BAC Information

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BAC

Clone NameB6Ng01-115F23
Chromosome6 (Build37)
Map Location 54,420,484 - 54,517,199
singlet/doubletdoublet
Overlap geneWipf3, Scrn1
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F23.bB6Ng01-115F23.g
ACCDH920655DH920656
length1,168760
definitionDH920655|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F23, 5' end.DH920656|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,516,043 - 54,517,199)(54,420,484 - 54,421,240)
sequence
gaattccaaaagtccaaaagtggaatcaggtgaaaggctacatatgttct
tatcttgagagatattgtcatacacacacacacacacacacacacacaca
cacacacacacacaaacacacacaccatagagactataaaactttgattt
gtgttcatctgataactggaaaatacatgtgaatctgctgctgcccgctg
ctgctactctcttcccagtggactcttacagccttttcttatcgaggtag
atcgggtctcagcccctgaggcgttgttatcaaaagccttgaggtgggca
tcacctctttccctgtcaaaagtttattaaccctggtgtggaatcttgcc
tttgttacttgctgcatgaccttggtccacagagtgtgaatatgctgcat
cgtctggtttatgagcacgatcacaatcggttaacattagggaaggactt
tgacacattgaatcaaccaaatgaagaatgcatatctctgcagggaattc
tcgccaggcaccaaggctcagactagcaaccacacagtaaaatgttgcca
ggagaaagcaggacctggctccttaaagctctggttcctcccttcgagag
agtttcaaccaagaaataaaaatctagaaagaaaggaaccactttctgtt
gagtcccgccccctctgctgttcttgggggctcctggtgccctcccctcc
caggcggggcgggctctgaggcctcagctgtcaaacacaacgagtcctgg
ggcccagagcaccgggaggcgggagggtgggtctgcggtcgcgtgaccaa
accagctgttagccggggggctggagagcctggagtctgggaaaccggag
cgccggcggtcttctgcgctacggatgcagaggctgtaacctagccgccg
cagcgccccaactccgcagtcgcagcatcagcaccgttggacccggctgg
agccggctgcttggcaggtgagcctcaggctacgcggggggagcgccggg
gcgctggcagctgctcttccgctggggaggtcaccacatttcccattaca
attctaacggcctcgcggggtgtggaccaagggaaggggaagatcggaag
gttaggtgggctcggtctgggccgacttggagaatcagggaactccggac
gagctactggcagcctgg
gaattccatgttttgtagaccccataccctgtgcacagttattggatttt
gtgtggttcttttatacttggaagtattttaaagggttgttaaatatttg
gttttgagttgattatcccccgtttaaggagtcgagcttggtttccggcg
tgctgacctgtaaaccatgacctccatgactccctttctggctctaggtg
ctttctgctagactgtttgcagcctgtgaacaggtagttttatctttcct
tcctactgcacacctcactgctctcccatgattgccattatgatgttgaa
tagatgagagggcagagcctagctttgatcctgacagcaggaagctactt
cacccctgggtttattgttggcaagtgagaatgaagcgccttcccattct
gtctgaagagagctcctatcatgaaaggaagctggattttgttgtttggc
tgccttttcttaatcaattgatgtaatcatgtgatttttttcttcatttt
tacattgtgttaatatgagtttgtttgaatgattggcaatgcacacacag
tgtgtatatgtatgcacacagatagatgggtagatagacagagaaaaaac
aaataaagaaaggatatgactgttcttaggtatggtggaggaggtttatt
gtagataaaggggagagcactagccagaggcagggacatctgggagagtt
cagagtgaagatgacccccaaagctggagctttgtgaggagaaaaggggg
agggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54516043_54517199
seq2: B6Ng01-115F23.b_48_1215 (reverse)

seq1  CCAGGCTG-CAGTAGCTTCGTCCCGAAGTCCCTGA-TCT-CAAGTCGGGC  47
      |||||||| ||||||| |||||| ||  ||||||| ||| |||||||| |
seq2  CCAGGCTGCCAGTAGC-TCGTCCGGAGTTCCCTGATTCTCCAAGTCGGCC  49

seq1  CAGACCGAGGCCACCTAACC-TCCGATC-TCCCCTTCCC-TGGTCCACA-  93
      ||||||||| |||||||||| ||||||| |||||||||| ||||||||| 
seq2  CAGACCGAGCCCACCTAACCTTCCGATCTTCCCCTTCCCTTGGTCCACAC  99

seq1  CTCGCGAGG-CGTTAGAATTGTAATGGGAAATGTGGTGACCT-CCCAGCG  141
      | ||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  CCCGCGAGGCCGTTAGAATTGTAATGGGAAATGTGGTGACCTCCCCAGCG  149

seq1  GAAGAGCAGCTGCCAGCGCCCCGGCGCT--CCCCGCGTAGCCTGAGGCTC  189
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAAGAGCAGCTGCCAGCGCCCCGGCGCTCCCCCCGCGTAGCCTGAGGCTC  199

seq1  ACCTGCCAAGCAGCCGGCTCCAGCCGGGTCCAACGGTGCTGATGCTGCGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAAGCAGCCGGCTCCAGCCGGGTCCAACGGTGCTGATGCTGCGA  249

seq1  CTGCGGAGTTGGGGGCGCTGCGGCGGCTAGGTTACAGCCTCTGCATCCGT  289
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGAGTT-GGGGCGCTGCGGCGGCTAGGTTACAGCCTCTGCATCCGT  298

seq1  AGCGCAGAAGACCGCCGGCGCTCCGGTTTCCCAGACTCCAGGCTCTCCAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGAAGACCGCCGGCGCTCCGGTTTCCCAGACTCCAGGCTCTCCAG  348

seq1  -CCCCCGGCTAACAGCTGGTTTGGTCACGCGACCGCAGACCCACCCT-CC  387
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCCCCGGCTAACAGCTGGTTTGGTCACGCGACCGCAGACCCACCCTCCC  398

seq1  GCCTCCCGGTGCTCTGGGCCCCAGGACTCGTTGTGTTTGACAGCTGAGGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGGTGCTCTGGGCCCCAGGACTCGTTGTGTTTGACAGCTGAGGC  448

seq1  CTCAGAGCCCGCCCCGCCTGGGAGGGGAGGGCACCAGGAGCCCCCAAGAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCCCGCCCCGCCTGGGAGGGGAGGGCACCAGGAGCCCCCAAGAA  498

seq1  CAGCAGAGGGGGCGGGACTCAACAGAAAGTGGTTCCTTTCTTTCTAGATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGGGGCGGGACTCAACAGAAAGTGGTTCCTTTCTTTCTAGATT  548

seq1  TTTATTTCTTGGTTGAAACTCTCTCGAAGGGAGGAACCAGAGCTTTAAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTGGTTGAAACTCTCTCGAAGGGAGGAACCAGAGCTTTAAGG  598

seq1  AGCCAGGTCCTGCTTTCTCCTGGCAACATTTTACTGTGTGGTTGCTAGTC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTCCTGCTTTCTCCTGGCAACATTTTACTGTGTGGTTGCTAGTC  648

seq1  TGAGCCTTGGTGCCTGGCGAGAATTCCCTGCAGAGATATGCATTCTTCAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGGTGCCTGGCGAGAATTCCCTGCAGAGATATGCATTCTTCAT  698

seq1  TTGGTTGATTCAATGTGTCAAAGTCCTTCCCTAATGTTAACCGATTGTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGATTCAATGTGTCAAAGTCCTTCCCTAATGTTAACCGATTGTGA  748

seq1  TCGTGCTCATAAACCAGACGATGCAGCATATTCACACTCTGTGGACCAAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTCATAAACCAGACGATGCAGCATATTCACACTCTGTGGACCAAG  798

seq1  GTCATGCAGCAAGTAACAAAGGCAAGATTCCACACCAGGGTTAATAAACT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCAGCAAGTAACAAAGGCAAGATTCCACACCAGGGTTAATAAACT  848

seq1  TTTGACAGGGAAAGAGGTGATGCCCACCTCAAGGCTTTTGATAACAACGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGGGAAAGAGGTGATGCCCACCTCAAGGCTTTTGATAACAACGC  898

seq1  CTCAGGGGCTGAGACCCGATCTACCTCGATAAGAAAAGGCTGTAAGAGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCTGAGACCCGATCTACCTCGATAAGAAAAGGCTGTAAGAGTC  948

seq1  CACTGGGAAGAGAGTAGCAGCAGCGGGCAGCAGCAGATTCACATGTATTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAGAGAGTAGCAGCAGCGGGCAGCAGCAGATTCACATGTATTT  998

seq1  TCCAGTTATCAGATGAACACAAATCAAAGTTTTATAGTCTCTATGGTGTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATCAGATGAACACAAATCAAAGTTTTATAGTCTCTATGGTGTG  1048

seq1  TGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  1098

seq1  TGACAATATCTCTCAAGATAAGAACATATGTAGCCTTTCACCTGATTCCA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATATCTCTCAAGATAAGAACATATGTAGCCTTTCACCTGATTCCA  1148

seq1  CTTTTGGACTTTTGGAATTC  1157
      ||||||||||||||||||||
seq2  CTTTTGGACTTTTGGAATTC  1168

seq1: chr6_54420484_54421240
seq2: B6Ng01-115F23.g_65_824

seq1  GAATTCCATGTTTTGTAGACCCCATACCCTGTGCACAGTTATTGGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTTGTAGACCCCATACCCTGTGCACAGTTATTGGATTTT  50

seq1  GTGTGGTTCTTTTATACTTGGAAGTATTTTAAAGGGTTGTTAAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCTTTTATACTTGGAAGTATTTTAAAGGGTTGTTAAATATTTG  100

seq1  GTTTTGAGTTGATTATCCCCCGTTTAAGGAGTCGAGCTTGGTTTCCGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTTGATTATCCCCCGTTTAAGGAGTCGAGCTTGGTTTCCGGCG  150

seq1  TGCTGACCTGTAAACCATGACCTCCATGACTCCCTTTCTGGCTCTAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCTGTAAACCATGACCTCCATGACTCCCTTTCTGGCTCTAGGTG  200

seq1  CTTTCTGCTAGACTGTTTGCAGCCTGTGAACAGGTAGTTTTATCTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTAGACTGTTTGCAGCCTGTGAACAGGTAGTTTTATCTTTCCT  250

seq1  TCCTACTGCACACCTCACTGCTCTCCCATGATTGCCATTATGATGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCACACCTCACTGCTCTCCCATGATTGCCATTATGATGTTGAA  300

seq1  TAGATGAGAGGGCAGAGCCTAGCTTTGATCCTGACAGCAGGAAGCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGAGGGCAGAGCCTAGCTTTGATCCTGACAGCAGGAAGCTACTT  350

seq1  CACCCCTGGGTTTATTGTTGGCAAGTGAGAATGAAGCGCCTTCCCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTGGGTTTATTGTTGGCAAGTGAGAATGAAGCGCCTTCCCATTCT  400

seq1  GTCTGAAGAGAGCTCCTATCATGAAAGGAAGCTGGATTTTGTTGTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAGAGCTCCTATCATGAAAGGAAGCTGGATTTTGTTGTTTGGC  450

seq1  TGCCTTTTCTTAATCAATTGATGTAATCATGTGATTTTTTTCTTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCTTAATCAATTGATGTAATCATGTGATTTTTTTCTTCATTTT  500

seq1  TACATTGTGTTAATATGAGTTTGTTTGAATGATTGGCAATGCACACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGTTAATATGAGTTTGTTTGAATGATTGGCAATGCACACACAG  550

seq1  TGTGTATATGTATGCACACAGATAGATGGGTAGATAGACAGAGAAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGTATGCACACAGATAGATGGGTAGATAGACAGAGAAAAAAC  600

seq1  AAATAAAGAAAGGATATGACTGTTCTTAGGTATGGTGGAGGAGGTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAAGGATATGACTGTTCTTAGGTATGGTGGAGGAGGTTTATT  650

seq1  GTAGATAAAGGGGAGAGCACTAGCCAGAGGCAGGGACATCTGGGAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAGGGGAGAGCACTAGCCAGAGGCAGGGACATCTGGGAGAGTT  700

seq1  CAGAGTGAAGATGACCCCC-AAGCTGGAGC-TTGTGAGGAG-AAAGGGGG  747
      ||||||||||||||||||| |||||||||| |||||||||| ||||||||
seq2  CAGAGTGAAGATGACCCCCAAAGCTGGAGCTTTGTGAGGAGAAAAGGGGG  750

seq1  AGGGGGAGGG  757
      ||||||||||
seq2  AGGGGGAGGG  760