BAC Information

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BAC

Clone NameB6Ng01-111F22
Chromosome6 (Build37)
Map Location 43,511,015 - 43,701,781
singlet/doubletdoublet
Overlap geneTpk1
Upstream geneEapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F22.bB6Ng01-111F22.g
ACCDH917732DH917733
length1,1041,028
definitionDH917732|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F22, 5' end.DH917733|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,700,647 - 43,701,781)(43,511,015 - 43,512,052)
sequence
gaattctcaacagagactctaatggatgagaagcacttaaagaaatgttc
aatgtccatagtcaagacgaaaatagaccagcattctgagccttcccttt
tcgcagattccttctcatcagaaatccaagacctactgccactccttttc
aacaataaaagatgaaatgttaagtagccaaataaggctccaaagtagca
gtgttgatgacaatggctcaacccaacctgacatatttctcagaagcctt
gatgggctgtgttaatgctgctaactagcacctcatctgccttaaagaat
ctccatgctaaccacctagatgctgagcttctgagcatcacctctcttgt
caaatagcactgtaaaacataagaagcttctaatcgattcttggcctttt
ggctaagatcaagtgaagaaacttctatagctattgctgtcctgcactcc
ctgaggcaaccaaactgtttgttttattcaattgttcactcttcatagtg
gctgtgttcagtgcttccttgctatgcctacttacactagtatgatgccc
caaagagttcttcataaatgtctcgaaaaagaccctaaagaaaaggatac
tggtacaacatctgctaaaggtgtcaaaatcattattctaaggaaaactg
gtgagagacaagagactacagatggataatgaaatctggaaatataatca
agaaaatgattcatgaggatggagtgatgatgcatcagtcaagaggatat
atgctctccaagaagacccaagtttggtttccagcatcaatgttaggctg
ttcatgctgcctatagctctagcttcatgtcattcagttcttcctctggt
gtctgcaggtatttgtacttacatgcacataccacagaaacacacacaca
cacacacacactaaaaataaagataaatcttctttaaaaagaaaactgat
tcatgatatgaagagaaacatatgatgaagacttagagatcaaaatggga
ctaacagaaatttaaagccagaaaatacaacaaatacagttcacttattt
ttttatattaataggtattttctcaatacattcaatgctaacaagtccca
tacc
gaattccattaaaaacactaaactgaaagtcataatgtatatgtaaaaaa
ccttgtgcagaactgagaacagcgcctggttctctgagagttcatgtgag
attcgatcatgttgatttagagagccttggcctcgtttaattttttttta
aatccttgccctaggagttaagaataatcaatttttttatcctatggtgt
aggaatggttgcacgatattggtgatttaacaggatatcatggcaatttc
tttatctttaacagaccaatgtcttgtcttctgcccctatacaactatta
agatccaagctattaagtacattggttactttttcattgtagatttatac
aagtgtaatcggtagtaatgatgccacaaccccaaattcatgctatcttg
aaatttcctccaccaaataaattagttcattacttacatctcaagcaagt
ggaaaaatatagccagattggtttttttccaaaatatttcatgaatagcg
tgtatcccaaatgctaatagagtctttattcctatctgtgggtttccact
gtctgtattactctcaacagcactctcttccaggctccaaatagaacagc
ccaataagttccactcacagcattcaactgatttcctagtccaaaatttc
aacgtcttccacactaagtcatagcatgagcaaatgcctaagacagaaat
agcttcagaagaaaacaaactactctgttgacctaattcttcattttcaa
aactatcctatcaccatcgtgtgtgcagatttacctatatttaagtagat
tcgaacattcaactctaatttttgatatgctaacatcagaagaggagaat
gcaatggttagctatcaactctatggacagactgaaaagctcatcaaagt
ctatctattctgtgatcctgtcatatatgaaacaaaatcaggctaggggg
taaacactaagttttagcttggagcttctatactaagagtagggtcatca
acatagtatttagtataatctagtcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_43700647_43701781
seq2: B6Ng01-111F22.b_45_1148 (reverse)

seq1  GGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGGAAAATAC  50
      |||||  ||||||| |    ||||||||  ||||| | ||| ||||||||
seq2  GGTAT--GGGACTTGT----TAGCATTG--AATGT-ATTGA-GAAAATAC  40

seq1  CTATTAAAATATAAAAAAAATAAAGTTGTATACTGTATTTGTTGTATTTT  100
      ||||||| ||   ||||||||||    ||  |||||||||||||||||||
seq2  CTATTAATAT---AAAAAAATAA----GTGAACTGTATTTGTTGTATTTT  83

seq1  CTTGGCTTTTTAAATTTCTGTTTAGTCCCATTTATGATCTCTAAGTCTTC  150
      | ||||  |||||||||||| |||||||||||| ||||||||||||||||
seq2  C-TGGC--TTTAAATTTCTG-TTAGTCCCATTT-TGATCTCTAAGTCTTC  128

seq1  ATTCATATGTTTTCTCTTTCATATCATGAATCAGTTTTTCTTTTTTAAAG  200
      | ||||||| |||||| |||||||||||||||||||||   |||||||||
seq2  A-TCATATG-TTTCTC-TTCATATCATGAATCAGTTTT--CTTTTTAAAG  173

seq1  AAGATTTTATCTTTATTTTTTAGTGGTGTGTGTGTGTGTGTGTGTTTCTG  250
      |||| |||||||||| |||||||| |||||||||||||||||||||||||
seq2  AAGA-TTTATCTTTA-TTTTTAGT-GTGTGTGTGTGTGTGTGTGTTTCTG  220

seq1  TTGGTATGTGCATGTAAGTACAAATACCTGCAGACACCAGAGGAAGAACT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGGTATGTGCATGTAAGTACAAATACCTGCAGACACCAGAGGAAGAACT  269

seq1  GAATGACATGAAGCTAGAGCTATAGGCAGCATGAACAGCCTAACATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACATGAAGCTAGAGCTATAGGCAGCATGAACAGCCTAACATTGAT  319

seq1  GCTGGAAACCAAACTTGGGTCTTCTTGGAGAGCATATATCCTCTTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACCAAACTTGGGTCTTCTTGGAGAGCATATATCCTCTTGACTG  369

seq1  ATGCATCATCACTCCATCCTCATGAATCATTTTCTTGATTATATTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCATCACTCCATCCTCATGAATCATTTTCTTGATTATATTTCCAG  419

seq1  ATTTCATTATCCATCTGTAGTCTCTTGTCTCTCACCAGTTTTCCTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATCCATCTGTAGTCTCTTGTCTCTCACCAGTTTTCCTTAGAA  469

seq1  TAATGATTTTGACACCTTTAGCAGATGTTGTACCAGTATCCTTTTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTGACACCTTTAGCAGATGTTGTACCAGTATCCTTTTCTTTA  519

seq1  GGGTCTTTTTCGAGACATTTATGAAGAACTCTTTGGGGCATCATACTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTTTCGAGACATTTATGAAGAACTCTTTGGGGCATCATACTAGT  569

seq1  GTAAGTAGGCATAGCAAGGAAGCACTGAACACAGCCACTATGAAGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAGGCATAGCAAGGAAGCACTGAACACAGCCACTATGAAGAGTGA  619

seq1  ACAATTGAATAAAACAAACAGTTTGGTTGCCTCAGGGAGTGCAGGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAATAAAACAAACAGTTTGGTTGCCTCAGGGAGTGCAGGACAGC  669

seq1  AATAGCTATAGAAGTTTCTTCACTTGATCTTAGCCAAAAGGCCAAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTATAGAAGTTTCTTCACTTGATCTTAGCCAAAAGGCCAAGAATC  719

seq1  GATTAGAAGCTTCTTATGTTTTACAGTGCTATTTGACAAGAGAGGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGCTTCTTATGTTTTACAGTGCTATTTGACAAGAGAGGTGATG  769

seq1  CTCAGAAGCTCAGCATCTAGGTGGTTAGCATGGAGATTCTTTAAGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCTCAGCATCTAGGTGGTTAGCATGGAGATTCTTTAAGGCAGA  819

seq1  TGAGGTGCTAGTTAGCAGCATTAACACAGCCCATCAAGGCTTCTGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCTAGTTAGCAGCATTAACACAGCCCATCAAGGCTTCTGAGAAA  869

seq1  TATGTCAGGTTGGGTTGAGCCATTGTCATCAACACTGCTACTTTGGAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGGTTGGGTTGAGCCATTGTCATCAACACTGCTACTTTGGAGCC  919

seq1  TTATTTGGCTACTTAACATTTCATCTTTTATTGTTGAAAAGGAGTGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGCTACTTAACATTTCATCTTTTATTGTTGAAAAGGAGTGGCAG  969

seq1  TAGGTCTTGGATTTCTGATGAGAAGGAATCTGCGAAAAGGGAAGGCTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTGGATTTCTGATGAGAAGGAATCTGCGAAAAGGGAAGGCTCAG  1019

seq1  AATGCTGGTCTATTTTCGTCTTGACTATGGACATTGAACATTTCTTTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGTCTATTTTCGTCTTGACTATGGACATTGAACATTTCTTTAAG  1069

seq1  TGCTTCTCATCCATTAGAGTCTCTGTTGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCATCCATTAGAGTCTCTGTTGAGAATTC  1104

seq1: chr6_43511015_43512052
seq2: B6Ng01-111F22.g_65_1092

seq1  GAATTCCATTAAAAACACTAAACTGAAAGTCATAATGTATATGTAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAAAACACTAAACTGAAAGTCATAATGTATATGTAAAAAA  50

seq1  CCTTGTGCAGAACTGAGAACAGCGCCTGGTTCTCTGAGAGTTCATGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCAGAACTGAGAACAGCGCCTGGTTCTCTGAGAGTTCATGTGAG  100

seq1  ATTCGATCATGTTGATTTAGAGAGCCTTGGCCTCGTTTAATTTTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATCATGTTGATTTAGAGAGCCTTGGCCTCGTTTAATTTTTTTTTA  150

seq1  AATCCTTGCCCTAGGAGTTAAGAATAATCAATTTTTTTATCCTATGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGCCCTAGGAGTTAAGAATAATCAATTTTTTTATCCTATGGTGT  200

seq1  AGGAATGGTTGCACGATATTGGTGATTTAACAGGATATCATGGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGTTGCACGATATTGGTGATTTAACAGGATATCATGGCAATTTC  250

seq1  TTTATCTTTAACAGACCAATGTCTTGTCTTCTGCCCCTATACAACTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTAACAGACCAATGTCTTGTCTTCTGCCCCTATACAACTATTA  300

seq1  AGATCCAAGCTATTAAGTACATTGGTTACTTTTTCATTGTAGATTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGCTATTAAGTACATTGGTTACTTTTTCATTGTAGATTTATAC  350

seq1  AAGTGTAATCGGTAGTAATGATGCCACAACCCCAAATTCATGCTATCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATCGGTAGTAATGATGCCACAACCCCAAATTCATGCTATCTTG  400

seq1  AAATTTCCTCCACCAAATAAATTAGTTCATTACTTACATCTCAAGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTCCACCAAATAAATTAGTTCATTACTTACATCTCAAGCAAGT  450

seq1  GGAAAAATATAGCCAGATTGGTTTTTTTCCAAAATATTTCATGAATAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATATAGCCAGATTGGTTTTTTTCCAAAATATTTCATGAATAGCG  500

seq1  TGTATCCCAAATGCTAATAGAGTCTTTATTCCTATCTGTGGGTTTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCAAATGCTAATAGAGTCTTTATTCCTATCTGTGGGTTTCCACT  550

seq1  GTCTGTATTACTCTCAACAGCACTCTCTTCCAGGCTCCAAATAGAACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATTACTCTCAACAGCACTCTCTTCCAGGCTCCAAATAGAACAGC  600

seq1  CCAATAAGTTCCACTCACAGCATTCAACTGATTTCCTAGTCCAAAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGTTCCACTCACAGCATTCAACTGATTTCCTAGTCCAAAATTTC  650

seq1  AACGTCTTCCACACTAAGTCATAGCATGAGCAAATGCCTAAGACAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTTCCACACTAAGTCATAGCATGAGCAAATGCCTAAGACAGAAAT  700

seq1  AGCTTCAGAAG-AAACAAACTACTCTGTTGACCTAATTCTTCATTTTCAA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGAAGAAAACAAACTACTCTGTTGACCTAATTCTTCATTTTCAA  750

seq1  AACTATCCTATCACCATCGTGTGTGCAGATTTACCTATATTTAAGTAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACTATCCTATCACCATCGTGTGTGCAGATTTACCTATATTTAAGTAGA-  799

seq1  TTCGAACATTCAACTCTAATTTTTGATATGCTAACATCAGAAGA-GAGAA  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCGAACATTCAACTCTAATTTTTGATATGCTAACATCAGAAGAGGAGAA  849

seq1  TGCAATGGTTAGCTATCAAACTCTATGGACAGACTGAAAAGCTCATCAAA  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCAATGGTTAGCTATC-AACTCTATGGACAGACTGAAAAGCTCATCAAA  898

seq1  GTCTATCTATTCTGTGATCCCTGTCATATATGAAACAAAATCAGGCTAAG  948
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GTCTATCTATTCTGTGAT-CCTGTCATATATGAAACAAAATCAGGCT-AG  946

seq1  GGGGTAAAACACTAAGTTTTAGCTT-GAGCTTCTATACTACAGAGTAGGG  997
      ||||| ||||||||||||||||||| |||||||||||||| |||||||||
seq2  GGGGT-AAACACTAAGTTTTAGCTTGGAGCTTCTATACTA-AGAGTAGGG  994

seq1  TCATTAAACAATTAGTAATTTAGTAATTACATCTAGTCACA  1038
      ||| | ||||  |||| ||||||||  || |||||||||||
seq2  TCA-TCAACA--TAGT-ATTTAGTA--TA-ATCTAGTCACA  1028