BAC Information

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BAC

Clone NameB6Ng01-116B14
Chromosome6 (Build37)
Map Location 36,431,261 - 36,432,410
singlet/doubletsinglet
Overlap genenone
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116B14.bB6Ng01-116B14.g
ACCDH921185DH921186
length1,2371,132
definitionDH921185|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B14, 5' end.DH921186|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctagagcaaacca
gtagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaa
atcagggactagaaaaggctgcccactttctccctacctattcaacatag
tatttgaagtcctagacagagcaattcaacaacaaaaggagatcaagtag
atacaaattggaaaggaagaagtaaaaaatatcactttttgcagatgata
tgatagtatataaaagtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcagtgaagtatctggatataaaattaactcaaacaa
atcaatggcctttctctacacaaaggatcaacaggctgagaatgagaaag
aaattagggaaacaacactgtcacaatagtcacaaaaaacataaaatacc
ttggcgtgactctaactaagaaagtgaaagatctgtatgataagaacttc
aagtctctgaagaaagaaattaaagaagatctcagaagatggaaagatct
cccatactcatggattggcaggatcaatatagtaaaaatggctatcttgc
caaaagcaatctacagatttaatgcaatccccatcaaaattccaactcag
ttcttcaacgaattagaaagggcattcggcagattcatctggaataacaa
aaaacctaggacagcaaaaactcttctcaaggataaaagaacctctggtg
gaatcaccatgcctgacctaaatctgtactacagatcagttgtgataaaa
actgcatggtactggtacaacgacagacaaggagaccaatcaatagaatt
aaagacccagaaatgaacccatagacctatggtcacttgatctttgacaa
gggagctaaaatcatccagtggaaaaagacagcattttcacaaatggtgc
tggcacaactggcggttatcatatagaagaatgcgaatcgactcattcct
atctcttgtactaagtcaatctaagtggatcaggactgcacataaatcag
agaaagtgaacttatagaggagaaagtgggaaagtctcgagattggcaag
ggaaaaatctggaatagaacagcatgcttgtgctataagatcgaatgaca
aatggaacctcatgaaatgcaagctctgcagcagatctgtcaatagacaa
agtcatcacgattggaaggtctttccattcttaactc
gaattcctaagaataaattatttaaaaccccatcctgctctatataaatg
catctcctatactgttgagcctagtgagcctggatttgtttcctgggacc
tctgtctgagcgaactatggagggtaggaaaggttcaggtgaggttctgt
cctgatctaacaagctgacccacaagacataaactaatggcctttggaga
ttcatcactcaggtgccagaccttatctgataacaatgtgggggacttta
caatttgacaacaaagtcaacagagtcagaaacgtgagtgagatcctagt
ggagtcaaaataaaacaaacaagcaaacaatcaaacatccttaatataaa
gaagcaaaaaaacaatgattaatttcaaaactatgcaaaatattgattac
caggtaaataaaaatgaacctggcttaactagtcacatagttatttataa
agccactggcagatgtagccttcaggacatacatgagaccttccaacctg
aagatctggacttggcttacctatggaggcgatccatgttttctgtttac
ctctcttccttgagtgggtctttggtccatcctgtctgctggacttccta
tgtattcacagcttatttgtttctttgcctcttatctctgcttcccactg
agcactactcttcctggggactgagattaagttgactgatgatttcctgc
agcgctccctctttcccagcatgatctcatgcacatccatcagcggagga
atgtgagctagagaggtggcctagcaggtaagaggagcctctgctcttcc
atggaaccaggtttgactcccagcttctaactccagctctagggcatctg
acaccttcttctgctctctgtgggcactgtgctcacttgtactcgagtgc
acatgtttgcacacacacaaccatacacatacattcaaacttatatactc
tcacacataaaactacaatgaaaacagatttctgtatactttgtttgttc
attttcaacaccacaccacacacaccacacacacccacacacaccacacc
acttcctaagaacttacaaggagaggcctggtccatacgttattgtcttt
atattagttgatctaagcctgtggttcagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36431261_36432410
seq2: B6Ng01-116B14.g_68_1199

seq1  GAATTCCTAAGAATAAATTATTTAAAACCCCATCCTGCTCTATATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGAATAAATTATTTAAAACCCCATCCTGCTCTATATAAATG  50

seq1  CATCTCCTATACTGTTGAGCCTAGTGAGCCTGGATTTGTTTCCTGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTATACTGTTGAGCCTAGTGAGCCTGGATTTGTTTCCTGGGACC  100

seq1  TCTGTCTGAGCGAACTATGGAGGGTAGGAAAGGTTCAGGTGAGGTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGAGCGAACTATGGAGGGTAGGAAAGGTTCAGGTGAGGTTCTGT  150

seq1  CCTGATCTAACAAGCTGACCCACAAGACATAAACTAATGGCCTTTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTAACAAGCTGACCCACAAGACATAAACTAATGGCCTTTGGAGA  200

seq1  TTCATCACTCAGGTGCCAGACCTTATCTGATAACAATGTGGGGGACTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTCAGGTGCCAGACCTTATCTGATAACAATGTGGGGGACTTTA  250

seq1  CAATTTGACAACAAAGTCAACAGAGTCAGAAACGTGAGTGAGATCCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGACAACAAAGTCAACAGAGTCAGAAACGTGAGTGAGATCCTAGT  300

seq1  GGAGTCAAAATAAAACAAACAAGCAAACAATCAAACATCCTTAATATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAATAAAACAAACAAGCAAACAATCAAACATCCTTAATATAAA  350

seq1  GAAGCAAAAAAACAATGATTAATTTCAAAACTATGCAAAATATTGATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAAAAACAATGATTAATTTCAAAACTATGCAAAATATTGATTAC  400

seq1  CAGGTAAATAAAAATGAACCTGGCTTAACTAGTCACATAGTTATTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAATAAAAATGAACCTGGCTTAACTAGTCACATAGTTATTTATAA  450

seq1  AGCCACTGGCAGATGTAGCCTTCAGGACATACATGAGACCTTCCAACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGGCAGATGTAGCCTTCAGGACATACATGAGACCTTCCAACCTG  500

seq1  AAGATCTGGACTTGGCTTACCTATGGAGGCGATCCATGTTTTCTGTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGACTTGGCTTACCTATGGAGGCGATCCATGTTTTCTGTTTAC  550

seq1  CTCTCTTCCTTGAGTGGGTCTTTGGTCCATCCTGTCTGCTGGACTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTTGAGTGGGTCTTTGGTCCATCCTGTCTGCTGGACTTCCTA  600

seq1  TGTATTCACAGCTTATTTGTTTCTTTGCCTCTTATCTCTGCTTCCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCACAGCTTATTTGTTTCTTTGCCTCTTATCTCTGCTTCCCACTG  650

seq1  AGCACTACTCTTCCTGGGGACTGAGATTAAGTTGACTGATGATTTCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACTCTTCCTGGGGACTGAGATTAAGTTGACTGATGATTTCCTGC  700

seq1  AGCGCTCCCTCTTTCCCAGCATGATCTCATGCACATCCATCAGCGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCCCTCTTTCCCAGCATGATCTCATGCACATCCATCAGCGGAGGA  750

seq1  ATGTGAGCTAGAGAGGTGGCCTAGCAGGTAAGAGGAGCCTCTGCTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCTAGAGAGGTGGCCTAGCAGGTAAGAGGAGCCTCTGCTCTTCC  800

seq1  ATGGAACCAGGTTTGACTCCCAGCTTCTAACTCCAGCTCTAGGGCATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCAGGTTTGACTCCCAGCTTCTAACTCCAGCTCTAGGGCATCTG  850

seq1  ACACCTTCTTCTGCTCTCTGTGGGCACTGTGCTCACTTGTACTCGAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCTTCTGCTCTCTGTGGGCACTGTGCTCACTTGTACTCGAGTGC  900

seq1  ACATGTTTGCACACACACAACCATACACATACATTCAAACTTATATACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTGCACACACACAACCATACACATACATTCAAACTTATATACTC  950

seq1  TCACACATAAAAACTACAATGAAAAACAGAATTTCTGTATAACTTTGTTT  1000
      |||||||| |||||||||||| ||||||| |||||||||| |||||||| 
seq2  TCACACAT-AAAACTACAATG-AAAACAG-ATTTCTGTAT-ACTTTGTT-  995

seq1  CTGTTCATTTCACACACACACACACACACACACACACACACACACACACA  1050
       |||||||||   |||| ||||| ||||||||| ||||||||| ||||||
seq2  -TGTTCATTTTCAACAC-CACAC-CACACACAC-CACACACACCCACACA  1041

seq1  CACACACACACACATACACTAAAGAAACTTAACAAAGAAGAGGCCTGGTC  1100
      ||| ||||| ||| |   ||||   ||||||   ||| ||||||||||||
seq2  CAC-CACAC-CACTT--CCTAA--GAACTTA--CAAGGAGAGGCCTGGTC  1083

seq1  ATTACGTTTATTGTCTTATCATTAG-TGATCTAAGCTTGTGGTTTCAGAA  1149
        |||| ||||||||||   ||||| |||||||||| ||||| |||||||
seq2  CATACG-TTATTGTCTTTATATTAGTTGATCTAAGCCTGTGG-TTCAGAA  1131

seq1  T  1150
      |
seq2  T  1132