BAC Information

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BAC

Clone NameB6Ng01-111I06
Chromosome6 (Build37)
Map Location 46,646,796 - 46,780,616
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I06.bB6Ng01-111I06.g
ACCDH917840DH917841
length1,0661,126
definitionDH917840|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I06, 5' end.DH917841|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,646,796 - 46,647,864)(46,779,472 - 46,780,616)
sequence
gaattcagtggccccatgtctatcattatgtttcacttggttctagggtg
ccattttgtttgtaggtaacatggctttgggtaaaagctttttagtgtct
gggaaagaaaggaattcagcttgaagtgcatcatggaattttaatcatag
aaggatagcaaggaaggggcaaacctcattagtggtccaataaggaaaca
tatgaggggtctcatgtaaatgggactcctcaaactctgcagtaaactga
acagcactgggaaaaggccacgttcaaaatgcaagccctgtgcatgcatg
catcctctcaaagttactcttccaaccagccaccattaatgccatcaatc
tgcctcattgtgacctacctttcctgacttactaataacttctgtaccca
catcttcatccccattgcctttcatgtaggttttagttacactgttgctt
tgggccttaacaggtttgattgtctttttaaattttttattgaaacataa
tgtttatgtaagactccaactgtaatcatgtggttaggcaagtcttgaca
agagcatacatctgtgtaccccagtcctctgccatgataatggaacactc
ctgtcaacctagaaaattctctaagaccctttcctatgctatgtctgcct
tgaaatcagagacaattactgatctgactagactaattttacccatttga
gaatttcataacagtacagaaaatatttctaaagattggctttccactct
atgaacatttctgaccattgttctttttcttatattcaacaagatgcata
gacctaaaaatttggatgttctgtttgatttttaaaactaaaattgctat
gaacagtttctcaaatcctttctgtggatcaacattttttctaaaatttc
acctaggagtggcattaccaggtcatgtggttaaattttaactaacctta
aattttgttgatgagtttcagttttatacactctagtggttgtgtaccag
tatttgttttattctgcattgcaggatgacttagtatggttgctttgttt
gtttgtttgtttgttt
gaattctttaattttggcaaccataaaatattaaacagtaagtaaaatct
ccgtaagagtcctatagtccatgagttggaagagagacgcttgattgtgc
ttcaggttgggaaggctcatcatccagcttcactgacagacaaggggcac
atgaccacagctgggctttcccaaagagcttctcagactaactgcaagat
ttcattagtgaatctacttaccaactgtgtcatggtttaggggtaatcag
aggagagatgggagcttttttgtatcttgttttgcatcctatttaaacat
tgcttaaatggaaacacatcttctgatgtattgtgcttatttcattgaga
gctattctttttgttccccatgccaaagaaataatccccttgagatattt
tccatgagtcctttggaaaacattattgtaaatatacccataaatattca
cttgtgtattttctgcttcttaaaacatgcgaagtaaccaaattctatgt
cataaaattcaaatttaataacgcatatttattgaacttacttgaatata
gttattgtttttatgatggctgaaagaactggtatatatatgagcaaacc
aaagagcaatgtacgctaagtgggctacaaatcctgaatagttttcaaga
tttgcaatgtgcaaaccacgattttcattttactatggaatactttctta
gaaaagaatatctcactataaatgggttctctgttaaatcatgctttaat
tacaaccacaattctcaaatttgagtatattccctgctccagagacatcc
tctgtgtctttctgtgtttacatgtgccccacggatgtccttcaacctgt
atctcaagatacatacactgtgggaaagttttttggtctttctgcatttt
attttgtgtcccaagggttgttttgtcctagaccagagaatcctgtctct
ctgtccagtgagtgctctttgactctgattctgtatctcatatactttct
tcttgttttttttggggggggggtcatacaaggtttctctgttagccctg
gctgtctaaaccactttgagacagctggctcaactcaaaattcgctggct
tcgcctctggatgctgggattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46646796_46647864
seq2: B6Ng01-111I06.b_44_1109

seq1  GAATTCAGTGGCCCCATGTCTATCATTATGTTTCACTTGGTTCTAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCCCCATGTCTATCATTATGTTTCACTTGGTTCTAGGGTG  50

seq1  CCATTTTGTTTGTAGGTAACATGGCTTTGGGTAAAAGCTTTTTAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTTTGTAGGTAACATGGCTTTGGGTAAAAGCTTTTTAGTGTCT  100

seq1  GGGAAAGAAAGGAATTCAGCTTGAAGTGCATCATGGAATTTTAATCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAAGGAATTCAGCTTGAAGTGCATCATGGAATTTTAATCATAG  150

seq1  AAGGATAGCAAGGAAGGGGCAAACCTCATTAGTGGTCCAATAAGGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGCAAGGAAGGGGCAAACCTCATTAGTGGTCCAATAAGGAAACA  200

seq1  TATGAGGGGTCTCATGTAAATGGGACTCCTCAAACTCTGCAGTAAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGGTCTCATGTAAATGGGACTCCTCAAACTCTGCAGTAAACTGA  250

seq1  ACAGCACTGGGAAAAGGCCACGTTCAAAATGCAAGCCCTGTGCATGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGGGAAAAGGCCACGTTCAAAATGCAAGCCCTGTGCATGCATG  300

seq1  CATCCTCTCAAAGTTACTCTTCCAACCAGCCACCATTAATGCCATCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTCAAAGTTACTCTTCCAACCAGCCACCATTAATGCCATCAATC  350

seq1  TGCCTCATTGTGACCTACCTTTCCTGACTTACTAATAACTTCTGTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTGTGACCTACCTTTCCTGACTTACTAATAACTTCTGTACCCA  400

seq1  CATCTTCATCCCCATTGCCTTTCATGTAGGTTTTAGTTACACTGTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATCCCCATTGCCTTTCATGTAGGTTTTAGTTACACTGTTGCTT  450

seq1  TGGGCCTTAACAGGTTTGATTGTCTTTTTAAATTTTTTATTGAAACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTAACAGGTTTGATTGTCTTTTTAAATTTTTTATTGAAACATAA  500

seq1  TGTTTATGTAAGACTCCAACTGTAATCATGTGGTTAGGCAAGTCTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTAAGACTCCAACTGTAATCATGTGGTTAGGCAAGTCTTGACA  550

seq1  AGAGCATACATCTGTGTACCCCAGTCCTCTGCCATGATAATGGAACACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATACATCTGTGTACCCCAGTCCTCTGCCATGATAATGGAACACTC  600

seq1  CTGTCAACCTAGAAAATTCTCTAAGACCCTTTCCTATGCTATGTCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACCTAGAAAATTCTCTAAGACCCTTTCCTATGCTATGTCTGCCT  650

seq1  TGAAATCAGAGACAATTACTGATCTGACTAGACTAATTTTACCCATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGAGACAATTACTGATCTGACTAGACTAATTTTACCCATTTGA  700

seq1  GAATTTCATAACAGTACAGAAAATATTTCTAAAGATTGGCTTTCCACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCATAACAGTACAGAAAATATTTCTAAAGATTGGCTTTCCACTCT  750

seq1  ATGAACATTTCTGACCATTGTTCTTTTTCTTATATTCAACAAGATGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTTCTGACCATTGTTCTTTTTCTTATATTCAACAAGATGCATA  800

seq1  GACCTAAAAATTTGGATGTTCTGTTTGATTTTTAAAACTAAAATTGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAAAATTTGGATGTTCTGTTTGATTTTTAAAACTAAAATTGCTAT  850

seq1  GAACAGTTTCTCAAATCCTTTCTGTGGATCAACATTTTTTCTAAAATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTTCTCAAATCCTTTCTGTGGATCAACATTTTTTCTAAAATTTC  900

seq1  ACCTAGGAGTGGCATTACCAGGTCATGTGGTTAAATTTTAACTAACCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAGTGGCATTACCAGGTCATGTGGTTAAATTTTAACTAACCTTA  950

seq1  AATTTTTGTTGATGAGTTTCAGTTTTATACACTCTAGTGGTTGTGTACCA  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTTGTTGATGAGTTTCAGTTTTATACACTCTAGTGGTTGTGTACCA  999

seq1  GTATTTGTTTTATTCTGCATTGCCAGGATGACTTTAGTATGGTT--TTTG  1048
      |||||||||||||||||||||| ||||||||| |||||||||||  ||||
seq2  GTATTTGTTTTATTCTGCATTG-CAGGATGAC-TTAGTATGGTTGCTTTG  1047

seq1  CTTTTGTTTTTGTTTTTGTTT  1069
        ||||||| | | |||||||
seq2  --TTTGTTTGTTTGTTTGTTT  1066

seq1: chr6_46779472_46780616
seq2: B6Ng01-111I06.g_69_1194 (reverse)

seq1  CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTTG  50
      ||||||||||||||| ||  ||||| || ||  ||| |||| |||| |||
seq2  CCTTTAATCCCAGCA-TCCAGAGGC-GAAGCCAGCGAATTT-TGAG-TTG  46

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAG  100
      | ||||||   |||| ||||||| ||| || |||||||||||||| ||||
seq2  A-GCCAGC--TGTCT-CAAAGTG-GTT-TA-GACAGCCAGGGCTA-ACAG  88

seq1  AGAAACCCTGTCTTGAACCCCCCCCCAAAAAAAAACAAAGAAAGAAAGTT  150
      ||||||| ||| |   |||||||||| |||||||||||   ||||||| |
seq2  AGAAACCTTGTAT--GACCCCCCCCCCAAAAAAAACAA--GAAGAAAG-T  133

seq1  ATATGAGGATACAGAATCAGAGGTCAAAGAGCCACTCACTGGACAGAGAG  200
      |||||| |||||||||||||| ||||||||| ||||||||||||||||||
seq2  ATATGA-GATACAGAATCAGA-GTCAAAGAG-CACTCACTGGACAGAGAG  180

seq1  ACAGGATTCTCTGGTTCTAGGACAAAACAACCC-TGGGACACAAAATGAA  249
      |||||||||||||| |||||||||||||||||| ||||||||||||| ||
seq2  ACAGGATTCTCTGG-TCTAGGACAAAACAACCCTTGGGACACAAAATAAA  229

seq1  ATGCAGAAAGACCAAAAAACTAT-CCACAGTGTATGTATCTTGAGATACA  298
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  ATGCAGAAAGACCAAAAAACTTTCCCACAGTGTATGTATCTTGAGATACA  279

seq1  GGTTGAAGGACATCCGTGGGGCACATGTAAACACAGAAAGACACAGAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGGACATCCGTGGGGCACATGTAAACACAGAAAGACACAGAGGA  329

seq1  TGTCTCTGGAGCAGGGAATATACTCAAATTTGAGAATTGTGGTTGTAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGGAGCAGGGAATATACTCAAATTTGAGAATTGTGGTTGTAATT  379

seq1  AAAGCATGATTTAACAGAGAACCCATTTATAGTGAGATATTCTTTTCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGATTTAACAGAGAACCCATTTATAGTGAGATATTCTTTTCTAA  429

seq1  GAAAGTATTCCATAGTAAAATGAAAATCGTGGTTTGCACATTGCAAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTCCATAGTAAAATGAAAATCGTGGTTTGCACATTGCAAATCT  479

seq1  TGAAAACTATTCAGGATTTGTAGCCCACTTAGCGTACATTGCTCTTTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTATTCAGGATTTGTAGCCCACTTAGCGTACATTGCTCTTTGGT  529

seq1  TTGCTCATATATATACCAGTTCTTTCAGCCATCATAAAAACAATAACTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATATATATACCAGTTCTTTCAGCCATCATAAAAACAATAACTAT  579

seq1  ATTCAAGTAAGTTCAATAAATATGCGTTATTAAATTTGAATTTTATGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTAAGTTCAATAAATATGCGTTATTAAATTTGAATTTTATGACA  629

seq1  TAGAATTTGGTTACTTCGCATGTTTTAAGAAGCAGAAAATACACAAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGGTTACTTCGCATGTTTTAAGAAGCAGAAAATACACAAGTGA  679

seq1  ATATTTATGGGTATATTTACAATAATGTTTTCCAAAGGACTCATGGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGGGTATATTTACAATAATGTTTTCCAAAGGACTCATGGAAAA  729

seq1  TATCTCAAGGGGATTATTTCTTTGGCATGGGGAACAAAAAGAATAGCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGGGGATTATTTCTTTGGCATGGGGAACAAAAAGAATAGCTCT  779

seq1  CAATGAAATAAGCACAATACATCAGAAGATGTGTTTCCATTTAAGCAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATAAGCACAATACATCAGAAGATGTGTTTCCATTTAAGCAATG  829

seq1  TTTAAATAGGATGCAAAACAAGATACAAAAAAGCTCCCATCTCTCCTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGGATGCAAAACAAGATACAAAAAAGCTCCCATCTCTCCTCTG  879

seq1  ATTACCCCTAAACCATGACACAGTTGGTAAGTAGATTCACTAATGAAATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCTAAACCATGACACAGTTGGTAAGTAGATTCACTAATGAAATC  929

seq1  TTGCAGTTAGTCTGAGAAGCTCTTTGGGAAAGCCCAGCTGTGGTCATGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTAGTCTGAGAAGCTCTTTGGGAAAGCCCAGCTGTGGTCATGTG  979

seq1  CCCCTTGTCTGTCAGTGAAGCTGGATGATGAGCCTTCCCAACCTGAAGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTCTGTCAGTGAAGCTGGATGATGAGCCTTCCCAACCTGAAGCA  1029

seq1  CAATCAAGCGTCTCTCTTCCAACTCATGGACTATAGGACTCTTACGGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGCGTCTCTCTTCCAACTCATGGACTATAGGACTCTTACGGAGA  1079

seq1  TTTTACTTACTGTTTAATATTTTATGGTTGCCAAAATTAAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTACTGTTTAATATTTTATGGTTGCCAAAATTAAAGAATTC  1126