BAC Information

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BAC

Clone NameB6Ng01-117J06
Chromosome6 (Build37)
Map Location 42,619,152 - 42,767,513
singlet/doubletdoublet
Overlap gene3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450
Upstream geneTrpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487
Downstream geneOlfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117J06.bB6Ng01-117J06.g
ACCDH922282DH922283
length1,1681,136
definitionDH922282|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J06, 5' end.DH922283|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,619,152 - 42,620,334)(42,766,354 - 42,767,513)
sequence
gaattctgggaacaaaagttttcaaaagtcaaccattggttctttgactt
ctagcattcagcactgctagaattctcaggtttggttcagcctctttccc
ttccctgggcactttcaacatgttccttctagccctcctgtttccacttt
tctttaggaccctgcctagatgtggttggtactgggtgccgtccctctgc
tgttcctcaagtctttcttattctctcactgtccaggctttctgtgctgc
cttctggaaactcctaagagttacacagtgattgtctgtttccctttcct
tcttttcaattgtgtgatatttcattttgatgcatgtctggaaagattca
ttctatcttgttttccagtctatatgatgaaaatttatggccatctcgtt
ttgcttttacaatgttcaggattttctcttagtaatgcacctcaagtctc
tcttggagaaatggtcagaattttacagatttttccttataaattatgct
tccattagtttataattcctcaagctttttatgtctaagtggttattttc
tttatgcttcttccttggacccttcgatgtatgaaaaattctatcaggaa
atccatgctgagaatctttgttaactatcagctcgttaaatgagtcctgt
ttctccagcaaatgtctgctatacctagaagctgtgggcttttagggtgt
gagtaagggtgtcacctctgagaagaaaattacctgacaggctagtgggg
cacttatttccatggaaagaatatcctttggagcactaattttttacctc
tcctcaggtggtttatttgatttctttattcaaacaacagtaacaataac
agtttcactagtttcagtggtaggttttctgttttctatgtacaagggtc
ggggctgagtagactgggggtcaatttacaactggtataattatttagta
gctagagttttctagtgctcaagtctcttggggttcagtgttcggatcag
tatattctgtctgaaatgacgcatgtttcccgatcattatttcttctcat
ttactttccttctcctgaaattgttgagatcttctccacaaatgctttta
gtctcttgcttgaaaggtctcagttcttttgattcttgactcaagttcag
tggggcttgggagaggag
gaattcattcacccaagtctggttgataaattcctggcccatgaatttca
caactggacaggtattgcaagctgacacttctgaatttcaagatcatcca
cattgaagatgatcacagtaagatgtaatagtgcttctgaaattaaaaag
aaaagaagtaagatcttcaagatttaaattgttggagcatcatttcttct
ccaaaacacataaccttaaatggcaagaaaattaagtaattttagattca
aagacttatttgacttagtatttcagggactgtgcctctctttgtagtaa
gaaaggttttgtgaacagtaagtctctgaattctaggtgatgtccagttt
catttaacctttttgttactgaatttctcctgtaaagatctcatattaag
tctgcatagtagaatacatccatgaaacatgaaatattttgaatgatatt
catatatattcgatcactaagcaattttaatcttattttgtataattttg
gtgtgtgtatgtgtttaaaagtgttttacaaccttattggggagctataa
tttcaattaattagtagaatttaactactatgtggataataatgataatg
acagttttacagtcaaatagaggacttctaggtcaaccacattataccac
tggtatttcattgcaattcaaagtgtcaatttaagacttggtgttacata
atagcaaaaaataatcccatatgcctttaaggtagatttaatgaagtata
caataatgttatgttcctactgaatagtagtattttcccagtggtgacac
cttgcatttccactggaaaagagattcatccttaagagtaaaaagagaag
agtacaaaatacagcactaactgtaggcatatataatagtgatatttctt
accagctgtgtggctcatgcttataatataaacattttgagatgagatag
agaaagatttccatgaactacacccgccttgttgtttgatgagtccaggc
atctggggtacaatataagatcttgtctaaaatactgcagaaaaacaaca
aaaaggtatagtgtcacttgtgatagttattagaagcttatttaggttct
gccacgcaaggaagagccactgatgactcaattagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42619152_42620334
seq2: B6Ng01-117J06.b_42_1209

seq1  GAATTCTGGGAACAAAAGTTTTCAAAAGTCAACCATTGGTTCTTTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACAAAAGTTTTCAAAAGTCAACCATTGGTTCTTTGACTT  50

seq1  CTAGCATTCAGCACTGCTAGAATTCTCAGGTTTGGTTCAGCCTCTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCAGCACTGCTAGAATTCTCAGGTTTGGTTCAGCCTCTTTCCC  100

seq1  TTCCCTGGGCACTTTCAACATGTTCCTTCTAGCCCTCCTGTTTCCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGGCACTTTCAACATGTTCCTTCTAGCCCTCCTGTTTCCACTTT  150

seq1  TCTTTAGGACCCTGCCTAGATGTGGTTGGTACTGGGTGCCGTCCCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGACCCTGCCTAGATGTGGTTGGTACTGGGTGCCGTCCCTCTGC  200

seq1  TGTTCCTCAAGTCTTTCTTATTCTCTCACTGTCCAGGCTTTCTGTGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCAAGTCTTTCTTATTCTCTCACTGTCCAGGCTTTCTGTGCTGC  250

seq1  CTTCTGGAAACTCCTAAGAGTTACACAGTGATTGTCTGTTTCCCTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAAACTCCTAAGAGTTACACAGTGATTGTCTGTTTCCCTTTCCT  300

seq1  TCTTTTCAATTGTGTGATATTTCATTTTGATGCATGTCTGGAAAGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAATTGTGTGATATTTCATTTTGATGCATGTCTGGAAAGATTCA  350

seq1  TTCTATCTTGTTTTCCAGTCTATATGATGAAAATTTATGGCCATCTCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTGTTTTCCAGTCTATATGATGAAAATTTATGGCCATCTCGTT  400

seq1  TTGCTTTTACAATGTTCAGGATTTTCTCTTAGTAATGCACCTCAAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTACAATGTTCAGGATTTTCTCTTAGTAATGCACCTCAAGTCTC  450

seq1  TCTTGGAGAAATGGTCAGAATTTTACAGATTTTTCCTTATAAATTATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGAAATGGTCAGAATTTTACAGATTTTTCCTTATAAATTATGCT  500

seq1  TCCATTAGTTTATAATTCCTCAAGCTTTTTATGTCTAAGTGGTTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGTTTATAATTCCTCAAGCTTTTTATGTCTAAGTGGTTATTTTC  550

seq1  TTTATGCTTCTTCCTTGGACCCTTCGATGTATGAAAAATTCTATCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTCTTCCTTGGACCCTTCGATGTATGAAAAATTCTATCAGGAA  600

seq1  ATCCATGCTGAGAATCTTTGTTAACTATCAGCTCGTTAAATGAGTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCTGAGAATCTTTGTTAACTATCAGCTCGTTAAATGAGTCCTGT  650

seq1  TTCTCCAGCAAATGTCTGCTATACCTAGAAGCTGTGGGCTTTTAGGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCAAATGTCTGCTATACCTAGAAGCTGTGGGCTTTTAGGGTGT  700

seq1  GAGTAAGGGTGTCACCTCTGAGAAGAAAATTACCTGACAGGCTAGTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGGTGTCACCTCTGAGAAGAAAATTACCTGACAGGCTAGTGGGG  750

seq1  CACTTATTTCCATGGAAAGAATATCCTTTGGAGCACTAATTTTTTACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTCCATGGAAAGAATATCCTTTGGAGCACTAATTTTTTACCTC  800

seq1  TCCTCAGGTGGTTTATTTGATTTCTTTATTCAAACAACAGTAACAATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGTGGTTTATTTGATTTCTTTATTCAAACAACAGTAACAATAAC  850

seq1  AGTTTCACTAGTTTCAGTGGTAGGTTTTCTGTTTTCTATGTACAAGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTAGTTTCAGTGGTAGGTTTTCTGTTTTCTATGTACAAGGGTC  900

seq1  GGGGCTGAGTAGACTGGGGGTCAATTTACAACTGGTATAATTATTTAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGTAGACTGGGGGTCAATTTACAACTGGTATAATTATTTAGTA  950

seq1  GCTAGAGTTTTCTAGTGCTCAAGTCTCTTTGGGGTTCCAGTGTTCGGATC  1000
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GCTAGAGTTTTCTAGTGCTCAAGTCTC-TTGGGGTT-CAGTGTTCGGATC  998

seq1  AGTATATTCTGTCTGAAATGGACCGCCATGTTTCCCGATCATTATTTCTC  1050
      ||||||||||||||||||| |||   ||||||||||||||||||||||| 
seq2  AGTATATTCTGTCTGAAAT-GAC--GCATGTTTCCCGATCATTATTTCTT  1045

seq1  TTCATTTACTTTCTCTCTTCCTGAAATTTGTTGAGATCTTCTCCAACCAA  1100
       |||||||||||| ||  |||||||| ||||||||||||||||||  |||
seq2  CTCATTTACTTTC-CTTCTCCTGAAA-TTGTTGAGATCTTCTCCA--CAA  1091

seq1  ATGCTTTTAGTCTCCTTTGC-TGAGAGGTCTCAGTTTTCTTTTGTATTCC  1149
      ||||||||||||||  |||| ||| |||||||||  |||||||| ||| |
seq2  ATGCTTTTAGTCTC--TTGCTTGAAAGGTCTCAG--TTCTTTTG-ATT-C  1135

seq1  TGGACTTCAGTTTCAGTGGGGCCTGGGAAAGGAG  1183
      | ||| |||  ||||||||||| ||||| |||||
seq2  TTGAC-TCAAGTTCAGTGGGGCTTGGGAGAGGAG  1168

seq1: chr6_42766354_42767513
seq2: B6Ng01-117J06.g_66_1201 (reverse)

seq1  ACTAATTGAGTTCCAATTTCAGTTGCTCTTTCCTTTGCTGTGCAGAACCT  50
      |||||||||||  ||   ||||| ||||||  | ||||   |||||||||
seq2  ACTAATTGAGT--CA---TCAGTGGCTCTT--CCTTGCGTGGCAGAACCT  43

seq1  AAATAAGCTTCTAAATTAAACTATCCAACAAGTGACACTATTACCTTTTT  100
      ||||||||||||||    |||||||  ||||||||||||| |||||||||
seq2  AAATAAGCTTCTAA---TAACTATC--ACAAGTGACACTA-TACCTTTTT  87

seq1  GTTTGTTTTTCTTGCAGTATTTTTAGACAGGATCTTATATTGTACCCCAA  150
      | ||||||||| ||||||| ||||||||| |||||||||||||||||| |
seq2  G-TTGTTTTTC-TGCAGTA-TTTTAGACAAGATCTTATATTGTACCCC-A  133

seq1  GATGCCTGGGACTCATCAAACAACCAAGGCGGGGTGTAGTTCATGGAAAT  200
      ||||||| ||||||||||||||| |||||| |||||||||||||||||||
seq2  GATGCCT-GGACTCATCAAACAA-CAAGGC-GGGTGTAGTTCATGGAAAT  180

seq1  CTTTCTTCTATCTCATCCTTCAAAATGTTTATATTATAAGCATGAGCCAT  250
      ||||| |||||||||||  |||||||||||||||||||||||||||||| 
seq2  CTTTC-TCTATCTCATC--TCAAAATGTTTATATTATAAGCATGAGCCA-  226

seq1  CACAGCTGGTAAGAAATATCACTATTATATATGCCTACAGTTAGTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGTAAGAAATATCACTATTATATATGCCTACAGTTAGTGCTGT  276

seq1  ATTTTGTACTCTTCTCTTTTTACTCTTAAGGATGAATCTCTTTTCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACTCTTCTCTTTTTACTCTTAAGGATGAATCTCTTTTCCAGTG  326

seq1  GAAATGCAAGGTGTCACCACTGGGAAAATACTACTATTCAGTAGGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAAGGTGTCACCACTGGGAAAATACTACTATTCAGTAGGAACAT  376

seq1  AACATTATTGTATACTTCATTAAATCTACCTTAAAGGCATATGGGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTGTATACTTCATTAAATCTACCTTAAAGGCATATGGGATTAT  426

seq1  TTTTTGCTATTATGTAACACCAAGTCTTAAATTGACACTTTGAATTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATTATGTAACACCAAGTCTTAAATTGACACTTTGAATTGCAA  476

seq1  TGAAATACCAGTGGTATAATGTGGTTGACCTAGAAGTCCTCTATTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACCAGTGGTATAATGTGGTTGACCTAGAAGTCCTCTATTTGACT  526

seq1  GTAAAACTGTCATTATCATTATTATCCACATAGTAGTTAAATTCTACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTGTCATTATCATTATTATCCACATAGTAGTTAAATTCTACTAA  576

seq1  TTAATTGAAATTATAGCTCCCCAATAAGGTTGTAAAACACTTTTAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAATTATAGCTCCCCAATAAGGTTGTAAAACACTTTTAAACAC  626

seq1  ATACACACACCAAAATTATACAAAATAAGATTAAAATTGCTTAGTGATCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACCAAAATTATACAAAATAAGATTAAAATTGCTTAGTGATCG  676

seq1  AATATATATGAATATCATTCAAAATATTTCATGTTTCATGGATGTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATGAATATCATTCAAAATATTTCATGTTTCATGGATGTATTCT  726

seq1  ACTATGCAGACTTAATATGAGATCTTTACAGGAGAAATTCAGTAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAGACTTAATATGAGATCTTTACAGGAGAAATTCAGTAACAAAA  776

seq1  AGGTTAAATGAAACTGGACATCACCTAGAATTCAGAGACTTACTGTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAATGAAACTGGACATCACCTAGAATTCAGAGACTTACTGTTCAC  826

seq1  AAAACCTTTCTTACTACAAAGAGAGGCACAGTCCCTGAAATACTAAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTTCTTACTACAAAGAGAGGCACAGTCCCTGAAATACTAAGTCA  876

seq1  AATAAGTCTTTGAATCTAAAATTACTTAATTTTCTTGCCATTTAAGGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTTTGAATCTAAAATTACTTAATTTTCTTGCCATTTAAGGTTA  926

seq1  TGTGTTTTGGAGAAGAAATGATGCTCCAACAATTTAAATCTTGAAGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGGAGAAGAAATGATGCTCCAACAATTTAAATCTTGAAGATCT  976

seq1  TACTTCTTTTCTTTTTAATTTCAGAAGCACTATTACATCTTACTGTGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTTTCTTTTTAATTTCAGAAGCACTATTACATCTTACTGTGATC  1026

seq1  ATCTTCAATGTGGATGATCTTGAAATTCAGAAGTGTCAGCTTGCAATACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAATGTGGATGATCTTGAAATTCAGAAGTGTCAGCTTGCAATACC  1076

seq1  TGTCCAGTTGTGAAATTCATGGGCCAGGAATTTATCAACCAGACTTGGGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTTGTGAAATTCATGGGCCAGGAATTTATCAACCAGACTTGGGT  1126

seq1  GAATGAATTC  1160
      ||||||||||
seq2  GAATGAATTC  1136