BAC Information

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BAC

Clone NameB6Ng01-114L04
Chromosome6 (Build37)
Map Location 135,174,089 - 135,309,448
singlet/doubletdoublet
Overlap gene8430419L09Rik, Gsg1, Pbp2, LOC100043890
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1
Downstream geneEmp1, Grin2b, EG668137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114L04.bB6Ng01-114L04.g
ACCDH920153DH920154
length1,120399
definitionDH920153|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L04, 5' end.DH920154|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,308,325 - 135,309,448)(135,174,089 - 135,174,493)
sequence
gaattctttcaagcaatttggaataatctactttgctctgctctgttgcc
atttccctcacttggaaagtggattgagcctgcctccacagatgccaaga
gccaggcccagtttcactggacctcagtaaagaccatcttcttaggaaga
gatgggctctcttgctcagtgaaacagagttatgttgccactggggcaca
ccccctctttctgcatcagtgagaatctcccactggcaccacaccctcta
gggcagattttcaagtctgtgcttgtgtgtccacttctgacgaatgtttg
aatcgggagcttctggtgtctgacgtaaagatcagttagttactccgggt
ctggaccaccaccaccaccaccaccaccacacacacacaagagcccatag
aaaagagagccatacatgacttgggtttgactgtgtgtatccacccaata
ggaatcttaatctcagccacacggcccccaaaggcaatatgtttattgtt
aatattagcaaatgctgtttaaacacaaaataggttgcaacaagtatatg
caattacacagttttccccaaagttgaaatgtttgctccttgctatgcct
ctttgaaatgtgaaaatttagcgacaattcccccttgctccctcttgctc
tctgcctttcacattttttttctgctgagctcttctttccttccccctca
ggagcatttcttcctactcttcctgtttgttctcttaggctccccctgta
aatgtaattttaatacagtctcataaaatgagaagtctccaagagtcccc
tcatctcaactctctctaataactttgtgctgaaaactattttggaaaaa
tatatggacgaaattcccaagggggttccaggtatgtgggcttgaggcct
ccagcttttgcagaggggaccggcttgaagcagctcactggtgaggaggg
tcttgctgtttcagaaccaggagcctgggtggacaagacatctgacttca
caggagaaagtccagctgatggcaccagacatctggcagatttgatatca
tccggagcgagagagtcttccggccacggggatgtttaagaacatagaac
tgcccagatgcctcaagaaa
tatgggatgctacgtggatgcatcagtgtgttagtcacagctgaggccaa
ataccgggcaaaatcaatggaggggaggaagctttcactgtgtcttacag
agtgtagagccaggtggggagggaaggcatagcagccccaggcgctgtca
cattgtatccacagtcaggaagcacactgtcacattgtatccacagtcag
gaagcacactgtcacattgtatccacagtcaggaagcacactgtcacatt
gtatccacagtcaggaagcggggagacagaaatgccggtgctcacttcta
tttctttcctattgaaatctcatttcatttctgtatgtgcatgtgtttgt
atatgtgtctgtatgagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135308325_135309448
seq2: B6Ng01-114L04.b_46_1165 (reverse)

seq1  TTTCTTTGAGGCATCTGGGCAG-TCTATGTTCTTTATACATCCCCGTTGC  49
      |||| ||||||||||||||||| ||||||||| ||| |||||||||| ||
seq2  TTTC-TTGAGGCATCTGGGCAGTTCTATGTTC-TTAAACATCCCCGTGGC  48

seq1  CCGAAGACTCTCTCGCTCCGGGATGATATCAAATCTGCCAGATGTCCTGT  99
      | ||||||||||||||||| ||||||||||||||||||||||||||  ||
seq2  CGGAAGACTCTCTCGCTCC-GGATGATATCAAATCTGCCAGATGTCTGGT  97

seq1  GCCATCAGCTTGGACTTTTCTCCTGTGAGGTCAGATGTCTTTGTCCACCC  149
      ||||||||| ||||| |||||||||||| |||||||||| ||||||||||
seq2  GCCATCAGC-TGGAC-TTTCTCCTGTGAAGTCAGATGTC-TTGTCCACCC  144

seq1  AGGCTCCTTGGTTCTGAAACAGCAAGACCCTCCTCACCAGTGAGCTGCTT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCC-TGGTTCTGAAACAGCAAGACCCTCCTCACCAGTGAGCTGCTT  193

seq1  CAAGCCGGTCCCCTCTGC-AAAGCTGGAGGCCTCAAGCCCACATACCTGG  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGCCGGTCCCCTCTGCAAAAGCTGGAGGCCTCAAGCCCACATACCTGG  243

seq1  AACCCCCTT-GGAATTTCGTCCATATTATTTTTCCAAAATAGTTTTCAGC  297
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  AACCCCCTTGGGAATTTCGTCCATA-TATTTTTCCAAAATAGTTTTCAGC  292

seq1  AC-AAGTTATTAGAGAGAGTTGAGATGAGGGGACTCTTGGAGACTTCTCA  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTATTAGAGAGAGTTGAGATGAGGGGACTCTTGGAGACTTCTCA  342

seq1  TTTTATGAGACTGTATTAAAATTACATTTACAGGGGGAGCCTAAGAGAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGACTGTATTAAAATTACATTTACAGGGGGAGCCTAAGAGAAC  392

seq1  AAACAGGAAGAGTAGGAAGAAATGCTCCTGAGGGGGAAGGAAAGAAGAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAGAGTAGGAAGAAATGCTCCTGAGGGGGAAGGAAAGAAGAGC  442

seq1  TCAGCAGAAAAAAAATGTGAAAGGCAGAGAGCAAGAGGGAGCAAGGGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAAAAAAAATGTGAAAGGCAGAGAGCAAGAGGGAGCAAGGGGGA  492

seq1  ATTGTCGCTAAATTTTCACATTTCAAAGAGGCATAGCAAGGAGCAAACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGCTAAATTTTCACATTTCAAAGAGGCATAGCAAGGAGCAAACAT  542

seq1  TTCAACTTTGGGGAAAACTGTGTAATTGCATATACTTGTTGCAACCTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTTGGGGAAAACTGTGTAATTGCATATACTTGTTGCAACCTATT  592

seq1  TTGTGTTTAAACAGCATTTGCTAATATTAACAATAAACATATTGCCTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAAACAGCATTTGCTAATATTAACAATAAACATATTGCCTTTG  642

seq1  GGGGCCGTGTGGCTGAGATTAAGATTCCTATTGGGTGGATACACACAGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGTGTGGCTGAGATTAAGATTCCTATTGGGTGGATACACACAGTC  692

seq1  AAACCCAAGTCATGTATGGCTCTCTTTTCTATGGGCTCTTGTGTGTGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGTCATGTATGGCTCTCTTTTCTATGGGCTCTTGTGTGTGTGT  742

seq1  GGTGGTGGTGGTGGTGGTGGTGGTCCAGACCCGGAGTAACTAACTGATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGGTGGTGGTGGTGGTCCAGACCCGGAGTAACTAACTGATCT  792

seq1  TTACGTCAGACACCAGAAGCTCCCGATTCAAACATTCGTCAGAAGTGGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTCAGACACCAGAAGCTCCCGATTCAAACATTCGTCAGAAGTGGAC  842

seq1  ACACAAGCACAGACTTGAAAATCTGCCCTAGAGGGTGTGGTGCCAGTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCACAGACTTGAAAATCTGCCCTAGAGGGTGTGGTGCCAGTGGG  892

seq1  AGATTCTCACTGATGCAGAAAGAGGGGGTGTGCCCCAGTGGCAACATAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCACTGATGCAGAAAGAGGGGGTGTGCCCCAGTGGCAACATAAC  942

seq1  TCTGTTTCACTGAGCAAGAGAGCCCATCTCTTCCTAAGAAGATGGTCTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCACTGAGCAAGAGAGCCCATCTCTTCCTAAGAAGATGGTCTTT  992

seq1  ACTGAGGTCCAGTGAAACTGGGCCTGGCTCTTGGCATCTGTGGAGGCAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTCCAGTGAAACTGGGCCTGGCTCTTGGCATCTGTGGAGGCAGG  1042

seq1  CTCAATCCACTTTCCAAGTGAGGGAAATGGCAACAGAGCAGAGCAAAGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCACTTTCCAAGTGAGGGAAATGGCAACAGAGCAGAGCAAAGTA  1092

seq1  GATTATTCCAAATTGCTTGAAAGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  GATTATTCCAAATTGCTTGAAAGAATTC  1120

seq1: chr6_135174089_135174493
seq2: B6Ng01-114L04.g_69_473

seq1  GAATTCTATGGGATGCTACGTGGATGCATCAGTGTGTTAGTCACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGATGCTACGTGGATGCATCAGTGTGTTAGTCACAGCTGA  50

seq1  GGCCAAATACCGGGCAAAATCAATGGAGGGGAGGAAGCTTTCACTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATACCGGGCAAAATCAATGGAGGGGAGGAAGCTTTCACTGTGTC  100

seq1  TTACAGAGTGTAGAGCCAGGTGGGGAGGGAAGGCATAGCAGCCCCAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGTGTAGAGCCAGGTGGGGAGGGAAGGCATAGCAGCCCCAGGCG  150

seq1  CTGTCACATTGTATCCACAGTCAGGAAGCACACTGTCACATTGTATCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATTGTATCCACAGTCAGGAAGCACACTGTCACATTGTATCCAC  200

seq1  AGTCAGGAAGCACACTGTCACATTGTATCCACAGTCAGGAAGCACACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAAGCACACTGTCACATTGTATCCACAGTCAGGAAGCACACTGT  250

seq1  CACATTGTATCCACAGTCAGGAAGCGGGGAGACAGAAATGCCGGTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTATCCACAGTCAGGAAGCGGGGAGACAGAAATGCCGGTGCTCA  300

seq1  CTTCTATTTCTTTCCTATTGAAATCTCATTTCATTTCTGTATGTGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTCTTTCCTATTGAAATCTCATTTCATTTCTGTATGTGCATGT  350

seq1  GTTTGTATATGTGTCTGTATGAGTCTGTGTGTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATATGTGTCTGTATGAGTCTGTGTGTGTGTGTGTGTGTGTGTGT  400

seq1  GTGTG  405
      |||||
seq2  GTGTG  405