BAC Information

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BAC

Clone NameB6Ng01-117L21
Chromosome6 (Build37)10 (Build37)
Map Location 47,450,899 - 47,452,019104,054,158 - 104,054,266
singlet/doubletsingletsinglet
Overlap geneCul1
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik
Downstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L21.bB6Ng01-117L21.g
ACCDH922403DH922404
length1,102200
definitionDH922403|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L21, 5' end.DH922404|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,450,899 - 47,452,019)(104,054,158 - 104,054,266)
sequence
gaattcatttatagatagaatctatgctggtttttaagctgatacaaatg
tcagccttaacagcattttctttctgaactttgttgttaaattgtgagaa
ggtaaacatctatacaaagtgattaacttaagagagcagctctgacttca
ttgtgatattatgtttttactaagttatctaaagattttggtaaaataaa
gaattcaggttattgtctgtgacaagtttcaaggatattcaatacatctt
ttcccctttttcatccagcttgcattggtgacatggagagattgtttgtt
caggccattgaataaacaggtatctactatgggatatgtgtgtgtttcct
taaaaaaaaaaaaagctttccattttgatcttgtctcctcaagccttttg
actatctcaagagtatttgttgggcttagtctgtaaagtgcttgctatgt
aagcatgaggacatggggtagatccccagtgccacgtatagtgcgtatag
tgatgcccactagtgatcctagcactgcaaaggtagggtcaggtagatcc
ttagtgcttcctgaccagggccaagcttgccacctgaatgagctccatgc
cagtgagagactgtcttaaagacacagtgaattcttcctggcaaacagtt
cttgaaggtgcccttggtctatgtctacacatgcatgtacccatccccct
aaaatatttgttactttgtattatttagtggctttaaatgtttaaaggat
atataagatacattgtgagctataatataccttttgtgtgttcttaaagg
taacaaatgctgttttaaagttgattgaaaaggaaagaaatggagaaacc
atcaatacaagactgattagtggagttgtacaatcttatggtaaataatt
tgcctttattataatagtgctctaatattcattttaaaatatttattaaa
gattctcagaatgtagttcatctttagtacttttaaatagtaatttacaa
tcgtaaaaaatatttatctttgtactttaagaattttgtgaaaaatttat
tataatttcttttgctgttcatgagattactaaataatatgttttgagct
aa
atctcaacagcattatctcaagaggattcctcctcaggtcgatccgcaag
cctctggcccatcagagcaggggtggggtggggtggggtgggattccacc
tcatacctttcataatggctaagatcaaaaattcaggtgacagcagatgc
tggcgtggatgtggagaaagatgaacactcctcccttgttggtgggattg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47450899_47452019
seq2: B6Ng01-117L21.b_49_1150

seq1  GAATTCATTTATAGATAGAATCTATGCTGGTTTTTAAGCTGATACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAGATAGAATCTATGCTGGTTTTTAAGCTGATACAAATG  50

seq1  TCAGCCTTAACAGCATTTTCTTTCTGAACTTTGTTGTTAAATTGTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTAACAGCATTTTCTTTCTGAACTTTGTTGTTAAATTGTGAGAA  100

seq1  GGTAAACATCTATACAAAGTGATTAACTTAAGAGAGCAGCTCTGACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACATCTATACAAAGTGATTAACTTAAGAGAGCAGCTCTGACTTCA  150

seq1  TTGTGATATTATGTTTTTACTAAGTTATCTAAAGATTTTGGTAAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATATTATGTTTTTACTAAGTTATCTAAAGATTTTGGTAAAATAAA  200

seq1  GAATTCAGGTTATTGTCTGTGACAAGTTTCAAGGATATTCAATACATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTATTGTCTGTGACAAGTTTCAAGGATATTCAATACATCTT  250

seq1  TTCCCCTTTTTCATCCAGCTTGCATTGGTGACATGGAGAGATTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTTTCATCCAGCTTGCATTGGTGACATGGAGAGATTGTTTGTT  300

seq1  CAGGCCATTGAATAAACAGGTATCTACTATGGGATATGTGTGTGTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATTGAATAAACAGGTATCTACTATGGGATATGTGTGTGTTTCCT  350

seq1  TAAAAAAAAAAAAAGCTTTCCATTTTGATCTTGTCTCCTCAAGCCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAGCTTTCCATTTTGATCTTGTCTCCTCAAGCCTTTTG  400

seq1  ACTATCTCAAGAGTATTTGTTGGGCTTAGTCTGTAAAGTGCTTGCTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCAAGAGTATTTGTTGGGCTTAGTCTGTAAAGTGCTTGCTATGT  450

seq1  AAGCATGAGGACATGGGGTAGATCCCCAGTGCCACGTATAGTGCGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAGGACATGGGGTAGATCCCCAGTGCCACGTATAGTGCGTATAG  500

seq1  TGATGCCCACTAGTGATCCTAGCACTGCAAAGGTAGGGTCAGGTAGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCACTAGTGATCCTAGCACTGCAAAGGTAGGGTCAGGTAGATCC  550

seq1  TTAGTGCTTCCTGACCAGGGCCAAGCTTGCCACCTGAATGAGCTCCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTTCCTGACCAGGGCCAAGCTTGCCACCTGAATGAGCTCCATGC  600

seq1  CAGTGAGAGACTGTCTTAAAGACACAGTGAATTCTTCCTGGCAAACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGACTGTCTTAAAGACACAGTGAATTCTTCCTGGCAAACAGTT  650

seq1  CTTGAAGGTGCCCTTGGTCTATGTCTACACATGCATGTACCCATCCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTGCCCTTGGTCTATGTCTACACATGCATGTACCCATCCCCCT  700

seq1  AAAATATTTGTTACTTTGTATTATTTAGTGGCTTTAAATGTTTAAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGTTACTTTGTATTATTTAGTGGCTTTAAATGTTTAAAGGAT  750

seq1  ATATAAGATACATTGTGAGCTATAATATACCTTTTGTGTGTTCTTAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATACATTGTGAGCTATAATATACCTTTTGTGTGTTCTTAAAGG  800

seq1  TAACAAATGCTGTTTTAAAGTTGATTGAAAAGGAAAGAAATGGAGAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGCTGTTTTAAAGTTGATTGAAAAGGAAAGAAATGGAGAAACC  850

seq1  ATCAATACAAGACTGATTAGTGGAGTTGTACAATCTTATGGTAAATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACAAGACTGATTAGTGGAGTTGTACAATCTTATGGTAAATAATT  900

seq1  TGCCTTTATTATAATAGTGCTCTAATATTCATTTTAAAATATTTATTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTATTATAATAGTGCTCTAATATTCATTTTAAAATATTTATTAAA  950

seq1  GATTCTCAGGAATGTTAGTTCATCTTTAAGGTACTTTTAAATAGTAATTT  1000
      |||||||| ||||| |||||||||||||  ||||||||||||||||| ||
seq2  GATTCTCA-GAATG-TAGTTCATCTTTA--GTACTTTTAAATAGTAA-TT  995

seq1  TACAAATCGTAAAAAATATTTAATCTTTGTACTTTAAGGAAATTTTGTGA  1050
      ||| ||||||||||||||||| ||||||||||||||||  ||||||||||
seq2  TAC-AATCGTAAAAAATATTT-ATCTTTGTACTTTAAG--AATTTTGTGA  1041

seq1  AAAAAATTTAATTAT-ATTTCTTTTGCTGTTTTCATGAGGAATTACTAAT  1099
      ||||   || ||||| |||||||||||||  ||||||||  |||||||| 
seq2  AAAA---TTTATTATAATTTCTTTTGCTG--TTCATGAG--ATTACTAA-  1083

seq1  ATATAATTGTTTTTTGAGCTAA  1121
        |||| | | |||||||||||
seq2  --ATAA-TATGTTTTGAGCTAA  1102

seq1: chr10_104054158_104054266
seq2: B6Ng01-117L21.g_163_271 (reverse)

seq1  CAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA  50
      ||||||||||||||| |||||||||||| ||||||||||||||| |||||
seq2  CAATCCCACCAACAAGGGAGGAGTGTTCATCTTTCTCCACATCCACGCCA  50

seq1  GCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGA  100
      ||||||||||||||||||||||||||||||||||||| |||  ||| |||
seq2  GCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTATGAAAGGTATGA  100

seq1  GGTGGAATC  109
      |||||||||
seq2  GGTGGAATC  109