BAC Information

Click to search

BAC

Clone NameB6Ng01-119K04
Chromosome6 (Build37)
Map Location 59,484,604 - 59,485,716
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119K04.bB6Ng01-119K04.g
ACCDH923796DH923797
length7001,096
definitionDH923796|Mus musculus domesticus DNA, BAC clone: B6Ng01-119K04, 5' end.DH923797|Mus musculus domesticus DNA, BAC clone: B6Ng01-119K04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttaatttctaaatcttcttatcacacagagactgggcaacaa
gtgtctctctctctctctctctctctctctctctctctctctctctcgcg
ggacgaccaccgcacacacacacacatagaaaaacaaaaaacacacacac
aaagagagatgtgccccctagctcccccgcgattttttgtgcgcgcgaga
gagtgtgagaaaaacacagtaaagacacacacagtatagatataacaaac
gttttttttttctcttgtatatgtagggggagagatctcccaatgtgtgc
cccccccctcctctctgagagggacacgctcttatatatgtgtgtttccc
cctctcagagggggggggggggtgagtgttctgtctctctagccatatac
ataaagagagagagagagacccccaatatcttgtatctctctctttaata
ttatagaaactctttgggtggagagggaattaatagtgacacacatccac
aactgaaagtcacatttgtagcacacatctcagagcaagaatgtagcgaa
aaataaatagctatagagactctaatggtgttggaatacacagaccccac
agctcacccattaatagcaccgtacacatacgctatatactcactttttt
agaaaaatacagagtagagtcgcgatactctgtctctgtatatatgtctt


gaattcacaggaagggacctttgatgaaatgccagacagtagggagaagg
aatatatagagcccatctccagaaggaagacaggacatcaagtgagagat
ggggttgtcatcccacagtcacaactctgacccataattgtttctgtctg
aaagaattacatggatggaaatggaggggaacctgaggaaaaggaggtcc
agtgacaggcccaacgtgggatccagctcaaggggttgttgtcccaaggc
ctgacactattactgaggctatggagtgctcataaaaagggatctatcat
gactgccctctgaaagacccaacaagcagccgaacgagtcagattcagaa
tttgcacccaaccaatggacagaagcagctgacccctgttgttgaattag
ggaaggctgaaagaaccatgtgtccattatgctaggcattagaattaaag
taaatctgaggatgtgcttggatccaatggaaggttttcgaaatgaaagt
attctaccacctgcaggttttagtgtctggagacttgggaagggatcttg
gagccaattccagtggatccagaggaacagctgtactcaaacagctagag
ataaggatttgttgatattgcgtcccactcgaccggcaagaaagaagcaa
caaactggaatcttctgcggcaaaagctttattgcttacttcttcaggag
caagagagagaatggcaaaaccccgtcccttttaaggagaattatcctcc
acttaggacgtgtcgctccctgattggctgcagcccattggccgagttgt
cgtcacagggaaggcagagcacatggagtgaagaactacccctggcacat
gcgcagatatttgtttactacttagacagaggatgtcagcaccatcttgt
aacggcgaatgtgagggcggctcctcacatgttgatatgggcagactcat
gagaatattgtctctacatattgcaaaatgagatagctatggaaatggtg
tgatgtgactttctctattctaaagagaaaggaagcaagaaatgtttacc
acaagacttagagtgctatatagatgaagagaaacagcactgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59484604_59485716
seq2: B6Ng01-119K04.g_69_1164

seq1  GAATTCACAGGAAGGGACCTTTGATGAAATGCCAGACAGTAGGGAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAGGGACCTTTGATGAAATGCCAGACAGTAGGGAGAAGG  50

seq1  AATATATAGAGCCCATCTCCAGAAGGAAGACAGGACATCAAGTGAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGAGCCCATCTCCAGAAGGAAGACAGGACATCAAGTGAGAGAT  100

seq1  GGGGTTGTCATCCCACAGTCACAACTCTGACCCATAATTGTTTCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTCATCCCACAGTCACAACTCTGACCCATAATTGTTTCTGTCTG  150

seq1  AAAGAATTACATGGATGGAAATGGAGGGGAACCTGAGGAAAAGGAGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTACATGGATGGAAATGGAGGGGAACCTGAGGAAAAGGAGGTCC  200

seq1  AGTGACAGGCCCAACGTGGGATCCAGCTCAAGGGGTTGTTGTCCCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGGCCCAACGTGGGATCCAGCTCAAGGGGTTGTTGTCCCAAGGC  250

seq1  CTGACACTATTACTGAGGCTATGGAGTGCTCATAAAAAGGGATCTATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTATTACTGAGGCTATGGAGTGCTCATAAAAAGGGATCTATCAT  300

seq1  GACTGCCCTCTGAAAGACCCAACAAGCAGCCGAACGAGTCAGATTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCTCTGAAAGACCCAACAAGCAGCCGAACGAGTCAGATTCAGAA  350

seq1  TTTGCACCCAACCAATGGACAGAAGCAGCTGACCCCTGTTGTTGAATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCCAACCAATGGACAGAAGCAGCTGACCCCTGTTGTTGAATTAG  400

seq1  GGAAGGCTGAAAGAACCATGTGTCCATTATGCTAGGCATTAGAATTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTGAAAGAACCATGTGTCCATTATGCTAGGCATTAGAATTAAAG  450

seq1  TAAATCTGAGGATGTGCTTGGATCCAATGGAAGGTTTTCGAAATGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGAGGATGTGCTTGGATCCAATGGAAGGTTTTCGAAATGAAAGT  500

seq1  ATTCTACCACCTGCAGGTTTTAGTGTCTGGAGACTTGGGAAGGGATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCACCTGCAGGTTTTAGTGTCTGGAGACTTGGGAAGGGATCTTG  550

seq1  GAGCCAATTCCAGTGGATCCAGAGGAACAGCTGTACTCAAACAGCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATTCCAGTGGATCCAGAGGAACAGCTGTACTCAAACAGCTAGAG  600

seq1  ATAAGGATTTGTTGATATTGCGTCCCACTCGACCGGCAAGAAAGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGATTTGTTGATATTGCGTCCCACTCGACCGGCAAGAAAGAAGCAA  650

seq1  CAAACTGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACTTCTTCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACTTCTTCAGGAG  700

seq1  CAAGAGAGAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCC  750

seq1  ACTTAGGACGTGTCGCTCCCTGATTGGCTGCAGCCCATTGGCCGAGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACGTGTCGCTCCCTGATTGGCTGCAGCCCATTGGCCGAGTTGT  800

seq1  CGTCACAGGGAAGGCAGAGCACATGGAGTGAAGAACTACCCCTGGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACAGGGAAGGCAGAGCACATGGAGTGAAGAACTACCCCTGGCACAT  850

seq1  GCGCAGATTATTTGTTTACTACTTAGAACAGAGGATGTCAGCACCATCTT  900
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  GCGCAGA-TATTTGTTTACTACTTAG-ACAGAGGATGTCAGCACCATCTT  898

seq1  GTAACGGCGAATGTGAGGGCGGCTCCCCACATGTTGATATTGGCAGACTC  950
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  GTAACGGCGAATGTGAGGGCGGCTCCTCACATGTTGATATGGGCAGACTC  948

seq1  ATGAGAATTATGTCTCTACATATTGCAAAATGAGAATAGCTAATGGAAAT  1000
      ||||||||  |||||||||||||||||||||||| |||||| ||||||||
seq2  ATGAGAATATTGTCTCTACATATTGCAAAATGAG-ATAGCT-ATGGAAAT  996

seq1  GGTGTGATGTGACTTTCCTCTTATTCTAAAGAAGGAAAAGAAAGCAAAGA  1050
      |||||||||||||||| ||| |||||||||||    |||| ||||||   
seq2  GGTGTGATGTGACTTT-CTC-TATTCTAAAGA---GAAAGGAAGCAA--G  1039

seq1  AAATGTTTACCACAAAGACTTAAGAGTGCTATTATAGATGAAAGAAGAAA  1100
      ||||||||||||| ||||||| ||||||||| |||||||| ||||   ||
seq2  AAATGTTTACCAC-AAGACTT-AGAGTGCTA-TATAGATG-AAGA--GAA  1083

seq1  ACAGCACTGATGT  1113
      |||||||||||||
seq2  ACAGCACTGATGT  1096


| Home | SequenceCutter | Blast | Download |