BAC Information

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BAC

Clone NameB6Ng01-117I17
Chromosome6 (Build37)
Map Location 99,265,002 - 99,457,839
singlet/doubletdoublet
Overlap genenone
Upstream geneGm765, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I17.bB6Ng01-117I17.g
ACCDH922259DH922260
length8391,048
definitionDH922259|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I17, 5' end.DH922260|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,265,002 - 99,265,840)(99,456,780 - 99,457,839)
sequence
gaattccttccctcagccactctccctgtgtctgcaagccacatacagca
ctggctgggacaaaactgtaagcaatatttccaacaataagaagacctaa
agttcttgctcttaatatgatcaaatgcctctgttgatctgaaatagagg
taccttaaaactttaaagagactttatatacgtaatatatatatatacat
ctatatatagtttaaaatataagtggaatcacaactctaagaaccgggga
ataatattctcttagacttccaaaggcaggcacaaaggctttgtaaatta
gacccaaactgctttccttgattggggaggggggtgtgctttgctaagca
atttttaaggtaagaactaaatgtccagtcacaagacacacagaaagaaa
acaagcagtgtactcccccattgttccctgagaacggagaattgttacaa
ccaagatttggcttgtttttcttatttgttattttagacggcaacataca
gatacataacagagagaagataatgcaagaatctgtatcccagctaatgt
tttattttaacattgctgtgtacaagacgatttgagacgtaaaatgaata
aattcttaggactctgttttacctaaaccatcaatcaaaactggaacaga
agcaagtgaacatagtccagcctgacaaaggaatactttgtcgccattaa
gaataaagctatggagatgattgggacatggcatgaaataagcaagacag
gaaattaacctgtcctagtccttaaagcacataaaacaagctgcaggaag
atcaagaagaattagtcgggacagaagggattagaaatt
gaattctatgaaacaaattcctctgaccgtgtagaaagtttgagtccatg
agccagccctttgacctttcagtaaagacacagaacgtgaggtagaccag
agacgtgtggtgcgaagtcagagagaagtgtgcggtagctttgctcacag
ccaccaccactgatgcaggttcttctctgcaagatgatgtagtgatggct
ttcaaggctttgattctgcccatgtaccctacggcctttctctctttcct
ctagtcctcccccgggctctcaccttttgactacctcctgtccccattag
cctctactcggtcacctgccctggcctttattcccgaaggaggtttctgg
atgttaaattggatttcagcctcaggaaagagccaacatctattgtctta
ttccagtgtgtgaattagggaaggtgcagagagagtgcttctgctttgag
gagttaattattcatgctctggaatagttgacccaagccagccggtaagc
ctgaggaggcagatgctctagcaaccagcaagggtgtactgtccaggagg
atgaagtgagcttcccttatgggggttcaagctttgagttggaagctgag
aagggatttttaattaattaattagctaattctgaattttaaactattaa
cggcatcaccttgaaccaagtggttttgagtctcttctgtaactggtttc
gagtttctacatcttagattctggcatcctgagtgagtagttactgtttg
agtttcaaggggtttcttgagtttgatggtcttactggcagggccagtgg
ctggtgttggccagcagtaggtgcacgtgagcagcctaggcaaagccttt
atcaaagtatcatcagcccatgcaacattgtattttggtggtgggtgttg
gtaatcgtatccttcaatgacttgattcactattatgacaggcacgtgaa
gtcacgtctccttcctgtggtggttgatgaggaggagtgacaaaataatt
cttaatccttcgaactctcttctttcttccagctggtccaaacatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99265002_99265840
seq2: B6Ng01-117I17.b_44_882

seq1  GAATTCCTTCCCTCAGCCACTCTCCCTGTGTCTGCAAGCCACATACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTCAGCCACTCTCCCTGTGTCTGCAAGCCACATACAGCA  50

seq1  CTGGCTGGGACAAAACTGTAAGCAATATTTCCAACAATAAGAAGACCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGACAAAACTGTAAGCAATATTTCCAACAATAAGAAGACCTAA  100

seq1  AGTTCTTGCTCTTAATATGATCAAATGCCTCTGTTGATCTGAAATAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGCTCTTAATATGATCAAATGCCTCTGTTGATCTGAAATAGAGG  150

seq1  TACCTTAAAACTTTAAAGAGACTTTATATACGTAATATATATATATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAAACTTTAAAGAGACTTTATATACGTAATATATATATATACAT  200

seq1  CTATATATAGTTTAAAATATAAGTGGAATCACAACTCTAAGAACCGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATAGTTTAAAATATAAGTGGAATCACAACTCTAAGAACCGGGGA  250

seq1  ATAATATTCTCTTAGACTTCCAAAGGCAGGCACAAAGGCTTTGTAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTCTCTTAGACTTCCAAAGGCAGGCACAAAGGCTTTGTAAATTA  300

seq1  GACCCAAACTGCTTTCCTTGATTGGGGAGGGGGGTGTGCTTTGCTAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAACTGCTTTCCTTGATTGGGGAGGGGGGTGTGCTTTGCTAAGCA  350

seq1  ATTTTTAAGGTAAGAACTAAATGTCCAGTCACAAGACACACAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGGTAAGAACTAAATGTCCAGTCACAAGACACACAGAAAGAAA  400

seq1  ACAAGCAGTGTACTCCCCCATTGTTCCCTGAGAACGGAGAATTGTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGTGTACTCCCCCATTGTTCCCTGAGAACGGAGAATTGTTACAA  450

seq1  CCAAGATTTGGCTTGTTTTTCTTATTTGTTATTTTAGACGGCAACATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTGGCTTGTTTTTCTTATTTGTTATTTTAGACGGCAACATACA  500

seq1  GATACATAACAGAGAGAAGATAATGCAAGAATCTGTATCCCAGCTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAACAGAGAGAAGATAATGCAAGAATCTGTATCCCAGCTAATGT  550

seq1  TTTATTTTAACATTGCTGTGTACAAGACGATTTGAGACGTAAAATGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAACATTGCTGTGTACAAGACGATTTGAGACGTAAAATGAATA  600

seq1  AATTCTTAGGACTCTGTTTTACCTAAACCATCAATCAAAACTGGAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAGGACTCTGTTTTACCTAAACCATCAATCAAAACTGGAACAGA  650

seq1  AGCAAGTGAACATAGTCCAGCCTGACAAAGGAATACTTTGTCGCCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGAACATAGTCCAGCCTGACAAAGGAATACTTTGTCGCCATTAA  700

seq1  GAATAAAGCTATGGAGATGATTGGGACATGGCATGAAATAAGCAAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCTATGGAGATGATTGGGACATGGCATGAAATAAGCAAGACAG  750

seq1  GAAAATTAACCTGCCCTAGTCCTT-AAGCACATAAAACAAGCTGCAGGAA  799
      | ||||||||||| |||||||||| ||||||||||||||||||||||| |
seq2  G-AAATTAACCTGTCCTAGTCCTTAAAGCACATAAAACAAGCTGCAGG-A  798

seq1  AGATCAAGAAGAATTAGTC-GGACAGAAGGGATTAGAAATT  839
      ||||||||||||||||||| |||||||||||||||||||||
seq2  AGATCAAGAAGAATTAGTCGGGACAGAAGGGATTAGAAATT  839

seq1: chr6_99456780_99457839
seq2: B6Ng01-117I17.g_65_1112 (reverse)

seq1  GAAATGTTAGGCACAGCTGGAAGAAAGGAAGAGAGTTCGAAGGGTTAAGA  50
      |||||||| ||  ||||||||||||| |||||||||||||||| ||||||
seq2  GAAATGTTTGGACCAGCTGGAAGAAA-GAAGAGAGTTCGAAGGATTAAGA  49

seq1  ATTCTTTTTGTCAGCTCTCATCATCAAACAACCACAGGGAAAGGAAGACG  100
      |||  ||||||||   ||| ||||| ||| ||||||||  |||| |||||
seq2  ATT-ATTTTGTCACTCCTCCTCATC-AACCACCACAGG--AAGG-AGACG  94

seq1  TGACTACA-GTGCCTTGTCATAAAAGGTGAACTCAGGTCATTGGAAGGAT  149
      ||||| || ||||| |||||||| | ||||| ||| |||||| |||||||
seq2  TGACTTCACGTGCC-TGTCATAATA-GTGAA-TCAAGTCATT-GAAGGAT  140

seq1  AACGATTACCAACACCCAACCACCAAAATACAATGTTTGCATGGGCTGAT  199
       |||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  -ACGATTACCAACACCC-ACCACCAAAATACAATG-TTGCATGGGCTGAT  187

seq1  GATACTTTGATAAAGGCTTTGCCTAGGCTGCTCACGTGCACCTACTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTGATAAAGGCTTTGCCTAGGCTGCTCACGTGCACCTACTGCTG  237

seq1  GCCAACACCAGCCACTGGCCCTGCCAGTAAGACCATCAAACTCAAGAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACACCAGCCACTGGCCCTGCCAGTAAGACCATCAAACTCAAGAAAC  287

seq1  CCCTTGAAACTCAAACAGTAACTACTCACTCAGGATGCCAGAATCTAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAACTCAAACAGTAACTACTCACTCAGGATGCCAGAATCTAAGA  337

seq1  TGTAGAAACTCGAAACCAGTTACAGAAGAGACTCAAAACCACTTGGTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAACTCGAAACCAGTTACAGAAGAGACTCAAAACCACTTGGTTCA  387

seq1  AGGTGATGCCGTTAATAGTTTAAAATTCAGAATTAGCTAATTAATTAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGCCGTTAATAGTTTAAAATTCAGAATTAGCTAATTAATTAATT  437

seq1  AAAAATCCCTTCTCAGCTTCCAACTCAAAGCTTGAACCCCCATAAGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCTTCTCAGCTTCCAACTCAAAGCTTGAACCCCCATAAGGGAA  487

seq1  GCTCACTTCATCCTCCTGGACAGTACACCCTTGCTGGTTGCTAGAGCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCATCCTCCTGGACAGTACACCCTTGCTGGTTGCTAGAGCATC  537

seq1  TGCCTCCTCAGGCTTACCGGCTGGCTTGGGTCAACTATTCCAGAGCATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCAGGCTTACCGGCTGGCTTGGGTCAACTATTCCAGAGCATGA  587

seq1  ATAATTAACTCCTCAAAGCAGAAGCACTCTCTCTGCACCTTCCCTAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAACTCCTCAAAGCAGAAGCACTCTCTCTGCACCTTCCCTAATTC  637

seq1  ACACACTGGAATAAGACAATAGATGTTGGCTCTTTCCTGAGGCTGAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGGAATAAGACAATAGATGTTGGCTCTTTCCTGAGGCTGAAATC  687

seq1  CAATTTAACATCCAGAAACCTCCTTCGGGAATAAAGGCCAGGGCAGGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAACATCCAGAAACCTCCTTCGGGAATAAAGGCCAGGGCAGGTGA  737

seq1  CCGAGTAGAGGCTAATGGGGACAGGAGGTAGTCAAAAGGTGAGAGCCCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTAGAGGCTAATGGGGACAGGAGGTAGTCAAAAGGTGAGAGCCCGG  787

seq1  GGGAGGACTAGAGGAAAGAGAGAAAGGCCGTAGGGTACATGGGCAGAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACTAGAGGAAAGAGAGAAAGGCCGTAGGGTACATGGGCAGAATC  837

seq1  AAAGCCTTGAAAGCCATCACTACATCATCTTGCAGAGAAGAACCTGCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTGAAAGCCATCACTACATCATCTTGCAGAGAAGAACCTGCATC  887

seq1  AGTGGTGGTGGCTGTGAGCAAAGCTACCGCACACTTCTCTCTGACTTCGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTGGCTGTGAGCAAAGCTACCGCACACTTCTCTCTGACTTCGC  937

seq1  ACCACACGTCTCTGGTCTACCTCACGTTCTGTGTCTTTACTGAAAGGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACGTCTCTGGTCTACCTCACGTTCTGTGTCTTTACTGAAAGGTCA  987

seq1  AAGGGCTGGCTCATGGACTCAAACTTTCTACACGGTCAGAGGAATTTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGCTCATGGACTCAAACTTTCTACACGGTCAGAGGAATTTGTT  1037

seq1  TCATAGAATTC  1060
      |||||||||||
seq2  TCATAGAATTC  1048