BAC Information

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BAC

Clone NameB6Ng01-116I13
Chromosome6 (Build37)
Map Location 47,931,953 - 48,074,122
singlet/doubletdoublet
Overlap geneZfp777, Zfp746
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I13.bB6Ng01-116I13.g
ACCDH921507DH921508
length2631,087
definitionDH921507|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I13, 5' end.DH921508|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,073,860 - 48,074,122)(47,931,953 - 47,933,043)
sequence
aggacctctggaagagcagtcagtgctgttaactgctgagccatctctcc
acccccctccctgaactcttacaagtgatataaatttcagaaccataacc
ctgagtgatgaatctattgaacaactaggagctaaatatgtcactcctgg
gggttatctgatttccctgtgatatgggaggatgggaaggaagggtgtga
ttgcaagctaagcttcttaggtcccttctcagatctcacaagtctctaag
tctaaagggacta
gaattccaactaaattattgacaagctttgcctgggtaggggaaataaac
agatttaattctaaggttcctttaaaaatattttgttatatatgttaaat
atatattgttatggaattcacacacacacacacacacacacacattcatt
ctagcactcaggagcagaggcaggtagatctctggctttgaggtccacat
cttaggctgcattttcccatccactgatggtgcttcctacgagcccagca
ctggatggcagcacagggtgaatgcagtctagctttcctgattcatctgc
ctgatggagttcccacaccccaggagcaaggcagaatggggaaccaaaat
tgaggcacttggaatttcaaattttgttttagcttttcatagtttgacaa
agcaggctctttgagcattggttaccacttggacaccctagggcacgttc
tgtgtctaagattccagtggctggaatgtggggaagacttaccttggttc
tgaattctcatgagggtacaggcagctgttccaggaggagccttccaaga
tgtccctctgccatggctgttggaaaaaaaacttagtgccttgctggtac
gggaaggaggtctccctttttgctacgtggggctcttcacagagcagctc
catgtgtccccatggcactcccttgacttctcccagagatccaaggaata
gcagatgtcatcagtgtgttcagtgaccaggttcagaagtgactatttca
cttctgttacatcctactcattagaatggtgtttaccaaggcatctctca
ttcaaaagaaggtcaatttgagcttcatagtcttcaaagaggcatatcaa
agacttgtgagcaaacccacaacagttcactcaaagttgaagagctgaac
tttcccaaatgactctgagctggagattttccagcctgatgagttagctt
agagctaaaatggcttcagaaagattcatcatagatggcatctggattaa
accagggtcccttattattattggcatatattttatatatttataatatt
ggcaataatttatagaaaatatttttatgatgacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48073860_48074122
seq2: B6Ng01-116I13.b_53_315 (reverse)

seq1  TAGTCCCTTTAGACTTTGTGACTTGTGAGGTCTGAGCTGGGGCCTGAGAA  50
      |||||||||||||||| | |||||||||| ||||||  ||| ||| ||||
seq2  TAGTCCCTTTAGACTTAGAGACTTGTGAGATCTGAGAAGGGACCTAAGAA  50

seq1  GCTTAGCTTGCAATCACACCCTTCCTTCCCATCCTCCCATATCACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTTGCAATCACACCCTTCCTTCCCATCCTCCCATATCACAGGGA  100

seq1  AATCAGATAACCCCCAGGAGTGACATATTTAGCTCCTAGTTGTTCAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATAACCCCCAGGAGTGACATATTTAGCTCCTAGTTGTTCAATAG  150

seq1  ATTCATCACTCAGGGTTATGGTTCTGAAATTTATATCACTTGTAAGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCACTCAGGGTTATGGTTCTGAAATTTATATCACTTGTAAGAGTT  200

seq1  CAGGGAGGGGGGTGGAGAGATGGCTCAGCAGTTAACAGCACTGACTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGGGGTGGAGAGATGGCTCAGCAGTTAACAGCACTGACTGCTC  250

seq1  TTCCAGAGGTCCT  263
      |||||||||||||
seq2  TTCCAGAGGTCCT  263

seq1: chr6_47931953_47933043
seq2: B6Ng01-116I13.g_70_1156

seq1  GAATTCCAACTAAATTATTGACAAGCTTTGCCTGGGTAGGGGAAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTAAATTATTGACAAGCTTTGCCTGGGTAGGGGAAATAAAC  50

seq1  AGATTTAATTCTAAGGTTCCTTTAAAAATATTTTGTTATATATGTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATTCTAAGGTTCCTTTAAAAATATTTTGTTATATATGTTAAAT  100

seq1  ATATATTGTTATGGAATTCACACACACACACACACACACACACATTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTTATGGAATTCACACACACACACACACACACACACATTCATT  150

seq1  CTAGCACTCAGGAGCAGAGGCAGGTAGATCTCTGGCTTTGAGGTCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTCAGGAGCAGAGGCAGGTAGATCTCTGGCTTTGAGGTCCACAT  200

seq1  CTTAGGCTGCATTTTCCCATCCACTGATGGTGCTTCCTACGAGCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTGCATTTTCCCATCCACTGATGGTGCTTCCTACGAGCCCAGCA  250

seq1  CTGGATGGCAGCACAGGGTGAATGCAGTCTAGCTTTCCTGATTCATCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGCAGCACAGGGTGAATGCAGTCTAGCTTTCCTGATTCATCTGC  300

seq1  CTGATGGAGTTCCCACACCCCAGGAGCAAGGCAGAATGGGGAACCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGTTCCCACACCCCAGGAGCAAGGCAGAATGGGGAACCAAAAT  350

seq1  TGAGGCACTTGGAATTTCAAATTTTGTTTTAGCTTTTCATAGTTTGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACTTGGAATTTCAAATTTTGTTTTAGCTTTTCATAGTTTGACAA  400

seq1  AGCAGGCTCTTTGAGCATTGGTTACCACTTGGACACCCTAGGGCACGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTCTTTGAGCATTGGTTACCACTTGGACACCCTAGGGCACGTTC  450

seq1  TGTGTCTAAGATTCCAGTGGCTGGAATGTGGGGAAGACTTACCTTGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAAGATTCCAGTGGCTGGAATGTGGGGAAGACTTACCTTGGTTC  500

seq1  TGAATTCTCATGAGGGTACAGGCAGCTGTTCCAGGAGGAGCCTTCCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCATGAGGGTACAGGCAGCTGTTCCAGGAGGAGCCTTCCAAGA  550

seq1  TGTCCCTCTGCCATGGCTGTTGGAAAAAAAACTTAGTGCCTTGCTGGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTGCCATGGCTGTTGGAAAAAAAACTTAGTGCCTTGCTGGTAC  600

seq1  GGGAAGGAGGTCTCCCTTTTTGCTACGTGGGGCTCTTCACAGAGCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGGTCTCCCTTTTTGCTACGTGGGGCTCTTCACAGAGCAGCTC  650

seq1  CATGTGTCCCCATGGCACTCCCTTGACTTCTCCCAGAGATCCAAGGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCCCCATGGCACTCCCTTGACTTCTCCCAGAGATCCAAGGAATA  700

seq1  GCAGATGTCATCAGTGTGTTCAGTGACCAGGTTCAGAAGTGACTATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTCATCAGTGTGTTCAGTGACCAGGTTCAGAAGTGACTATTTCA  750

seq1  CTTCTGTTACATCCTACTCATTAGAATGGTG-TTACCAAGGCATCTCTCA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCTGTTACATCCTACTCATTAGAATGGTGTTTACCAAGGCATCTCTCA  800

seq1  TTCAAAAGAAGGTCAA-TTGAGCTTCATAGCCTTCAAAGAGGCATATCAA  848
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TTCAAAAGAAGGTCAATTTGAGCTTCATAGTCTTCAAAGAGGCATATCAA  850

seq1  AGACTTGTGAGCAAACCCACAACAGTTCACTCAAAGTTGAAGGAGCTGAA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTTGTGAGCAAACCCACAACAGTTCACTCAAAGTTGAA-GAGCTGAA  899

seq1  CTTTCCCAAATGGACTCTGAGCT-GAGATTTTCCAGCCTGATGAGTTAGC  947
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CTTTCCCAAAT-GACTCTGAGCTGGAGATTTTCCAGCCTGATGAGTTAGC  948

seq1  TTCAGAGGCTAAAATGGCTTCAGAAAGATTCATTCAAAGATGGCATCTGG  997
      || ||| ||||||||||||||||||||||||| ||| |||||||||||||
seq2  TT-AGA-GCTAAAATGGCTTCAGAAAGATTCA-TCATAGATGGCATCTGG  995

seq1  ATTTAAACCAGGGGTCCCTTAGTAATTATTGGCATATA-TTTATATATTT  1046
      | |||||||| |||||||||| | |||||||||||||| |||||||||||
seq2  A-TTAAACCA-GGGTCCCTTA-TTATTATTGGCATATATTTTATATATTT  1042

seq1  AT-ATATTGGCATATAA-TTATAGAATAATAGTTTTATGATGACATG  1091
      || ||||||||| |||| |||||||| |||| |||||||||||||||
seq2  ATAATATTGGCA-ATAATTTATAGAA-AATATTTTTATGATGACATG  1087