BAC Information

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BAC

Clone NameB6Ng01-112D11
Chromosome6 (Build37)
Map Location 67,677,643 - 67,795,690
singlet/doubletdoublet
Overlap geneIgk, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129
Upstream geneV1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027
Downstream geneIgkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D11.bB6Ng01-112D11.g
ACCDH918338DH918339
length1,0431,201
definitionDH918338|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D11, 5' end.DH918339|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,794,640 - 67,795,690)(67,677,643 - 67,678,853)
sequence
gaattctgccttctttttccatatttgttggttattttatatatttacat
ttcaaatattatcctcccttctcagttttctatccacaagccccctatcc
cctcttccctcaccctgccacccacccactcctgcctaagcagcctagct
ttcccctatcctgtgcaatcaagcctccactggacaaagcatctcccctc
ccagtgatgccaggtaaggcaatactctgctacttatccacctgaagcca
taggtacccactgtgtactctttggttggtggtttagtccctgggagctt
tgatgggtctggatggagcagttgaggataagcagttcattgtactaagg
ctattgttctctgctcttatcctcagatgatagttttttgtctgtcccac
agaaaatggtgccctgacctctatgtcatccatagcctgtttctcctgct
gatactacttgtcagcatcccctcatttagccttcctactgtccaggaat
atatctgtggaggttgcttctggcttcttgatttgttttgtttcctgttt
ctagttctacattctagtctagtctctgacatacagagcgatagaatagg
cttctcctcaagagccaagcaagaattaccaaaacattaaatgtcatcaa
tggtggtcaagattgtaagtgctgtgagctttttgtgtgggtaggaataa
cagagtggtctggtttagcttgtggtactcccatcactgagtcccaccaa
gagcactcttgcttgagtcacaggattttttcctgatttctactctgtat
tctttcaacttcctcttgctaatctgctttcttagtttttaaggttgctt
ttatttagttttatggatgagtggtttaacttgtattatgggatgacatg
tgcatgcctgttgcccaggaaagtcaaaggagtcagtagttcctagaatg
aagtgtaaatgtaaaccaccagggatcatgctaaggactgaacccagttt
ctgaaagaccagcagtgctcctgccgtgacatctcactagccc
gaattcaaaggaagggttggggcagggtatcagagtgtccacagccttag
caggtttctctactctttctcaatctgtgcacgattcacattcctctgtg
ttctagagggcctgtggaattacagatagacatgatgctttgatgaatga
gaacacaatatagactgatgccctttatgaaaaagtgaaagagtgagaac
tttgcaacagctcccgtcagtgcctgtgaggaaaaattcaccagcaacaa
gacttctgggatatctataggaatgataggaacttacttctatactctga
catgtacagcagttgcttttgtgtgcaagttgttctcattcagtaaatct
atgtacagactcagagcactcatattcttcttgcaatgccatgagattta
agtaccgtagtatcttcatgatgtttcctttcactccagtgggttttctc
tatactccaactgaacagtattcattcctcaccctaactcttgtgtaagg
gcaagcattgcaggccctcctcatcagttattgttctggatgcctttgtg
actgtatcatgaatcaattaattgttctgtctttgtattaacctgagtaa
tatctgcctatccattattcatctaccttctctctaacatctatctatct
atctatctatctatctatctatctatctatctatctattatctatttatc
tatctatctgtctattgtctatttttctctttctcaatttcaccatctgt
ctctttttcaacaattacatatatgtatacaatttcattttcctttagta
agttatttctttaaataaaactgccatgtcatttattgaaaagaatttct
ctgcctctgtccttcctttccttctcaatgtatccctttttctatcttta
ttatccagccctccctatatcctatccatacagctctccctctctcttca
ctatcattgactttaaaagtagttatcctccacactaaagatttctggtg
aatggtgtttttgtggttcattattagtaggtatagtggtcaacattcag
atggttcattaatgcttttctattgatggagcacaggtcctcaaaactat
gacatgggggacatacactggaaacatggttaaccagtccttcctcacag
gtctccagcagggagagaaggctgttctcaggatccttccactccttagt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67794640_67795690
seq2: B6Ng01-112D11.b_46_1088 (reverse)

seq1  GGGCTAGTGAGATGATCACAGACAGGAGCACTGACTGGTCTTTCAGAAAA  50
      |||||||||||||| |||| | ||||||||||| ||||||||||||||| 
seq2  GGGCTAGTGAGATG-TCAC-GGCAGGAGCACTG-CTGGTCTTTCAGAAA-  46

seq1  CTTGGGTTCAGTTCTTAGCATG-TACCTGGTGGTTTACATTTACAACTTC  99
        |||||||||| ||||||||| | ||||||||||||||||||| |||||
seq2  -CTGGGTTCAGTCCTTAGCATGATCCCTGGTGGTTTACATTTAC-ACTTC  94

seq1  AATTCTAAGGAACCTACTGACTCCTTTGACTTTCCTGGGC-ACAGGCATG  148
       ||||| ||||| ||||||||||||||||||||||||||| |||||||||
seq2  -ATTCT-AGGAA-CTACTGACTCCTTTGACTTTCCTGGGCAACAGGCATG  141

seq1  CACATTGTCATCCATAAATACAAGTTAAACCACTCATCCATAAAACTAAA  198
      |||| ||||||||   ||||||||||||||||||||||||||||||||||
seq2  CACA-TGTCATCCCATAATACAAGTTAAACCACTCATCCATAAAACTAAA  190

seq1  TAAAAGCAACCTTAAAAACTAAGAAAGCAGATTAGCAAGAGGAAGTTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAACCTTAAAAACTAAGAAAGCAGATTAGCAAGAGGAAGTTGAA  240

seq1  AGAATACAGAGTAGAAATCAGGAAAAAATCCTGTGACTCAAGCAAGAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGAGTAGAAATCAGGAAAAAATCCTGTGACTCAAGCAAGAGTG  290

seq1  CTCTTGGTGGGACTCAGTGATGGGAGTACCACAAGCTAAACCAGACCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGGGACTCAGTGATGGGAGTACCACAAGCTAAACCAGACCACT  340

seq1  CTGTTATTCCTACCCACACAAAAAGCTCACAGCACTTACAATCTTGACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTCCTACCCACACAAAAAGCTCACAGCACTTACAATCTTGACCA  390

seq1  CCATTGATGACATTTAATGTTTTGGTAATTCTTGCTTGGCTCTTGAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATGACATTTAATGTTTTGGTAATTCTTGCTTGGCTCTTGAGGAG  440

seq1  AAGCCTATTCTATCGCTCTGTATGTCAGAGACTAGACTAGAATGTAGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTATTCTATCGCTCTGTATGTCAGAGACTAGACTAGAATGTAGAAC  490

seq1  TAGAAACAGGAAACAAAACAAATCAAGAAGCCAGAAGCAACCTCCACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAGGAAACAAAACAAATCAAGAAGCCAGAAGCAACCTCCACAGA  540

seq1  TATATTCCTGGACAGTAGGAAGGCTAAATGAGGGGATGCTGACAAGTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTGGACAGTAGGAAGGCTAAATGAGGGGATGCTGACAAGTAGT  590

seq1  ATCAGCAGGAGAAACAGGCTATGGATGACATAGAGGTCAGGGCACCATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGGAGAAACAGGCTATGGATGACATAGAGGTCAGGGCACCATTT  640

seq1  TCTGTGGGACAGACAAAAAACTATCATCTGAGGATAAGAGCAGAGAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGACAGACAAAAAACTATCATCTGAGGATAAGAGCAGAGAACAA  690

seq1  TAGCCTTAGTACAATGAACTGCTTATCCTCAACTGCTCCATCCAGACCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAGTACAATGAACTGCTTATCCTCAACTGCTCCATCCAGACCCA  740

seq1  TCAAAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACAGTGGGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACAGTGGGTAC  790

seq1  CTATGGCTTCAGGTGGATAAGTAGCAGAGTATTGCCTTACCTGGCATCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTTCAGGTGGATAAGTAGCAGAGTATTGCCTTACCTGGCATCAC  840

seq1  TGGGAGGGGAGATGCTTTGTCCAGTGGAGGCTTGATTGCACAGGATAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGGAGATGCTTTGTCCAGTGGAGGCTTGATTGCACAGGATAGGG  890

seq1  GAAAGCTAGGCTGCTTAGGCAGGAGTGGGTGGGTGGCAGGGTGAGGGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTAGGCTGCTTAGGCAGGAGTGGGTGGGTGGCAGGGTGAGGGAAG  940

seq1  AGGGGATAGGGGGCTTGTGGATAGAAAACTGAGAAGGGAGGATAATATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGGGGGCTTGTGGATAGAAAACTGAGAAGGGAGGATAATATTT  990

seq1  GAAATGTAAATATATAAAATAACCAACAAATATGGAAAAAGAAGGCAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAATATATAAAATAACCAACAAATATGGAAAAAGAAGGCAGAA  1040

seq1  TTC  1051
      |||
seq2  TTC  1043

seq1: chr6_67677643_67678853
seq2: B6Ng01-112D11.g_68_1268

seq1  GAATTCAAAGGAAGGGTTGGGGCAGGGTATCAGAGTGTCCACAGCCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAAGGGTTGGGGCAGGGTATCAGAGTGTCCACAGCCTTAG  50

seq1  CAGGTTTCTCTACTCTTTCTCAATCTGTGCACGATTCACATTCCTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTCTACTCTTTCTCAATCTGTGCACGATTCACATTCCTCTGTG  100

seq1  TTCTAGAGGGCCTGTGGAATTACAGATAGACATGATGCTTTGATGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGGGCCTGTGGAATTACAGATAGACATGATGCTTTGATGAATGA  150

seq1  GAACACAATATAGACTGATGCCCTTTATGAAAAAGTGAAAGAGTGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAATATAGACTGATGCCCTTTATGAAAAAGTGAAAGAGTGAGAAC  200

seq1  TTTGCAACAGCTCCCGTCAGTGCCTGTGAGGAAAAATTCACCAGCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACAGCTCCCGTCAGTGCCTGTGAGGAAAAATTCACCAGCAACAA  250

seq1  GACTTCTGGGATATCTATAGGAATGATAGGAACTTACTTCTATACTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGGATATCTATAGGAATGATAGGAACTTACTTCTATACTCTGA  300

seq1  CATGTACAGCAGTTGCTTTTGTGTGCAAGTTGTTCTCATTCAGTAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGCAGTTGCTTTTGTGTGCAAGTTGTTCTCATTCAGTAAATCT  350

seq1  ATGTACAGACTCAGAGCACTCATATTCTTCTTGCAATGCCATGAGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGACTCAGAGCACTCATATTCTTCTTGCAATGCCATGAGATTTA  400

seq1  AGTACCGTAGTATCTTCATGATGTTTCCTTTCACTCCAGTGGGTTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCGTAGTATCTTCATGATGTTTCCTTTCACTCCAGTGGGTTTTCTC  450

seq1  TATACTCCAACTGAACAGTATTCATTCCTCACCCTAACTCTTGTGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCAACTGAACAGTATTCATTCCTCACCCTAACTCTTGTGTAAGG  500

seq1  GCAAGCATTGCAGGCCCTCCTCATCAGTTATTGTTCTGGATGCCTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTGCAGGCCCTCCTCATCAGTTATTGTTCTGGATGCCTTTGTG  550

seq1  ACTGTATCATGAATCAATTAATTGTTCTGTCTTTGTATTAACCTGAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCATGAATCAATTAATTGTTCTGTCTTTGTATTAACCTGAGTAA  600

seq1  TATCTGCCTATCCATTATTCATCTACCTTCTCTCTAACATCTATCTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCTATCCATTATTCATCTACCTTCTCTCTAACATCTATCTATCT  650

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATTATCTATTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATTATCTATTTATC  700

seq1  TATCTATCTGTCTATTGTCTATTTTTCTCTTTCTCAATTTCACCATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTGTCTATTGTCTATTTTTCTCTTTCTCAATTTCACCATCTGT  750

seq1  CTCTTTTTCAACAATTACATATATGTATACAATTTCATTTTCCTTTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCAACAATTACATATATGTATACAATTTCATTTTCCTTTAGTA  800

seq1  AGTTATTTCTTTAAATAAAACTGCCATGTCATTTATTGAAAAGAATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTTTAAATAAAACTGCCATGTCATTTATTGAAAAGAATTTCT  850

seq1  CTGCCTCTGTCCTTCCTTTCCTTCTCAATGTATCCCTTTTTCTATCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGTCCTTCCTTTCCTTCTCAATGTATCCCTTTTTCTATCTTTA  900

seq1  TTATCCAGCCCTCCCTATATCCTATCCATACAGCTCTCCCTCTCTCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGCCCTCCCTATATCCTATCCATACAGCTCTCCCTCTCTCTTCA  950

seq1  CTATCATTGACTTTAAAAAGTAGTTATCCTCCACACTTAAAGATTTCTGG  1000
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CTATCATTGACTTT-AAAAGTAGTTATCCTCCACAC-TAAAGATTTCTGG  998

seq1  TGAAATGTGTTTTTGT-GTTCATTATTAGTAGTTAATAAGTGTCAAACAT  1049
      ||||  |||||||||| ||||||||||||||| ||   ||||   |||||
seq2  TGAATGGTGTTTTTGTGGTTCATTATTAGTAGGTA--TAGTGGTCAACAT  1046

seq1  TCAGATGTTCAATTAATGCTTTCTTAATTGAATGAGCAACAGGTCCTCAA  1099
      ||||||| |  ||||||||||| |  |||||  |||| ||||||||||||
seq2  TCAGATGGTTCATTAATGCTTT-TCTATTGATGGAGC-ACAGGTCCTCAA  1094

seq1  AAACATAATGAACATGGGGGACATACACTGAAAAACATTGTTACACAGTC  1149
      ||  ||     |||||||||||||||||||  |||||| ||||  |||||
seq2  AACTAT----GACATGGGGGACATACACTG-GAAACATGGTTAACCAGTC  1139

seq1  CTTCTCACACAAGTCT-CAGCA-GGAGAGA--GCTGTTCTTCCAGGAGTA  1195
      |||| | |||| |||| ||||| |||||||  ||||||||  ||||| | 
seq2  CTTC-CTCACAGGTCTCCAGCAGGGAGAGAAGGCTGTTCT--CAGGA-TC  1185

seq1  CTCTCACTCCTAAGTC  1211
      ||  ||||||| ||||
seq2  CTTCCACTCCTTAGTC  1201