BAC Information

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BAC

Clone NameB6Ng01-117M09
Chromosome6 (Build37)
Map Location 58,131,691 - 58,132,456
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893
Downstream geneLOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M09.bB6Ng01-117M09.g
ACCDH922426DH922427
length1,036701
definitionDH922426|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M09, 5' end.DH922427|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtccaacctgcctccctgccctgtacccctatcccactttac
cctcccttcctccctttgagaaagactatgtaggtaattttgaattttag
taaacaaagttaaaattcttttacaataaagtttacattattagtttatt
aatacaacaactcttataaacacattcaaatatttgtccattaaaacaaa
ttttacaagtttaactcaggaggagttttctaagtagtgttgacataaaa
actacagctcttgggtggctgtagaaatggctcagcggagcatcggcggg
agccatcttggttccgggactccgcccaaagtggtctgcacaggtgagag
tgtggactacagaagctaacagattctgtgacaggacaaacaacacagct
tctgggaaacatcctgttttggggcttaatcttcagccagtagggaggta
tgaacttcagatatctgttcaccttccctgtaagagtagagcttgcctgc
agagagtgctcttaccactgaaactcagaggagagagctagtctcccagg
tctgctgatagaggctaacagaatcaccagaggaacaatctctaaccaga
gacaactataacaactaactccagagattagcagatggcaaaaggtaaac
ttaagaatcttactaacagaaaccaaaaccactcaccgtcatcagaaccc
tgccctcccactttgtccagtccagggcaccccaacacacccgaaaagct
agacctggatttaaaagcatatctcatgacaatggtagagggcatcaaga
aggactttaataactcatttaaagaaatacaggagaacactgctaaatag
gtagaagacctcaaagaggaagcacaaaaatcccttaaagaattgcagga
aaacacaaacaaacaggtgatggaattgaataaaaccgttcaagaccgaa
aaggaaatagactcgataaagaaactcaaagtgagcaacgctagtgattg
aaaccctagaagaaatctggaaccatagatgcgagc
gaattctttggaaaaggtggtagaaagactagaataagctagaatgaata
gaaagcatcaaggaaacaaatccttataaatatattaaaatggacatgca
tacaaactcagagactgtgacaacgtgcacaggaactgtttagggtgtgc
ctgtggtgtcctagagtagaactgatacacaccccctccataatcaaaca
tctgtctgcctttgaagcaatttgcaaataaaaaataacttttcttcata
gtagtctcactggagaaacaaactactcttaagggtaggctctatgcctg
acagtagatggacaacacaaaacagtcttaatggagtctttagtgagcct
ttgcctatatactttgaattctgtttttgtatttttatgagatctctgtg
tgagaacttgtgtgtctgtctgtttgttgtgttttgctttggcacatttt
tcttctgtgtgttttctcctattctaatttatttattttcttttatctta
taatttattttacttttatttcttagaggcctgcttattttctaaagaga
gaaagaaatgttagtttggatggggtaggaggtgaggaggaactataagg
aacggcagaagggagaaacactaaacactttatagtatatgaattgtttt
ctcataaaagaacagaacaatttttatatgggggggggtatgggtggttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58131691_58132456
seq2: B6Ng01-117M09.b_48_813

seq1  GAATTCCTGTCCAACCTGCCTCCCTGCCCTGTACCCCTATCCCACTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCAACCTGCCTCCCTGCCCTGTACCCCTATCCCACTTTAC  50

seq1  CCTCCCTTCCTCCCTTTGAGAAAGACTATGTAGGTAATTTTGAATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCCTTTGAGAAAGACTATGTAGGTAATTTTGAATTTTAG  100

seq1  TAAACAAAGTTAAAATTCTTTTACAATAAAGTTTACATTATTAGTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGTTAAAATTCTTTTACAATAAAGTTTACATTATTAGTTTATT  150

seq1  AATACAACAACTCTTATAAACACATTCAAATATTTGTCCATTAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACAACTCTTATAAACACATTCAAATATTTGTCCATTAAAACAAA  200

seq1  TTTTACAAGTTTAACTCAGGAGGAGTTTTCTAAGTAGTGTTGACATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAGTTTAACTCAGGAGGAGTTTTCTAAGTAGTGTTGACATAAAA  250

seq1  ACTACAGCTCTTGGGTGGCTGTAGAAATGGCTCAGCGGAGCATCGGCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCTCTTGGGTGGCTGTAGAAATGGCTCAGCGGAGCATCGGCGGG  300

seq1  AGCCATCTTGGTTCCGGGACTCCGCCCAAAGTGGTCTGCACAGGTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTGGTTCCGGGACTCCGCCCAAAGTGGTCTGCACAGGTGAGAG  350

seq1  TGTGGACTACAGAAGCTAACAGATTCTGTGACAGGACAAACAACACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTACAGAAGCTAACAGATTCTGTGACAGGACAAACAACACAGCT  400

seq1  TCTGGGAAACATCCTGTTTTGGGGCTTAATCTTCAGCCAGTAGGGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAACATCCTGTTTTGGGGCTTAATCTTCAGCCAGTAGGGAGGTA  450

seq1  TGAACTTCAGATATCTGTTCACCTTCCCTGTAAGAGTAGAGCTTGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCAGATATCTGTTCACCTTCCCTGTAAGAGTAGAGCTTGCCTGC  500

seq1  AGAGAGTGCTCTTACCACTGAAACTCAGAGGAGAGAGCTAGTCTCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCTCTTACCACTGAAACTCAGAGGAGAGAGCTAGTCTCCCAGG  550

seq1  TCTGCTGATAGAGGCTAACAGAATCACCAGAGGAACAATCTCTAACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATAGAGGCTAACAGAATCACCAGAGGAACAATCTCTAACCAGA  600

seq1  GACAACTATAACAACTAACTCCAGAGATTAGCAGATGGCAAAAGGTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTATAACAACTAACTCCAGAGATTAGCAGATGGCAAAAGGTAAAC  650

seq1  TTAAGAATCTTACTAACAGAAACCAAAACCACTCACCGTCATCAGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATCTTACTAACAGAAACCAAAACCACTCACCGTCATCAGAACCC  700

seq1  TGCCCTCCCACTTTGTCCAGTCCAGGGCACCCCAACACACCCGAAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCACTTTGTCCAGTCCAGGGCACCCCAACACACCCGAAAAGCT  750

seq1  AGACCTGGATTTAAAA  766
      ||||||||||||||||
seq2  AGACCTGGATTTAAAA  766