BAC Information

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BAC

Clone NameB6Ng01-119D18
Chromosome6 (Build37)
Map Location 90,074,940 - 90,262,585
singlet/doubletdoublet
Overlap geneV1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13
Upstream geneGm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1
Downstream geneUroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119D18.bB6Ng01-119D18.g
ACCDH923503DH923504
length1,2501,087
definitionDH923503|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D18, 5' end.DH923504|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,074,940 - 90,076,196)(90,261,490 - 90,262,585)
sequence
gaattccacctccagaaagataaggtttcccagtgctttcaaagccagaa
tccgtgaagccatgatattgagaatatcactgaggagtcacaatctctgt
gcctgcctgactttccgaagagcttcaggtttgcagggctgaggtttctg
aagtgaccctgacactaacacagcctgcactggctctgcagagctgacag
tgcactgcctgggtggtctaataaggagatatgttcataaagatcaagtt
ccttttagtttctttcctctcttctttgttcctgcttcttgtttcctttc
ttcttttatttactcttctcttttctgattatctcaatgtagtaatataa
aatgcacatttccaggaacaacgtgagagaaagcagtttggaattctcat
gcctcttagctagtgccatcgtgcatatgatgccagctactactttaaac
tctacagttgtgctttccttccatgaaatgaagtgcataaaacattcacc
tgtagctcactgcacacagatcacaaaaagaaatatagagtatgtgctca
tggtggcatttgttccataaaacaattgccattttccttgatcattgaga
aagagaagtatgtctttctgcaccatactatgttctgattcttgccaact
gggatttggaaaacaaacccataagttttataaagaacttcacagtacaa
atgaattaattaagcaccatctattttatatatatgtgtgtgtacatatg
tataatatatgtttatatgacctatttaattttatatagggttaaccttt
tctaaagatgctacacaatttttatttcagcaaatcaactctgttcaatg
tttataccaactaactgactcaggtctaatgccttaaccagtaccctgta
cttatgaattttatcccctttacctttcagtaataacttccattaaaata
tctcatgttctaaattagtataaaattatttcactcacacccttgacttc
cagtgataaatttactctgtacagatttgtttacaaattacatgacctat
tttgggggggtgtctgtgcttacatagttcatgataacttgacacaagct
agaagttatttttagagaagggatctcactgaaaaaattagccacatact
gccatgggcagcacttgttatattattgattgatatgaccttgatgggga
gattccagaataccatgtggacatttcacacacctgtaaccgtggtggtc

gaattcttttaagggcttcaaaaacacatgtgtacatgtggacacacacc
acatgctcccatgccacctgtgtccatgatttcatgctggggctggggct
ccaccatttctgcttctgctgtggcctctgagctgaaaaatagtcggaaa
taactcaacataaatttactcttttgatatggttgatttagtggttttca
tattttacaatgtagtcaggaaaaaaaggggggctgggtgggaatcatac
aatggttgaccttttaggcctggcttctttcccccagcataatgctctca
aggtcaatctgtgttgtcatatttatcatacattcattcataatggctga
ctaatattgttatggatataccatatactgtttattgatttgtcagatga
tggacttttaggctgtttccactttttcccaataggaataatgaacattc
atgtacaagtttctatgtgcatttgcttttagatgtttggcagctgtgag
ctatgggtagtcagtggggagcggcagaaagtggtatcccacggtgttat
agtccttactcaggccatatactatagtatatagactataggctatattg
agtatatagactatatactatagtatatatattatatactgaagtatggg
tttttttagtgctactgctgctcctatgtcagtgcagagtcagaattcct
taacccttcacatgagctaacatcaaaatgcttaggcttacgtctgagag
aatgggccctaaagacctggcagccttctataactttctagcaagcaaga
cacacactttccccatctctggcactctaatccttctctccttcttcaac
cccagctcttcaccctctctctggtctttccttgcccttcttctgccctg
gccattctcaaagtttagctgcctggcaactggctacttgcccttcagct
caggtgcagcagttgccctccctcctctgagctgcctctcctgcctctcc
tgctatcatctcagccacaatacaaaggaagcaagaaaagatcttctata
gaaggactcatgctgcaatagatgaacatgcagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90074940_90076196
seq2: B6Ng01-119D18.b_47_1296

seq1  GAATTCCACCTCCAGAAAGATAAGGTTTCCCAGTGCTTTCAAAGCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTCCAGAAAGATAAGGTTTCCCAGTGCTTTCAAAGCCAGAA  50

seq1  TCCGTGAAGCCATGATATTGAGAATATCACTGAGGAGTCACAATCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAAGCCATGATATTGAGAATATCACTGAGGAGTCACAATCTCTGT  100

seq1  GCCTGCCTGACTTTCCGAAGAGCTTCAGGTTTGCAGGGCTGAGGTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGACTTTCCGAAGAGCTTCAGGTTTGCAGGGCTGAGGTTTCTG  150

seq1  AAGTGACCCTGACACTAACACAGCCTGCACTGGCTCTGCAGAGCTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCCTGACACTAACACAGCCTGCACTGGCTCTGCAGAGCTGACAG  200

seq1  TGCACTGCCTGGGTGGTCTAATAAGGAGATATGTTCATAAAGATCAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCCTGGGTGGTCTAATAAGGAGATATGTTCATAAAGATCAAGTT  250

seq1  CCTTTTAGTTTCTTTCCTCTCTTCTTTGTTCCTGCTTCTTGTTTCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAGTTTCTTTCCTCTCTTCTTTGTTCCTGCTTCTTGTTTCCTTTC  300

seq1  TTCTTTTATTTACTCTTCTCTTTTCTGATTATCTCAATGTAGTAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTACTCTTCTCTTTTCTGATTATCTCAATGTAGTAATATAA  350

seq1  AATGCACATTTCCAGGAACAACGTGAGAGAAAGCAGTTTGGAATTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATTTCCAGGAACAACGTGAGAGAAAGCAGTTTGGAATTCTCAT  400

seq1  GCCTCTTAGCTAGTGCCATCGTGCATATGATGCCAGCTACTACTTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTAGCTAGTGCCATCGTGCATATGATGCCAGCTACTACTTTAAAC  450

seq1  TCTACAGTTGTGCTTTCCTTCCATGAAATGAAGTGCATAAAACATTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTTGTGCTTTCCTTCCATGAAATGAAGTGCATAAAACATTCACC  500

seq1  TGTAGCTCACTGCACACAGATCACAAAAAGAAATATAGAGTATGTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCACTGCACACAGATCACAAAAAGAAATATAGAGTATGTGCTCA  550

seq1  TGGTGGCATTTGTTCCATAAAACAATTGCCATTTTCCTTGATCATTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCATTTGTTCCATAAAACAATTGCCATTTTCCTTGATCATTGAGA  600

seq1  AAGAGAAGTATGTCTTTCTGCACCATACTATGTTCTGATTCTTGCCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTATGTCTTTCTGCACCATACTATGTTCTGATTCTTGCCAACT  650

seq1  GGGATTTGGAAAACAAACCCATAAGTTTTATAAAGAACTTCACAGTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGGAAAACAAACCCATAAGTTTTATAAAGAACTTCACAGTACAA  700

seq1  ATGAATTAATTAAGCACCATCTATTTTATATATATGTGTGTGTACATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAATTAAGCACCATCTATTTTATATATATGTGTGTGTACATATG  750

seq1  TATAATATATGTTTATATGACCTATTTAATTTTATATAGGGTTAACCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATGTTTATATGACCTATTTAATTTTATATAGGGTTAACCTTT  800

seq1  TCTAAAGATGCTACACAATTTTTATTTCAGCAAATCAACTCTGTTCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGATGCTACACAATTTTTATTTCAGCAAATCAACTCTGTTCAATG  850

seq1  TTTATACCAACTAACTGACTCAGGTCTAATGCCTTAACCAGTACCCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAACTAACTGACTCAGGTCTAATGCCTTAACCAGTACCCTGTA  900

seq1  CTTATGAATTTTATCCCCTTTACCTTTCAGTAATAACTTCCATTAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAATTTTATCCCCTTTACCTTTCAGTAATAACTTCCATTAAAATA  950

seq1  TCTCATGTTCTAAATTAGTATAAAATTATTTCACTCACACCCTTGACTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTCTAAATTAGTATAAAATTATTTCACTCACACCCTTGACTTC  1000

seq1  CAGTGATAAATTTTTACTCTGTAACAGGAATTTGTTTACAAAATTACATG  1050
      ||||||||||  |||||||||| ||||  |||||||||| ||||||||||
seq2  CAGTGATAAA--TTTACTCTGT-ACAG--ATTTGTTTAC-AAATTACATG  1044

seq1  ACCTATAT--GGGGGGTGTCTGTGC-TACATAGTTTCATGATAACTTGAC  1097
      |||||| |  ||||||||||||||| ||||||| ||||||||||||||||
seq2  ACCTATTTTGGGGGGGTGTCTGTGCTTACATAG-TTCATGATAACTTGAC  1093

seq1  ACAAGCTAG-AGTTATTTTAGAAGAGGGAATCTCAACTGAGAAAATATAG  1146
      ||||||||| |||||||||   ||| || ||||| ||||| ||||| |||
seq2  ACAAGCTAGAAGTTATTTTTAGAGAAGGGATCTC-ACTGAAAAAAT-TAG  1141

seq1  CCACCATACTGGCCCATGGGCAAGCACCTTGTGTATATTATTGATTGATG  1196
      ||| |||||||  |||||||| |||| ||||| |||||||||||||||| 
seq2  CCA-CATACTG--CCATGGGC-AGCA-CTTGT-TATATTATTGATTGAT-  1184

seq1  ATTGACTTGATATGGGAGGGCCCAGATCAC--TGTGGACATTTC-CACAC  1243
      ||   ||||||  |||||   |||||  ||  |||||||||||| |||||
seq2  ATGACCTTGAT-GGGGAGATTCCAGAATACCATGTGGACATTTCACACAC  1233

seq1  CTGGA---CTGGTGGTC  1257
      ||| |    ||||||||
seq2  CTGTAACCGTGGTGGTC  1250

seq1: chr6_90261490_90262585
seq2: B6Ng01-119D18.g_68_1154 (reverse)

seq1  CCCTCTGCACTGTTCTGCTATTGCAGCATTGGGTCCTTCTATAGAGGGTC  50
      ||||||||| |||||  ||||||||||| || ||||||||||||| | ||
seq2  CCCTCTGCA-TGTTCATCTATTGCAGCA-TGAGTCCTTCTATAGAAGATC  48

seq1  TTTTCTTGCCTCCTTTCTGTATTGTGGGCTGAGATGATAGCAGGGAGAGG  100
      ||||||||| |||||  |||||||| |||||||||||||||| ||||| |
seq2  TTTTCTTGCTTCCTT--TGTATTGT-GGCTGAGATGATAGCA-GGAGA-G  93

seq1  GCAGGAGAGGCAGCTCAGAGGAGGGAGGGCAACTGCTGCACCTGAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGGCAGCTCAGAGGAGGGAGGGCAACTGCTGCACCTGAGCTGA  143

seq1  AGGGCAAGGTAGCCAGTTGCCAGGCAGCTAAACTTTGGAGAATGGCCAGG  200
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  AGGGCAA-GTAGCCAGTTGCCAGGCAGCTAAACTTT-GAGAATGGCCAGG  191

seq1  GCAGGAAGAAGGGCAAGGAAAGACCAGAGAGAGGGTGAAGAGCTGGGGTT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-GAAGAAGGGCAAGGAAAGACCAGAGAGAGGGTGAAGAGCTGGGGTT  240

seq1  GAAGAAGGAGAGAAGGATTAGAGTGCCAGAGATGGGGAAAGTGTGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGAAGGAGAGAAGGATTAGAGTGCCAGAGATGGGGAAAGTGTGTGTCT  290

seq1  TGCTTGCTAGAAAGTTATAGAAGGCTGCCAGGTCTTTAGGGCCCATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTAGAAAGTTATAGAAGGCTGCCAGGTCTTTAGGGCCCATTCTC  340

seq1  TCAGACGTAAGCCTAAGCATTTTGATGTTAGCTCATGTGAAGGGTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGTAAGCCTAAGCATTTTGATGTTAGCTCATGTGAAGGGTTAAGG  390

seq1  AATTCTGACTCTGCACTGACATAGGAGCAGCAGTAGCACT-AAAAAACCC  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTCTGACTCTGCACTGACATAGGAGCAGCAGTAGCACTAAAAAAACCC  440

seq1  ATACTTCAGTATATAATATATATACTATAGTATATAGTCTATATACTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGTATATAATATATATACTATAGTATATAGTCTATATACTCAA  490

seq1  TATAGCCTATAGTCTATATACTATAGTATATGGCCTGAGTAAGGACTATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTATAGTCTATATACTATAGTATATGGCCTGAGTAAGGACTATA  540

seq1  ACACCGTGGGATACCACTTTCTGCCGCTCCCCACTGACTACCCATAGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTGGGATACCACTTTCTGCCGCTCCCCACTGACTACCCATAGCTC  590

seq1  ACAGCTGCCAAACATCTAAAAGCAAATGCACATAGAAACTTGTACATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCAAACATCTAAAAGCAAATGCACATAGAAACTTGTACATGAA  640

seq1  TGTTCATTATTCCTATTGGGAAAAAGTGGAAACAGCCTAAAAGTCCATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTATTCCTATTGGGAAAAAGTGGAAACAGCCTAAAAGTCCATCA  690

seq1  TCTGACAAATCAATAAACAGTATATGGTATATCCATAACAATATTAGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAATCAATAAACAGTATATGGTATATCCATAACAATATTAGTCA  740

seq1  GCCATTATGAATGAATGTATGATAAATATGACAACACAGATTGACCTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGAATGAATGTATGATAAATATGACAACACAGATTGACCTTGA  790

seq1  GAGCATTATGCTGGGGGAAAGAAGCCAGGCCTAAAAGGTCAACCATTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTATGCTGGGGGAAAGAAGCCAGGCCTAAAAGGTCAACCATTGTA  840

seq1  TGATTCCCACCCAGCCCCCCTTTTTTTCCTGACTACATTGTAAAATATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCACCCAGCCCCCCTTTTTTTCCTGACTACATTGTAAAATATGA  890

seq1  AAACCACTAAATCAACCATATCAAAAGAGTAAATTTATGTTGAGTTATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTAAATCAACCATATCAAAAGAGTAAATTTATGTTGAGTTATTT  940

seq1  CCGACTATTTTTCAGCTCAGAGGCCACAGCAGAAGCAGAAATGGTGGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTATTTTTCAGCTCAGAGGCCACAGCAGAAGCAGAAATGGTGGAGC  990

seq1  CCCAGCCCCAGCATGAAATCATGGACACAGGTGGCATGGGAGCATGTGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCAGCATGAAATCATGGACACAGGTGGCATGGGAGCATGTGGT  1040

seq1  GTGTGTCCACATGTACACATGTGTTTTTGAAGCCCTTAAAAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCACATGTACACATGTGTTTTTGAAGCCCTTAAAAGAATTC  1087