTTCATCCTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGAAGACAGGAAATAATAAGGCAATTCCTTAAAGTTCATCCTT  746

seq1  GGTCACTTCTCACCTCTGGTTCTTCGTGAGCAGTTGGGCCTCCTGACCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTCTCACCTCTGGTTCTTCGTGAGCAGTTGGGCCTCCTGACCTT  796

seq1  TGAACATTCTATTCCTTCTACTTGAGCTTATGCTGTTCAGATATCTGCAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTCTATTCCTTCTACTTGAGCTTATGCTGTTCAGATATCTGCAT  846

seq1  GAATACTCACTCTGAGAACATCTTCTGATGATTATTAGCCTACATTCTCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTCACTCTGAGAACATCTTCTGATGATTATTAGCCTACATTCTCA  896

seq1  ACCTCAGTCTCCCCTCTTCATATAGTCAAGCTGGCTCCTTTGCATCTTAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTCTCCCCTCTTCATATAGTCAAGCTGGCTCCTTTGCATCTTAA  946

seq1  TTCCTTTATAAATCTTACCTTGTGCACAGAATTGGCTTATTCATTAAAAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATAAATCTTACCTTGTGCACAGAATTGGCTTATTCATTAAAAC  996

seq1  ATAAATTACCCAATGACAGGGATGTTCACCCCTTTTGTTTATTTTTATGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTACCCAATGACAGGGATGTTCACCCCTTTTGTTTATTTTTATGC  1046

seq1  AGAATAGTATCTGTCATATACTAGGATTTTAAGGAATATTTCCTCAAAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTATCTGTCATATACTAGGATTTTAAGGAATATTTCCTCAAAAA  1096

seq1  CATATAAGAATGCAAATCTAATAATATTAAACAGAAAAAAACAGGTAAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGAATGCAAATCTAATAATATTAAACAGAAAAAAACAGGTAAAT  1146

seq1  TCTTTACATTTTAAATTCTTCTTTGACTATGAATTC  1176
      ||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATTTTAAATTCTTCTTTGACTATGAATTC  1182