BAC Information

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BAC

Clone NameB6Ng01-117B21
Chromosome6 (Build37)
Map Location 20,962,164 - 20,963,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B21.bB6Ng01-117B21.g
ACCDH921939DH921940
length9591,151
definitionDH921939|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B21, 5' end.DH921940|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtctggcagttcctcaaaatttggaccaagtactacctgaaga
tccagcagtacctctcctgggcatatacccagaaggtgttccaacttgta
atatggacaaatgccccaccatgttcatagcagccttatttataataacc
agaagctggaaagaaaccagatgtccctcaacagagggttggatacagaa
aatgtgctacatttatacaatggagtactattcagcaattaaaaacaatg
aatttatgaaattcttaggcaaatagatggatctggagaatatcatcctg
agtgaagtaacccaatcacaaaagaacacacatggtatgtactcactgat
aagtggatagccggaaacttagaatacccaaaatacatgaacctcaagaa
gaacctcaagaagaaggaagaccaaagtgtggatactttgtttcttcttt
gaatggggaacaaaatatcaatggaaggagttacagtgacaaagtttgga
gcagagatggaaggaaggaccatccagagactaccctaccctgggatcca
tcccataaacaatcaccatacccagacaatattgcatatgcctgcaagat
tttgctgacaggaccctgatatagctggctcttgtgaggctatgacagtg
cctggaaaatactgaagaggatgctcacagtcacctattggatggaacaa
aggtcccccaatggaggagctagagaaagtacctaaggagctaaaggggt
ctgcaaccctataggaggaacaacaatatgaactaatcagtacccccaga
acttgtgtctctagttgcatatgtagcagagaatggcctagtaggccatc
aatgggaggaaaagcccttggtcttgggaagattatatgccccaatatag
gggaatgtcagtccaggtagtggaagtgggtgcgttcggtagtggggtag
gtggtgggt

gaattcattatgacaacacagacaagacaaactaactgctcaacagggcc
ttttaaaaggaaatacaacacggatattgtccctgttctgactctatgct
aattaggaaatgctaaacagttgctacagtaagaccgtgcacatatctca
gacctacttctcttcctaggctgggttttctcagtgctggtgacaggtat
gatttgattgttttgtgtaatcaatgactaagattctggtttctttaact
agccttaaggaaagtgaaattgcagctgctgtaataatttgcagataatc
aatttaatctgctttcttgtctagggaacatgtggccattttagggaaat
tctgtgattgccactaaccattgagtgaaatgtaaaactacaattttcat
tttctagggaaaaagaaatatggattctgataagctttgaacctttgggt
accctcttagctttgaagataacttttgcttggtgctctctcttggcatt
tcgacttaaattgctgtggttaactcttaaattgtttgcacctccaggaa
aagtctatggtaatacttgaagtaacatttttatttaaaataacttactt
caggggaagatgttatatattcaacttctaaattttgtataattgctgaa
cacagaatatttatgagaatgaaaacttgcagtcaagtttttgtattgga
aaaatgatgttactttaaggctgatctttaaatataaataaaaaatggtt
gaatgactagtaataatatagcataacctgaaatagatgggtaataaaag
agaggagtgtaaagagtcaatagaggtatattaaaaattgaatcccatat
gtattaaaatagtaatagcacagtagggaagattacaagaaaaatgactt
tattggacactggttaatattatttttacaagatatgtgaaggtttttcc
actgaagaaatgcagaagataatggcatagtgctcatgaaaggtgtgagc
catccagattaattaggaaaatagtttgaggaataatgggtaactgggac
tttgagaactgaagagtgatgccataattcagtagccaggaaagtagcaa
aatgttcaagtgtgcgatatattgacatgccacttgctagaagacagaaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20962164_20963309
seq2: B6Ng01-117B21.g_65_1215 (reverse)

seq1  ATTTCTG-CTTCTTAGCCAGTGGCATGTC-ATATATCG--CACTTG-ACA  45
      ||||||| |||| |||| ||||||||||| ||||||||  |||||| |||
seq2  ATTTCTGTCTTC-TAGCAAGTGGCATGTCAATATATCGCACACTTGAACA  49

seq1  TTTGTGCTACCTTCCCTGGCTACTTGAATATGGCCATCACTCTTCAG-TC  94
      ||| ||||| ||| ||||||||||  | ||||| ||||||||||||| ||
seq2  TTT-TGCTA-CTTTCCTGGCTACTGAATTATGG-CATCACTCTTCAGTTC  96

seq1  TCAAAGT-CCAGTACCTCATTATGTCCTCAAACTATTTT-CTAATTAATC  142
      ||||||| |||||  | |||||| ||||||||||||||| ||||||||||
seq2  TCAAAGTCCCAGTTACCCATTAT-TCCTCAAACTATTTTCCTAATTAATC  145

seq1  TGGATGGCTCACACCTTTCATGAGCACTATGCCATTATCTTCTGCATTTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCTCACACCTTTCATGAGCACTATGCCATTATCTTCTGCATTTC  195

seq1  TTCAGGTGGAATACCTTCACATATCTTGT-ATAATAATATT-ACCAGTGT  240
      |||||  | || ||||||||||||||||| | ||||||||| ||||||||
seq2  TTCAGTGGAAAAACCTTCACATATCTTGTAAAAATAATATTAACCAGTGT  245

seq1  CCAATAAAGTCATTTTTCTTGTAATCTTCCCTACTGTGCTATTACTATTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGTCATTTTTCTTGTAATCTTCCCTACTGTGCTATTACTATTT  295

seq1  TAATACATATGGGATTCAATTTTTAATATACCTCTATTGACTCTTTACAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATATGGGATTCAATTTTTAATATACCTCTATTGACTCTTTACAC  345

seq1  TCCTCTCTTTTATTACCCATCTATTTCAGGTTATGCTATATTATTACTAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTTATTACCCATCTATTTCAGGTTATGCTATATTATTACTAG  395

seq1  TCATTCAACCATTTTTTATTTATATTTAAAGATCAGCCTTAAAGTAACAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACCATTTTTTATTTATATTTAAAGATCAGCCTTAAAGTAACAT  445

seq1  CATTTTTCCAATACAAAAACTTGACTGCAAGTTTTCATTCTCATAAATAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCAATACAAAAACTTGACTGCAAGTTTTCATTCTCATAAATAT  495

seq1  TCTGTGTTCAGCAATTATACAAAATTTAGAAGTTGAATATATAACATCTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCAGCAATTATACAAAATTTAGAAGTTGAATATATAACATCTT  545

seq1  CCCCTGAAGTAAGTTATTTTAAATAAAAATGTTACTTCAAGTATTACCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAGTAAGTTATTTTAAATAAAAATGTTACTTCAAGTATTACCAT  595

seq1  AGACTTTTCCTGGAGGTGCAAACAATTTAAGAGTTAACCACAGCAATTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCCTGGAGGTGCAAACAATTTAAGAGTTAACCACAGCAATTTA  645

seq1  AGTCGAAATGCCAAGAGAGAGCACCAAGCAAAAGTTATCTTCAAAGCTAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAAATGCCAAGAGAGAGCACCAAGCAAAAGTTATCTTCAAAGCTAA  695

seq1  GAGGGTACCCAAAGGTTCAAAGCTTATCAGAATCCATATTTCTTTTTCCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTACCCAAAGGTTCAAAGCTTATCAGAATCCATATTTCTTTTTCCC  745

seq1  TAGAAAATGAAAATTGTAGTTTTACATTTCACTCAATGGTTAGTGGCAAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGAAAATTGTAGTTTTACATTTCACTCAATGGTTAGTGGCAAT  795

seq1  CACAGAATTTCCCTAAAATGGCCACATGTTCCCTAGACAAGAAAGCAGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTTCCCTAAAATGGCCACATGTTCCCTAGACAAGAAAGCAGAT  845

seq1  TAAATTGATTATCTGCAAATTATTACAGCAGCTGCAATTTCACTTTCCTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGATTATCTGCAAATTATTACAGCAGCTGCAATTTCACTTTCCTT  895

seq1  AAGGCTAGTTAAAGAAACCAGAATCTTAGTCATTGATTACACAAAACAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGTTAAAGAAACCAGAATCTTAGTCATTGATTACACAAAACAAT  945

seq1  CAAATCATACCTGTCACCAGCACTGAGAAAACCCAGCCTAGGAAGAGAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATACCTGTCACCAGCACTGAGAAAACCCAGCCTAGGAAGAGAAG  995

seq1  TAGGTCTGAGATATGTGCACGGTCTTACTGTAGCAACTGTTTAGCATTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGAGATATGTGCACGGTCTTACTGTAGCAACTGTTTAGCATTTC  1045

seq1  CTAATTAGCATAGAGTCAGAACAGGGACAATATCCGTGTTGTATTTCCTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGCATAGAGTCAGAACAGGGACAATATCCGTGTTGTATTTCCTT  1095

seq1  TTAAAAGGCCCTGTTGAGCAGTTAGTTTGTCTTGTCTGTGTTGTCATAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCCCTGTTGAGCAGTTAGTTTGTCTTGTCTGTGTTGTCATAAT  1145

seq1  GAATTC  1146
      ||||||
seq2  GAATTC  1151


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