BAC Information

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BAC

Clone NameB6Ng01-112B13
Chromosome6 (Build37)
Map Location 85,608,250 - 85,608,786
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112B13.bB6Ng01-112B13.g
ACCDH918256DH918257
length1,225939
definitionDH918256|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B13, 5' end.DH918257|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgacatagctaagccttcgtcagtgtttcaatgtcctagaaagt
ccttgagctgaccatgggcttggaattcagtaagattgttgcctattcag
tgacattcagaattgcctctggtattacactatcactttgaacaaaagct
aagtcactgccctacacaggaatttaccatcatctagggtgaaggaagtt
tgagacctaaggaggaaccagagtagatacttagaactatagatagctga
gttacacccatacacacatatttacaatggcctagggggcaggtggacta
tacaatagactaaaataggaactatggcaagggcacgaagcccttgaccc
tggcttctaagattaagtggaccttaggtggagctcctttagatcccagt
tgttaacaatgaattctatcccaagtggttcctgtcagaccttctgtgtt
tgtattcctctgttttgtgtaagaatccagtaacctctttgtaccttgct
gatgtgtcacccaacttccctattttcttctgtataaaaagtttgatgct
tgatttgacaaattacattcagattctacacaacctctcctgtgtgcatc
tgtctgtcatttcatccaacgctttgtccacctgcgactagagacacgtt
ccacaccaacaaaggggcccagagggtctgcagcaattgtcctaagtggt
atggtattattagcaagtagacagggatgctgtgacatgtttctctttcg
agtaaggtactgtaccagaaaataagtagggtaagacatgagcagccatg
ggactttgagaaccattgctagaaggaggcagtgcaattgagtagttcca
tgatgttgggcctgggtcttgagttggaaacatgcctacattgaacgatc
tcttgtgcccttgtttcagcatgttgtagtatgatagtatcatggacagg
agactacggaggtatgtacagaagactctcaactcatcatttgggcagaa
gtaatggattattaaccgatggtttttattgttggattttcttcttgctt
gaggtaatattttagtttgacatgagcctatattttgaagtggcccaaga
atttcttatgcacgcgccattttcattttttggtgtgtttataagaaaac
aaccctatgcaacttgtttgtcctatgtttcgaccagtttctcgaaatga
cacatgtctctctgtatcatgcact
gaattcctcttggaagattttacctttgatgagtgtgaagtgcccctcct
tgtcttttttgatgactttcggttggaagtcaattttattagatattaga
atggctactccagcttgtttcttcagaccatttgcttggaaaattgtttt
acaatctttcattctgaggtagtatctgtctttttttctgggatgggttt
cctgtaagcagcaaaattttgggtcctgtttgtgtagccagtctgttagt
ctatgcctttttattggggagttgagtccattgatattaagagatattaa
ggaaaagtaattgttgcttcctattaattttgttgttaaagttggtattc
tgtttttgtggctgtcctttttttaggtttgttgaaggattactttgttg
ctttttcaaggtcatggtttctgtccttgtattgtttttttgttgtttgt
ttgtttgtttgtttgttttttcctgttattatcctttgaaggcctggatt
catggaaagaaaatgtgtgaatttggtttttttgtggaatactttggttt
ctccctctatggtaattgcaagtttggctgggtatagtagcctgggctgg
catttgtgttttcttagtgtctgtataacatctgtccaggatcttctggc
tttcttagtctctggtgaatcatctgatgtaattctgataggcctgcctt
tatatgttacttgatctttttcagttattgcttttaatattctatcttta
tttagtgcatttgttgttcttattattacgtgttgggaggactttctttt
tctggtccagtctatttggagttctgtgggcttcttgtatgtcatgggca
tgtctttctttaggttggggaagttttcttctatacttttgttgagatta
ttttctggccctttagttgaaatcttcattctcatcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85608250_85608786
seq2: B6Ng01-112B13.g_441_1005 (reverse)

seq1  GTGGATGAGAATGAAGATTTTTAACTCAAAGTACCGGCAAATATCTTCAA  50
      || |||||||||||||| ||| |||| ||||  || | |||||   ||||
seq2  GTTGATGAGAATGAAGA-TTTCAACT-AAAGGGCCAGAAAATAATCTCAA  48

seq1  CAAAATTATAGAAGAAAACGTCCCAAATCTAAAGAAAGAGATGCCCATGA  100
      ||||| ||||||||||||| |||| || ||||||||||| ||||||||| 
seq2  CAAAAGTATAGAAGAAAACTTCCCCAACCTAAAGAAAGACATGCCCATG-  97

seq1  ACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAG-AAAAGAAA  149
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  ACATACAAGAAGCCCACAGAACTCCAAATAGACTGGACCAGAAAAAGAAA  147

seq1  TTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATA  199
       ||||||| |||| ||||||| ||||||||||||||||||||||||||||
seq2  GTCCTCCCAACACGTAATAATAAGAACAACAAATGCACTAAATAAAGATA  197

seq1  GAATACTAAAAGCAGTAAGGGAAAAAGGTCAAATAACATATAAAGGCAAG  249
      ||||| |||||||| |||  ||||||| |||| ||||||||||||||| |
seq2  GAATATTAAAAGCAATAACTGAAAAAGATCAAGTAACATATAAAGGCAGG  247

seq1  CCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAG  299
      ||||||||||||||| |||||  |||||||||||||| ||||||||||||
seq2  CCTATCAGAATTACATCAGATGATTCACCAGAGACTAAGAAAGCCAGAAG  297

seq1  AGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCA  349
      | ||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  ATCCTGGACAGATGTTATACAGACACTAAGAAAACACAAATGCCAGCCCA  347

seq1  GGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAA  399
      ||||||||||||||||||||||  ||||||||||||| ||||||||||||
seq2  GGCTACTATACCCAGCCAAACTTGCAATTACCATAGAGGGAGAAACCAAA  397

seq1  GTATTCCACGACAAAACCAAATTCATACATTATCTTTCCACGAATCCAGC  449
      ||||||||| | ||||||||||||| ||||| |||||||| |||||||| 
seq2  GTATTCCACAAAAAAACCAAATTCACACATTTTCTTTCCATGAATCCAGG  447

seq1  CCTTCAAAGGATAATAACAG------------------------------  469
      ||||||||||||||||||||                              
seq2  CCTTCAAAGGATAATAACAGGAAAAAACAAACAAACAAACAAACAAACAA  497

seq1  AAAAAAAACAATACCAGGACAGAAACCATACCCTAGAAAAAGCAAGAAGG  519
       ||||||||||||| ||||||||||||||  ||| |||||||||| || |
seq2  CAAAAAAACAATACAAGGACAGAAACCATGACCTTGAAAAAGCAACAAAG  547

seq1  TAATCCCTCAACAAACCT  537
      |||||| |||||||||||
seq2  TAATCCTTCAACAAACCT  565