BAC Information

Click to search

BAC

Clone NameB6Ng01-118J17
Chromosome6 (Build37)
Map Location 122,608,224 - 122,737,425
singlet/doubletdoublet
Overlap geneLOC100043805, Nanog, LOC100038891, Slc2a3
Upstream geneA2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107
Downstream geneLOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118J17.bB6Ng01-118J17.g
ACCDH923039DH923040
length1,20181
definitionDH923039|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J17, 5' end.DH923040|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,608,224 - 122,609,433)(122,737,345 - 122,737,425)
sequence
gaattcctagggggctggcaccgtcgcccctgaacccaaggaatccattg
ttaactttctgggaaatatctgtatgttattccatcctcagttttgtaat
aaaaatgttctgtttttattatacagaattgagactaagactgggggaac
agctgcagatttactcatctctgcccgcggctctaggttcttttcatttc
cacctcgagtaagtgaccttaagcgtacatttctcttgaattcatgaaca
gctttcactttgatattattggtgacatctagttcctggatatcaagcgg
gctcctactaggtcttgccaggtcaccaaataccagtttagtcaaggaag
gaggaaagaaaaggaacattgaatagataaggagaatggtaagcactaag
aatagttgcagaaatgacatcatgaggtgcttgcacccaagaagcagacc
ttgggacctctcagtactcacactggggcccacaggaggccactgccttg
tgctctgaagcatggtacccccggcagagttgtctttcttgtcatcatgg
gtctcaggcatcttgagcttaacttgaggtatctccaacaactgtgactc
tgccactgtattggattatacagatttaaagctccgtagtaatttttatt
ggcttcagtttaagttacatgacatgtttgttatcaggcaattcattata
gcagtataggtgtgggcttaaagcgtggcagaggccacagaggagctagt
ggtagtgtggaaagctggtagcacatgggtcgtagatgttgaacaatggg
gaaggtggaaaccatgggagagaaaatgtacatttggcttagatggaagg
aggtgccagtcacagataatgaagacaaggcatattgtgagcacctgtga
tggtttgtatattcttggaccagggattggcaccatctggagtgtggcct
tgatggaatagtgtgacctgtttggatagtatgtcactgtggatgtgggc
ttaagactctcacctccagttgcctgagtcagtcttccacctagccgcct
ttggatgaagaatgtagaacctcctcagttctgcctgcgcccatgcctgc
cttgaaactgccatgcttcccacctgatgaaatgaactgacccctagact
tgtagccacgccaattagtcgcttgttaagacctggcttggtcatggtgt
c
ttgctttgatcctcaggaaggaactgtgtattttagggattttttgttgt
tgtttttgtttttggggggggtttgttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_122608224_122609433
seq2: B6Ng01-118J17.b_43_1243

seq1  GAATTCCTAGGGGGCTGGCACCGTCGCCCCTGAACCCAAGGAATCCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGGGGCTGGCACCGTCGCCCCTGAACCCAAGGAATCCATTG  50

seq1  TTAACTTTCTGGGAAATATCTGTATGTTATTCCATCCTCAGTTTTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTCTGGGAAATATCTGTATGTTATTCCATCCTCAGTTTTGTAAT  100

seq1  AAAAATGTTCTGTTTTTATTATACAGAATTGAGACTAAGACTGGGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTCTGTTTTTATTATACAGAATTGAGACTAAGACTGGGGGAAC  150

seq1  AGCTGCAGATTTACTCATCTCTGCCCGCGGCTCTAGGTTCTTTTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGATTTACTCATCTCTGCCCGCGGCTCTAGGTTCTTTTCATTTC  200

seq1  CACCTCGAGTAAGTGACCTTAAGCGTACATTTCTCTTGAATTCATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCGAGTAAGTGACCTTAAGCGTACATTTCTCTTGAATTCATGAACA  250

seq1  GCTTTCACTTTGATATTATTGGTGACATCTAGTTCCTGGATATCAAGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACTTTGATATTATTGGTGACATCTAGTTCCTGGATATCAAGCGG  300

seq1  GCTCCTACTAGGTCTTGCCAGGTCACCAAATACCAGTTTAGTCAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTACTAGGTCTTGCCAGGTCACCAAATACCAGTTTAGTCAAGGAAG  350

seq1  GAGGAAAGAAAAGGAACATTGAATAGATAAGGAGAATGGTAAGCACTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGAAAAGGAACATTGAATAGATAAGGAGAATGGTAAGCACTAAG  400

seq1  AATAGTTGCAGAAATGACATCATGAGGTGCTTGCACCCAAGAAGCAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGCAGAAATGACATCATGAGGTGCTTGCACCCAAGAAGCAGACC  450

seq1  TTGGGACCTCTCAGTACTCACACTGGGGCCCACAGGAGGCCACTGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCTCTCAGTACTCACACTGGGGCCCACAGGAGGCCACTGCCTTG  500

seq1  TGCTCTGAAGCATGGTACCCCCGGCAGAGTTGTCTTTCTTGTCATCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAGCATGGTACCCCCGGCAGAGTTGTCTTTCTTGTCATCATGG  550

seq1  GTCTCAGGCATCTTGAGCTTAACTTGAGGTATCTCCAACAACTGTGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGCATCTTGAGCTTAACTTGAGGTATCTCCAACAACTGTGACTC  600

seq1  TGCCACTGTATTGGATTATACAGATTTAAAGCTCCGTAGTAATTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGTATTGGATTATACAGATTTAAAGCTCCGTAGTAATTTTTATT  650

seq1  GGCTTCAGTTTAAGTTACATGACATGTTTGTTATCAGGCAATTCATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGTTTAAGTTACATGACATGTTTGTTATCAGGCAATTCATTATA  700

seq1  GCAGTATAGGTGTGGGCTTAAAGCGTGGCAGAGGCCACAGAGGAGCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATAGGTGTGGGCTTAAAGCGTGGCAGAGGCCACAGAGGAGCTAGT  750

seq1  GGTAGTGTGGAAAGCTGGTAGCACATGGGTCGTAGATGTTGAACAATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTGGAAAGCTGGTAGCACATGGGTCGTAGATGTTGAACAATGGG  800

seq1  GAAGGTGGAAACCATGGGAGAGAAAATGTACATTTGGCTTAGATGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGAAACCATGGGAGAGAAAATGTACATTTGGCTTAGATGGAAGG  850

seq1  AGGTGCCAGTCACAGATAATGAAGACAAGGCATATTGTGAGCACCTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAGTCACAGATAATGAAGACAAGGCATATTGTGAGCACCTGTGA  900

seq1  TGGTTTGTATATTCTTGGACCAGGGATTGGCACCATCTGGAGGTGTGGCC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGTTTGTATATTCTTGGACCAGGGATTGGCACCATCTGGA-GTGTGGCC  949

seq1  TTGATGGAATAGGTGTGACCTGGTTGGAATAGGTATGTCACTGTGGATGT  1000
      ||||||||||| |||||||||| |||| ||| ||||||||||||||||||
seq2  TTGATGGAATA-GTGTGACCTGTTTGG-ATA-GTATGTCACTGTGGATGT  996

seq1  GGGCTTAAGACTCTCA-CTCCAGTTGCCTGGAAGTCAGTCTTCCA-CTAG  1048
      |||||||||||||||| |||||||||||||  ||||||||||||| ||||
seq2  GGGCTTAAGACTCTCACCTCCAGTTGCCTG--AGTCAGTCTTCCACCTAG  1044

seq1  CCGCCTTTGGATGAAG-ATGTAGAAC--TCTCAGTTCTGCCTGCG-CCAT  1094
      |||||||||||||||| |||||||||   |||||||||||||||| ||||
seq2  CCGCCTTTGGATGAAGAATGTAGAACCTCCTCAGTTCTGCCTGCGCCCAT  1094

seq1  GCCTGCCTGGATACTGCCATGC-TCCCACCTTGATGAAAATGGACTGAAC  1143
      |||||||| || |||||||||| ||||||| ||||| ||||| |||| ||
seq2  GCCTGCCTTGAAACTGCCATGCTTCCCACC-TGATG-AAATGAACTG-AC  1141

seq1  CTCTAGACTTGTAAGCCAGCCCCAATTAAATGTTGTTTTGTATAAGACTT  1193
      | |||||||||| ||||| | |||||||   || |  |||| |||||| |
seq2  CCCTAGACTTGT-AGCCA-CGCCAATTA---GTCG-CTTGT-TAAGACCT  1184

seq1  GCCTTGGTCATGGTGTC  1210
      | |||||||||||||||
seq2  GGCTTGGTCATGGTGTC  1201

seq1: chr6_122737345_122737425
seq2: B6Ng01-118J17.g_74_154 (reverse)

seq1  CAACAACAAACCCCCCCCAAAAACAAAAACAACAACAAAAAATCCCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAACCCCCCCCAAAAACAAAAACAACAACAAAAAATCCCTAAA  50

seq1  ATACACAGTTCCTTCCTGAGGATCAAAGCAA  81
      |||||||||||||||||||||||||||||||
seq2  ATACACAGTTCCTTCCTGAGGATCAAAGCAA  81