BAC Information

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BAC

Clone NameB6Ng01-117E21
Chromosome6 (Build37)
Map Location 28,882,351 - 29,032,007
singlet/doubletdoublet
Overlap geneLOC100041367, Lep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E21.bB6Ng01-117E21.g
ACCDH922078DH922079
length1,1591,181
definitionDH922078|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E21, 5' end.DH922079|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,030,833 - 29,032,007)(28,882,351 - 28,883,553)
sequence
gaattcccatggtcttgtccatgtgacaaggctttggaagccacatctgc
cttgggatcgcctacgtggacagactgtcccgaatcctgcctcgtcccgt
gcctttttctttgctcctaaacttaatagcctgaatacagagaggtgcat
aggagtttagttcttgaaaccagagacccattcaacccgcagacacttgt
tttgtacctattgtgtgccaagacctgtcctggatactggggttacagag
ggagataaaacagcccaaaagatcaaccctgcttgctgggagcctacatg
ttcatataggacgatcaattaacaaaacatgaatgtgggggctactgaaa
aggtaaggaggggaacatgaggtttaaagagctcttcagggtggcaagat
ggctcagcagggaaggcacatctgctgcaatcctggcaacccaggtggaa
ggagagactccaaagttgtcctttgacttccacatccatgctgggttatg
tgcacgcccacccaaactcgccatggacacacaatggtagtaaatacaaa
tttcaaaaagtattattaaagagttcttcaccagagagatatgagagaga
gtctgaggccagccaggcaatgaaaggtagcagacctaggggcaaacctg
gagaccacagtgcaggccttctgaccttctgtgggtgtgtgtcccagacc
tcagtgttaggatggagatgaggctctgatgagagcagaggacgtgctga
aaaccagtgggaatctggatgcgtgtttggggcaggaatgagctgggttc
acgtcacgtatacatggatccatcttggcctggatataggacagagattc
aaatcctcagatgtgagttatggggcaagcattattatccaataactggg
atgaatactaagacaccctgccacgctctgccaagggtggcaggatcaca
aaccctgccttcctaaagcatggagggaggacccaggctgtctcatgctc
ctagatcagtcaccagtgtgcagacctattcaagatttaatgcatggtct
actcatagagggagggacttgggggctgaactgtccaagccctgggtggg
aaggctaggctttccatggtactagctggtctctcagaaaatgcatatac
atttgacat
gaattctgggtaggatctcctgaggtcctgaggcaagacaggaactagct
tgttctggcttctggccaggatgaactgcaggggttctggagcgctaggt
tgcggggaggggcgttcctgttcaggccgcacaacccttacacagggagg
actccagatcctccgcctgcccctgacctccaagccctgcagtcttcgga
atgaagccttcaagttggcaccagatcattcccagaaaccggaggcagag
atggcatgacccacgcgggctgcatcccagatgcgtttctgtggaggcag
tggcagggaaacgctgtcactgacttggggtgtttggaaagcggcagata
attgggaactggctattcacagaactcagggcactaatgtgaggccccgc
agtgatcatgttaatggagggcttgggagtttctgctgccagacaccctg
gtgactgctgtagaattttggcagacagaaggcaaaggacgcactgtgga
aatcactagagcgtagagaagccggctcccacagcgttccccagcagctg
tatgtgagccttggagcgtgtgttctcccaggcaaggtctctgtgcaccc
ttcttcaaatccctgcctctccagtaagggaacccaagaagcagcctgga
gaaatggattcatccgtaaagtgcttgtcctgccctggcccagctcaaaa
aataaagtggagagcagccgaggaagagatctttgatgagcacacatgtg
tgcgcacaagcacgcgcacatacacaaacatgtacacacaataaatatat
acattacacagaacgcatatacacataaagagatttgctgaaaactggag
cagtgaggactgtgtgtggtttattattagacatcgggttaggcacgcta
aactgtgagcatatgtagaccacaccaatataaatatctaataattttat
atccgatgtttgagttccttttaattaccaaacgctcagcagtactcttg
tgttttctttcagttacttgaaatatcatggtccgaaatatcaaatggaa
aatctaagaaatgaacagtagagctgtcggaataccaaggagtgcaagtc
attcatgccaagactgagacaaggatgaaagaagcaccttctgtgaccct
ctatgctgtctaatggcatgcctatgtccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29030833_29032007
seq2: B6Ng01-117E21.b_41_1199 (reverse)

seq1  ATGTCTAATGTATATGCATTTCTCTGAGGAGAACAAGCCATGTA-CATAG  49
      ||||| ||||||||||||||| ||||| ||| || ||| | ||| ||| |
seq2  ATGTCAAATGTATATGCATTT-TCTGA-GAG-ACCAGCTA-GTACCATGG  46

seq1  GAAGCCTAGCCTTTCCACACAGGGGCTTGTGACAGTCAAGCCCCCCAGCT  99
       |||||||||||| |||| || ||||||| ||||||  ||||||| || |
seq2  AAAGCCTAGCCTTCCCACCCA-GGGCTTG-GACAGTTCAGCCCCCAAG-T  93

seq1  CCCTCCCTCTTATGGAGTTAGACCATGCCATTAAATCTTTGGAATAGGTC  149
      ||||||||| ||| ||| ||||||||| |||||||||||  |||||||||
seq2  CCCTCCCTC-TAT-GAG-TAGACCATG-CATTAAATCTT--GAATAGGTC  137

seq1  TGCACACTGGTGACTGATCTAGGGAGCATGGAGACAGCCTGGGTCCTCCC  199
      ||||||||||||||||||||| ||||||| ||||||||||||||||| ||
seq2  TGCACACTGGTGACTGATCTA-GGAGCAT-GAGACAGCCTGGGTCCT-CC  184

seq1  CTCCATGCTTTAGGAAGGCAGGGTTTGTGATCCCTGCCACCCTTGGCAGA  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCATGCTTTAGGAAGGCAGGGTTTGTGAT-CCTGCCACCCTTGGCAGA  233

seq1  GCGTGGCAGGGTGTCTTAGTATTCATCCCAGTTATTGGATAATAATGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCAGGGTGTCTTAGTATTCATCCCAGTTATTGGATAATAATGCTT  283

seq1  GCCCCATAACTCACATCTGAGGATTTGAATCTCTGTCCTATATCCAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAACTCACATCTGAGGATTTGAATCTCTGTCCTATATCCAGGCC  333

seq1  AAGATGGATCCATGTATACCTGACCTGAACCCAGCTCATTCCTGCCCCAA  399
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  AAGATGGATCCATGTATACGTGACGTGAACCCAGCTCATTCCTGCCCCAA  383

seq1  ACACGCATCCAGATTCCCACTGGTTTTCAGCACGTCCTCTGCTCTCATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATCCAGATTCCCACTGGTTTTCAGCACGTCCTCTGCTCTCATCA  433

seq1  GAGCCTCATCTCCATCCTAACACTGAGGTCTGGGACACACACCCACAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATCTCCATCCTAACACTGAGGTCTGGGACACACACCCACAGAA  483

seq1  GGTCAGAAGGCCTGCACTGTGGTCTCCAGGTTTGCCCCTAGGTCTGCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAGGCCTGCACTGTGGTCTCCAGGTTTGCCCCTAGGTCTGCTAC  533

seq1  CTTTCATTGCCTGGCTGGCCTCAGACTCTCTCTCATATCTCTCTGGTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTGCCTGGCTGGCCTCAGACTCTCTCTCATATCTCTCTGGTGAA  583

seq1  GAACTCTTTAATAATACTTTTTGAAATTTGTATTTACTACCATTGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTTAATAATACTTTTTGAAATTTGTATTTACTACCATTGTGTGT  633

seq1  CCATGGCGAGTTTGGGTGGGCGTGCACATAACCCAGCATGGATGTGGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCGAGTTTGGGTGGGCGTGCACATAACCCAGCATGGATGTGGAAG  683

seq1  TCAAAGGACAACTTTGGAGTCTCTCCTTCCACCTGGGTTGCCAGGATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGACAACTTTGGAGTCTCTCCTTCCACCTGGGTTGCCAGGATTGC  733

seq1  AGCAGATGTGCCTTCCCTGCTGAGCCATCTTGCCACCCTGAAGAGCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGTGCCTTCCCTGCTGAGCCATCTTGCCACCCTGAAGAGCTCTT  783

seq1  TAAACCTCATGTTCCCCTCCTTACCTTTTCAGTAGCCCCCACATTCATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCATGTTCCCCTCCTTACCTTTTCAGTAGCCCCCACATTCATGT  833

seq1  TTTGTTAATTGATCGTCCTATATGAACATGTAGGCTCCCAGCAAGCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATTGATCGTCCTATATGAACATGTAGGCTCCCAGCAAGCAGGG  883

seq1  TTGATCTTTTGGGCTGTTTTATCTCCCTCTGTAACCCCAGTATCCAGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTTGGGCTGTTTTATCTCCCTCTGTAACCCCAGTATCCAGGAC  933

seq1  AGGTCTTGGCACACAATAGGTACAAAACAAGTGTCTGCGGGTTGAATGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGGCACACAATAGGTACAAAACAAGTGTCTGCGGGTTGAATGGG  983

seq1  TCTCTGGTTTCAAGAACTAAACTCCTATGCACCTCTCTGTATTCAGGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTTCAAGAACTAAACTCCTATGCACCTCTCTGTATTCAGGCTA  1033

seq1  TTAAGTTTAGGAGCAAAGAAAAAGGCACGGGACGAGGCAGGATTCGGGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAGGAGCAAAGAAAAAGGCACGGGACGAGGCAGGATTCGGGAC  1083

seq1  AGTCTGTCCACGTAGGCGATCCCAAGGCAGATGTGGCTTCCAAAGCCTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCCACGTAGGCGATCCCAAGGCAGATGTGGCTTCCAAAGCCTTG  1133

seq1  TCACATGGACAAGACCATGGGAATTC  1175
      ||||||||||||||||||||||||||
seq2  TCACATGGACAAGACCATGGGAATTC  1159

seq1: chr6_28882351_28883553
seq2: B6Ng01-117E21.g_65_1245

seq1  GAATTCTGGGTAGGATCTCCTGAGGTCCTGAGGCAAGACAGGAACTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTAGGATCTCCTGAGGTCCTGAGGCAAGACAGGAACTAGCT  50

seq1  TGTTCTGGCTTCTGGCCAGGATGAACTGCAGGGGTTCTGGAGCGCTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCTTCTGGCCAGGATGAACTGCAGGGGTTCTGGAGCGCTAGGT  100

seq1  TGCGGGGAGGGGCGTTCCTGTTCAGGCCGCACAACCCTTACACAGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGAGGGGCGTTCCTGTTCAGGCCGCACAACCCTTACACAGGGAGG  150

seq1  ACTCCAGATCCTCCGCCTGCCCCTGACCTCCAAGCCCTGCAGTCTTCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGATCCTCCGCCTGCCCCTGACCTCCAAGCCCTGCAGTCTTCGGA  200

seq1  ATGAAGCCTTCAAGTTGGCACCAGATCATTCCCAGAAACCGGAGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCTTCAAGTTGGCACCAGATCATTCCCAGAAACCGGAGGCAGAG  250

seq1  ATGGCATGACCCACGCGGGCTGCATCCCAGATGCGTTTCTGTGGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGACCCACGCGGGCTGCATCCCAGATGCGTTTCTGTGGAGGCAG  300

seq1  TGGCAGGGAAACGCTGTCACTGACTTGGGGTGTTTGGAAAGCGGCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGAAACGCTGTCACTGACTTGGGGTGTTTGGAAAGCGGCAGATA  350

seq1  ATTGGGAACTGGCTATTCACAGAACTCAGGGCACTAATGTGAGGCCCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAACTGGCTATTCACAGAACTCAGGGCACTAATGTGAGGCCCCGC  400

seq1  AGTGATCATGTTAATGGAGGGCTTGGGAGTTTCTGCTGCCAGACACCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCATGTTAATGGAGGGCTTGGGAGTTTCTGCTGCCAGACACCCTG  450

seq1  GTGACTGCTGTAGAATTTTGGCAGACAGAAGGCAAAGGACGCACTGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCTGTAGAATTTTGGCAGACAGAAGGCAAAGGACGCACTGTGGA  500

seq1  AATCACTAGAGCGTAGAGAAGCCGGCTCCCACAGCGTTCCCCAGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTAGAGCGTAGAGAAGCCGGCTCCCACAGCGTTCCCCAGCAGCTG  550

seq1  TATGTGAGCCTTGGAGCGTGTGTTCTCCCAGGCAAGGTCTCTGTGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCCTTGGAGCGTGTGTTCTCCCAGGCAAGGTCTCTGTGCACCC  600

seq1  TTCTTCAAATCCCTGCCTCTCCAGTAAGGGAACCCAAGAAGCAGCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAATCCCTGCCTCTCCAGTAAGGGAACCCAAGAAGCAGCCTGGA  650

seq1  GAAATGGATTCATCCGTAAAGTGCTTGTCCTGCCCTGGCCCAGCTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGATTCATCCGTAAAGTGCTTGTCCTGCCCTGGCCCAGCTCAAAA  700

seq1  AATAAAGTGGAGAGCAGCCGAGGAAGAGATCTTTGATGAGCACACATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTGGAGAGCAGCCGAGGAAGAGATCTTTGATGAGCACACATGTG  750

seq1  TGCGCACAAGCACGCGCACATACACAAACATGTACACACAATAAATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACAAGCACGCGCACATACACAAACATGTACACACAATAAATATAT  800

seq1  ACATTACACAGAACGCATATACACATAAAGAGATTTGCTGAAAACTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACACAGAACGCATATACACATAAAGAGATTTGCTGAAAACTGGAG  850

seq1  CAGGTGAGGACTGTGTGTGGTTTATTATTAGACATCGGGTTAGGCACGCT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GTGAGGACTGTGTGTGGTTTATTATTAGACATCGGGTTAGGCACGCT  899

seq1  AAACTGTGAGCAATATGTAGACCACACCAATATAAATATCTAATAATTTT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGAGC-ATATGTAGACCACACCAATATAAATATCTAATAATTTT  948

seq1  ATTATCCGATGTTTGAGTTCCTTTTAATTACCAAACGCTCAGCAGTACTC  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TATCCGATGTTTGAGTTCCTTTTAATTACCAAACGCTCAGCAGTACTC  997

seq1  TTGTGTTTTCTTTCAGTTACTTGAAATTAATCATGGTCCGAAAATATCAA  1050
      |||||||||||||||||||||||||||  ||||||||||| |||||||||
seq2  TTGTGTTTTCTTTCAGTTACTTGAAAT--ATCATGGTCCG-AAATATCAA  1044

seq1  ATGGAAAATTCTAGAAATGAACAAGTTAGAGCTGTCGAGATAACCCAGTG  1100
      |||||||||   |||||||||||   |||||||||||  |||  |||  |
seq2  ATGGAAAATCTAAGAAATGAACA--GTAGAGCTGTCGGAATA--CCAAGG  1090

seq1  AGTGGCAAGTCCATTCAATGCCCAAGACTGAGCACGAGGGATGAAGAGAA  1150
      ||| |||||| ||||| ||| ||||||||||| || | ||||||| ||||
seq2  AGT-GCAAGT-CATTC-ATG-CCAAGACTGAG-AC-AAGGATGAA-AGAA  1133

seq1  GCAACATTCCTGTGACCTCTCTATGCTTGCTCTATGTGGCATGCCTATG-  1199
      ||| |  | |||||||| |||||||||   ||||  ||||||||||||| 
seq2  GCACC--TTCTGTGACC-CTCTATGCT--GTCTA-ATGGCATGCCTATGT  1177

seq1  CCAC  1203
      ||||
seq2  CCAC  1181