BAC Information

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BAC

Clone NameB6Ng01-114E11
Chromosome6 (Build37)
Map Location 44,487,944 - 44,656,100
singlet/doubletdoublet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E11.bB6Ng01-114E11.g
ACCDH919838DH919839
length9441,152
definitionDH919838|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E11, 5' end.DH919839|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,655,174 - 44,656,100)(44,487,944 - 44,489,130)
sequence
gaattctaaagaaatattcttttgaggtgtaatataaaaaaaaaaaaaaa
aaaaaagaacttgtgagtggtataggaagcaaaattatcatagaatttta
aaaggaaaaagacttcaaagatatttcccttaggaagcgaatacccaata
cacttattaaatgacaagaacatgattaaaaatatgaaataatatctaca
ggagtattgctgcatgtaaaaggcaatcaacttcctgctgactccttgtc
cagactcactcggctctttaacatttccaccaaaaacttatgaagtagtt
agatacccttgccaacacatgagaaactatagactcttgagttcacaaaa
aaagcaccatgaggttgtgtagagaagcatattgaaggcaacctactaaa
ataatcatgtgtattattgggggggtcagccctctctaacagtcatccat
ggaaccactattcagaagtcttaccgataaagaatgcttggcatattcaa
cacgttcatggatctctaatagggctaagtggaggggggtagagaaaagg
ttcctaatttatatagcttcctgattgacaaaccttttagaatggcaata
gaggcttcatagtatctagaaggcactaactctcaagtatgatgggagaa
tcttaagaatgtttgtcatatgtctggtggatgcgcgaatttcatgtgtt
caccaaacctcatcaaatcacatataaaaataattagtgagattacagga
cttttttgtccaagaatcatctcagcaagtaaagaaacaataccagcatc
atagatcgccacctcatatgcatacacatacataactgtttattatcttg
ggtagaaacgtaggaaataatccatagtccagaaatacatatattacgaa
atgtttaaaagtcacttacctcaaattctgcccttaactgtttt
gaattctcctctttgtgattggtttccaatattgactggctttgccaatt
aggtgatacggctgacattttccaaattgaataacgtgaatctgtgggtc
cagatttgacaaacatatatacaaaagcatgtgaaagattagagcattta
agccaaaacatttattatcaaagacatgttgaaatgaacgatatttcaat
atctgcacatctccctggcttcacagatttaatcaggatgtgtcaaaatg
aatgattatcagtataattaagagacatttagccttattaaagttttcta
tttatgggtttctttgttgtgtttataattttgctgttatatatattctg
gaaataaagtgagtgattacttaaaattttaggatacttattcatttgtg
tataaagcaaacattcacaaattatgactaaaaaaataaagttataggta
tctttccatatataacttttgaaaactaacttttactttacactaaaatc
tgtaggttttaagttgaggaatggtctcaggctcctacttaataatatct
gaaagtacacaaagtatagtgcagctcatgttttgtactgttgctgattt
taaaattatcaacatattagataaatgttatataaaagagagactacatt
atttggtatcagcaaaattatggagtgaaagaatataagaaaattgttta
aatattctattttatgaatttaggaaataatattcaatagtgttgcttca
ttaacttattaattagtacagtggtagaatatatttgtagaacatacttg
taatatttgattgtagttggtggataactcatactttactcaatttttta
agattgtaattggatagcatattggacttctaattttcttaacaattgaa
attaattttcttaacattaactgttcttaacaataattctgtaatttcaa
tttttaaaagtttagccacagtatgattcaacagtgtggactatcacacc
ccagatgctctatactgtgaacatatgatgctatttggagtgattccacc
tagtagattagccatgagatttccctcaagatgggtagaaaacccccatt
atctgctcatggttattagataatcacatttgggctccataatgggcctc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44655174_44656100
seq2: B6Ng01-114E11.b_73_980 (reverse)

seq1  TTAAGGGGAATAAATTTGAGGTAAGTGAATTTATAAAACATTTTCCTAAT  50
      ||||||| |   |||||||||||||||| ||  | ||||| |||| ||||
seq2  TTAAGGGCA--GAATTTGAGGTAAGTGACTT--TTAAACA-TTTCGTAAT  45

seq1  ATTATTTATTTCTGTGACTAT-GAATATTTCCTACGTTTTCTACCCAAGA  99
      | ||| |||||||| |||||| || ||||||||||| |||||||||||||
seq2  A-TATGTATTTCTG-GACTATGGATTATTTCCTACG-TTTCTACCCAAGA  92

seq1  CTAATAAACAGTTATGTATGTGTATGCATATTTACTTTGGTGATCTATGA  149
       |||||||||||||||||||||||||||||  |    ||| |||||||||
seq2  -TAATAAACAGTTATGTATGTGTATGCATA--TGAGGTGGCGATCTATGA  139

seq1  TGCTTGCTATTGTTTTCTTCTACTTACTAATATGATTCTTTGAGAAAAAA  199
      ||| || ||||| |||||| ||||| || | |||||||||   || ||||
seq2  TGC-TGGTATTG-TTTCTT-TACTTGCTGAGATGATTCTT--GGACAAAA  184

seq1  AAGTACCTGTAATCTCACTAATTTTTTTTAATATGTGATTTGATGAGGTT  249
      |||| |||||||||||||||||| ||||| ||||||||||||||||||||
seq2  AAGT-CCTGTAATCTCACTAATTATTTTT-ATATGTGATTTGATGAGGTT  232

seq1  TGCTGAACACATGAAATTGTGCAAAACCACCAGAAATATGACAAACATTC  299
      || |||||||||||||||  ||  | |||||||| |||||||||||||||
seq2  TGGTGAACACATGAAATT-CGCGCATCCACCAGACATATGACAAACATTC  281

seq1  TTAAGATTCTCCCATCATACTTGAGAGTTAGTGCCTTCTAGATACTATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTCTCCCATCATACTTGAGAGTTAGTGCCTTCTAGATACTATGA  331

seq1  AGCCACTATTGCCATTCTAAAAGGTTTGTTTTTCAGGAAGCTATATAAAT  399
      |||| ||||||||||||||||||||||||   ||||||||||||||||||
seq2  AGCCTCTATTGCCATTCTAAAAGGTTTGTCAATCAGGAAGCTATATAAAT  381

seq1  TAGGAACCTTTTCTCTACCTCCTTCCACTTAGCACTATAAGAGATCCACG  449
      ||||||||||||||||||| || |||||||||| |||| ||||||||| |
seq2  TAGGAACCTTTTCTCTACCCCCCTCCACTTAGCCCTATTAGAGATCCATG  431

seq1  AATGTGTTGAATATGCCAAGAATTCATTATTGGTAAGACTTCTGAATAGT  499
      || ||||||||||||||||| |||| |||| |||||||||||||||||||
seq2  AACGTGTTGAATATGCCAAGCATTCTTTATCGGTAAGACTTCTGAATAGT  481

seq1  GGTTCCATGGATGACTGTTAGAGAGGGCTGACCCCCCCAATAATACACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATGGATGACTGTTAGAGAGGGCTGACCCCCCCAATAATACACAT  531

seq1  GATTATTTTAGTAGGTTGCCTTCAATATGCTTCTCTACACAACCACATGG  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATTATTTTAGTAGGTTGCCTTCAATATGCTTCTCTACACAACCTCATGG  581

seq1  TGCTTCTTTTGTGAACTCAAGAGTCTATAGTTTCTCATGTGTTGGCAAGG  649
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTGTGAACTCAAGAGTCTATAGTTTCTCATGTGTTGGCAAGG  631

seq1  GTATCTAACTACTTCATAAGTTTCTGGTGGAAATGTTAAAGAGCCGAGTG  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTATCTAACTACTTCATAAGTTTTTGGTGGAAATGTTAAAGAGCCGAGTG  681

seq1  AGTCTGGACATGGAGTCAGCAGGAAGTTGATTGCCTTTTACATGCAGCAA  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGACAAGGAGTCAGCAGGAAGTTGATTGCCTTTTACATGCAGCAA  731

seq1  TACTCCTGTAGATATTATTTCATATTTTTAATAATGTTCTTGTCATTTAA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTCCTGTAGATATTATTTCATATTTTTAATCATGTTCTTGTCATTTAA  781

seq1  TAAGTGTATTTGCTATTTGCTTACTTATAAAAATATCTTTGAAGTCTTTT  849
      |||||||||| | |||| |||| || |   ||||||||||||||||||||
seq2  TAAGTGTATTGGGTATTCGCTTCCTAAGGGAAATATCTTTGAAGTCTTTT  831

seq1  TCCTTTTAAAATTCTATGTTAATTTTGCTTCCTATACTACTCACAAGTTC  899
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TCCTTTTAAAATTCTATGATAATTTTGCTTCCTATACCACTCACAAGTTC  881

seq1  TTTTTTTTTTTTTTTTTTTTTTATATTA  927
       |||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTTTTTTTTTTATATTA  908

seq1: chr6_44487944_44489130
seq2: B6Ng01-114E11.g_68_1219

seq1  GAATTCTAATCTTTGTGATTAGTAGCAAATATTGACTGGCTTTGCCAATT  50
      |||||||  ||||||||||| ||  | |||||||||||||||||||||||
seq2  GAATTCTCCTCTTTGTGATTGGTTTCCAATATTGACTGGCTTTGCCAATT  50

seq1  AGGTGATACGGCTGACATTTTCCAAATTGAATAAGGTAAATCTGTGGGTC  100
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  AGGTGATACGGCTGACATTTTCCAAATTGAATAACGTGAATCTGTGGGTC  100

seq1  CAGATTTGACAAACATATATACCAAAGCATGTGAAAGATTAAAGCATTTA  150
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CAGATTTGACAAACATATATACAAAAGCATGTGAAAGATTAGAGCATTTA  150

seq1  AGCCAAAACATTTATTATCAAAGACATGTTGAAATGAACAATATTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCAAAACATTTATTATCAAAGACATGTTGAAATGAACGATATTTCAAT  200

seq1  ATCTGCACATCTCCCTGGCTTCACAGATTTAATCAGGATGTGTCAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACATCTCCCTGGCTTCACAGATTTAATCAGGATGTGTCAAAATG  250

seq1  AATGATTATCAGTATAATTAAGAGACATTTAGCCTTATTAAAGTTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATCAGTATAATTAAGAGACATTTAGCCTTATTAAAGTTTTCTA  300

seq1  TTTATGGGTTTCTTTGTTGTGTTTATAATTTTGCTGTTATATATATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGTTTCTTTGTTGTGTTTATAATTTTGCTGTTATATATATTCTG  350

seq1  GAAATAAAGTGAGTGATTACTTAAAATTTTAGGATACTTATTCATTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGTGAGTGATTACTTAAAATTTTAGGATACTTATTCATTTGTG  400

seq1  TATAAAGCAAACATTCACAAATTATGACTAAAAAAATAAAGTTATAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCAAACATTCACAAATTATGACTAAAAAAATAAAGTTATAGGTA  450

seq1  TCTTTCCATATATAACTTTTGAAAACTAACTTTTACTTTACACTAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATATATAACTTTTGAAAACTAACTTTTACTTTACACTAAAATC  500

seq1  TGTAGGTTTTAAGTTGAGGAATGGTCTCAGGCTCCTACTTAATAATATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTTAAGTTGAGGAATGGTCTCAGGCTCCTACTTAATAATATCT  550

seq1  GAAAGTACACAAAGTATAGTGCAGCTCATGTTTTGTACTGTTGCTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACACAAAGTATAGTGCAGCTCATGTTTTGTACTGTTGCTGATTT  600

seq1  TAAAATTATCAACATATTAGATAAATGTTATATAAAAGAGAGACTACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATCAACATATTAGATAAATGTTATATAAAAGAGAGACTACATT  650

seq1  ATTTGGTATCAGCAAAATTATGGAGTGAAAGAATATAAGAAAATTGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATCAGCAAAATTATGGAGTGAAAGAATATAAGAAAATTGTTTA  700

seq1  AATATTCTATTTTATGAATTTAGGAAATAATATTCAATAGTGTTGCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTATTTTATGAATTTAGGAAATAATATTCAATAGTGTTGCTTCA  750

seq1  TTAACTTATTAATTAGTACAGTGGTAGAATATATTTGTAGAACATACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTATTAATTAGTACAGTGGTAGAATATATTTGTAGAACATACTTG  800

seq1  TAATATTTTGATTGTAGTTGGTGGATAACTCATACTTTACTCAATTATTT  850
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TAATA-TTTGATTGTAGTTGGTGGATAACTCATACTTTACTCAATT-TTT  848

seq1  TAAGATTGTCAATGGATAGCATATTGGACTTCTAATTTTCTTAACAATTG  900
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTGTAATTGGATAGCATATTGGACTTCTAATTTTCTTAACAATTG  898

seq1  AAATTAATTTTCTTAACAATTAACTGTTTCTTAACAATTAATTCTGTAAA  950
      ||||||||||||||||| |||||||| |||||||||| ||||||||| ||
seq2  AAATTAATTTTCTTAAC-ATTAACTG-TTCTTAACAA-TAATTCTGT-AA  944

seq1  TTTCAATTTTTAAAAAGTTTAGCCAACAGTTATTGATTCAAACAGGTGT-  999
      ||||||||||| |||||||||||| |||||   |||||| |||| |||| 
seq2  TTTCAATTTTT-AAAAGTTTAGCC-ACAGT--ATGATTC-AACA-GTGTG  988

seq1  GACATACACACCCCAGATGCCTCTATACTGTGAAACATATGATGCATATT  1049
      |||   ||||||||||||| |||||||||||| |||||||||||| ||||
seq2  GACTATCACACCCCAGATG-CTCTATACTGTG-AACATATGATGC-TATT  1035

seq1  TAGAGTGGATTCAACTTAGTAAAATAAGCCCATGAAGATTTCCATCAAAA  1099
      | |||| ||||| || ||||| | ||   ||||| |||||||| ||||  
seq2  TGGAGT-GATTCCACCTAGTAGATTA--GCCATG-AGATTTCCCTCAA--  1079

seq1  GAATGTGTTAGAAATACCCCCACTTATTTCTGCTCAATTGTTATATTAGA  1149
        ||| | |||||| ||||||| |||  ||||||||  || | |||||| 
seq2  -GATG-GGTAGAAA-ACCCCCA-TTA--TCTGCTCA--TGGT-TATTAG-  1119

seq1  AAAATACACACATTTGGTCATCATAAATAGTGCCTCTT  1187
         |||  ||||||||| |  |||||   | |||||||
seq2  ---ATAATCACATTTGGGCTCCATAA--TGGGCCTCTT  1152