BAC Information

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BAC

Clone NameB6Ng01-119P22
Chromosome6 (Build37)
Map Location 113,538,321 - 113,694,815
singlet/doubletdoublet
Overlap geneFancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Upstream geneEG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111
Downstream geneAtp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1, Atg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119P22.bB6Ng01-119P22.g
ACCDH924060DH924061
length9961,146
definitionDH924060|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P22, 5' end.DH924061|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,538,321 - 113,539,315)(113,693,600 - 113,694,815)
sequence
gaattctgttatttttaggaagatgttctgagcttgctgcaaacccttca
gttgaacacgaggctacttcatcacctttgtggacactccaaggtaagag
aggaacaggtctcactatgaagcataaccagccatggcctgaaattcgtt
acactcagtctccctgctttgaactccatgtccaaaggcagttagtttat
ttagattaagcaaatcctttgttgctggatgagactagaagggatcaaaa
aggagagctttatatttgcactcaaattttctagctgtttcctgttgcaa
cgcctctgaggacccgagtgtcattgtgcccatgtataatcctagcacta
cagctggctggcctaggccacatgcatgatactgtttcaggacagcccag
aagagggaagagaggagagagaggatagaacactcctagatgacttactg
ttacagtgtcctagagttagggtttttgggttgttttttgtttgcttgtt
ttttcttttttagatattttctttatttacctttcaaatgttatcccctt
tcctggtttcccctcagaaaactccctatcccatccccctccccctgctc
actaacccactcattcccacttccctgtcctgacgttcccctacactggg
gcatcgagccttcacaagaccaaaggcctctcctcccactgatgtccaaa
aaggccatcctctgctatatatgcagctggagccatagatccctccatgt
gtactctttagttggtggtttagtccctgggagctctgggggtctggttg
gttgatattgttgttctgcctatgggactgcaaaccccttcagctccttc
agatctttctctaattcctccatttggggactgtcttagtcagggtttct
attcctgcacaacatcatgaccaagcagcaagttggggaggaaagggttt
attcagcttacactttccacattgctgtcctcacctaaggaagtca
gaattctgagaagctatcaacttacttgtcccctaagccccggaattgtc
gagagagaccaccaagccccacctaacaagtcatcgcctgtggttgtccc
agagcaagcccccatatgctccttgtctggatgggaaaggaagacctctc
ccaggcccagtacttggacagaacattccgactcatcagacccacacaac
agagggacagagggacagtgggacagagggacgttttctgtctgcctttt
ctaaactggcttttggtcattttatttgggttactgggagtcatctctta
ttcagagttttaacacctttgggatacaagaatgtcttgcctggatgtcg
ttgcacccttgatgtagctataggaggttgccaactgaaccacacactga
caagctttccacccaacacactgacagttttccacctgaggccccaccct
tggagaaccctaggagtgaggattcttctagaagcaccaaggccacactc
agaccctaaaagttcccatgtgttttccaaggtccaaatgaagccctctg
atttaatatagagatccgacccacccaaggcatgggaccccaggccctgg
gtagctgccatcatcccctgctcccaaaaacaaaaggtttgaggctgctt
gggcccttccaggcccttggtctgttttgtaacgtctgtggtgctctccc
tccagggcccctcctctcggggggtcaccacactctgctatctctcgtgt
gcacatcttttataacggagtagcgagggaatggtgccgcctccagcttc
cataagctgcctgggctctggggggctctgggacaatcggggctgggaag
tgactgtgctcttattgtacactctttatttctctgtatctctggctgtg
ctctttgtaactaacaggatttgtctgccttttcacactatactaagcat
aacaataaatgcacacatgaaacgcagcatggtaacatcccagccttttc
gaagacagctggttcccctcctcctatggattgacttgggagtcctctgg
ttgggaagacattgcctagattcacatctggctccacactgtgaactcgg
gagtcatatccgtctctaaggagcttgggaagcttcagggagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113538321_113539315
seq2: B6Ng01-119P22.b_50_1045

seq1  GAATTCTGTTATTTTTAGGAAGATGTTCTGAGCTTGCTGCAAACCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATTTTTAGGAAGATGTTCTGAGCTTGCTGCAAACCCTTCA  50

seq1  GTTGAACACGAGGCTACTTCATCACCTTTGTGGACACTCCAAGGTAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACACGAGGCTACTTCATCACCTTTGTGGACACTCCAAGGTAAGAG  100

seq1  AGGAACAGGTCTCACTATGAAGCATAACCAGCCATGGCCTGAAATTCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGGTCTCACTATGAAGCATAACCAGCCATGGCCTGAAATTCGTT  150

seq1  ACACTCAGTCTCCCTGCTTTGAACTCCATGTCCAAAGGCAGTTAGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGTCTCCCTGCTTTGAACTCCATGTCCAAAGGCAGTTAGTTTAT  200

seq1  TTAGATTAAGCAAATCCTTTGTTGCTGGATGAGACTAGAAGGGATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAAGCAAATCCTTTGTTGCTGGATGAGACTAGAAGGGATCAAAA  250

seq1  AGGAGAGCTTTATATTTGCACTCAAATTTTCTAGCTGTTTCCTGTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCTTTATATTTGCACTCAAATTTTCTAGCTGTTTCCTGTTGCAA  300

seq1  CGCCTCTGAGGACCCGAGTGTCATTGTGCCCATGTATAATCCTAGCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGAGGACCCGAGTGTCATTGTGCCCATGTATAATCCTAGCACTA  350

seq1  CAGCTGGCTGGCCTAGGCCACATGCATGATACTGTTTCAGGACAGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTGGCCTAGGCCACATGCATGATACTGTTTCAGGACAGCCCAG  400

seq1  AAGAGGGAAGAGAGGAGAGAGAGGATAGAACACTCCTAGATGACTTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAAGAGAGGAGAGAGAGGATAGAACACTCCTAGATGACTTACTG  450

seq1  TTACAGTGTCCTAGAGTTAGGGTTTTTGGGTTGTTTTTTGTTTGCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTCCTAGAGTTAGGGTTTTTGGGTTGTTTTTTGTTTGCTTGTT  500

seq1  TTTTCTTTTTTAGATATTTTCTTTATTTACCTTTCAAATGTTATCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTAGATATTTTCTTTATTTACCTTTCAAATGTTATCCCCTT  550

seq1  TCCTGGTTTCCCCTCAGAAAACTCCCTATCCCATCCCCCTCCCCCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTCCCCTCAGAAAACTCCCTATCCCATCCCCCTCCCCCTGCTC  600

seq1  ACTAACCCACTCATTCCCACTTCCCTGTCCTGACGTTCCCCTACACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCCACTCATTCCCACTTCCCTGTCCTGACGTTCCCCTACACTGGG  650

seq1  GCATCGAGCCTTCACAAGACCAAAGGCCTCTCCTCCCACTGATGTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGCCTTCACAAGACCAAAGGCCTCTCCTCCCACTGATGTCCAAA  700

seq1  AAGGCCATCCTCTGCTATATATGCAGCTGGAGCCATAGATCCCTCCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCCTCTGCTATATATGCAGCTGGAGCCATAGATCCCTCCATGT  750

seq1  GTACTCTTTAGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGTCTGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTTAGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGTCTGGTTG  800

seq1  GTTGATATTGTTGTTCTGCCTATGGGACTGCAAACCCCTTCAGCTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTGTTGTTCTGCCTATGGGACTGCAAACCCCTTCAGCTCCTTC  850

seq1  AGATCTTTCTCTAATTCCTCCA-TTGGGGACTGTCTTAGTCAGGGTTTCT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATCTTTCTCTAATTCCTCCATTTGGGGACTGTCTTAGTCAGGGTTTCT  900

seq1  ATTCCTGCACAAACATCATGACCAAGCAGCAAGTTGGGGAGGAAAGGGTT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCAC-AACATCATGACCAAGCAGCAAGTTGGGGAGGAAAGGGTT  949

seq1  TATTCAGCTTACAC-TTCCACATTGCTGTTCATCACC-AAGGAAGTCA  995
      |||||||||||||| ||||||||||||| || ||||| ||||||||||
seq2  TATTCAGCTTACACTTTCCACATTGCTG-TCCTCACCTAAGGAAGTCA  996

seq1: chr6_113693600_113694815
seq2: B6Ng01-119P22.g_69_1214 (reverse)

seq1  TTTTCTCCCTGCTACTTTGCTTTTGAGTAACTCTTTTCTTCCTGAGACCC  50
                                       |||||| |||||     
seq2  ---------------------------------TTTTCTCCCTGA-----  12

seq1  TTCCTCCCAAGCCTTCCCTCAGAGACGGGTTAATGACTCACGGAAGTTCC  100
        | ||||||||    ||| |||||||| |  ||||||| ||  ||||| 
seq2  AGCTTCCCAAGC---TCCTTAGAGACGGAT--ATGACTCCCG--AGTTCA  55

seq1  CACAGGTGATGGGAGCTCAAAGATGTG-ATCTAGAGCAAAATGTCTTTCC  149
      ||   |||   |||||    ||||||| |||||| ||  |||||| ||||
seq2  CA---GTG--TGGAGC---CAGATGTGAATCTAG-GC--AATGTC-TTCC  93

seq1  CAACCAGAGACTTCCCCAGGTTCAAATCCATAGAGAGAGGGGACCCAGCT  199
      |||||||||   |||| ||  || |||||||||   ||||||| ||||||
seq2  CAACCAGAGGACTCCCAAG--TC-AATCCATAGGAGGAGGGGAACCAGCT  140

seq1  GTCCTTCGGAAAAAGGCCTTGGGATGTTTACCATGCCTGCGTTTCCATGT  249
      || |||||  |||||||  ||||||| |||||||| |||||||| |||||
seq2  GT-CTTCG--AAAAGGC--TGGGATG-TTACCATG-CTGCGTTT-CATGT  182

seq1  GTGCATTTATTGTTATTGCTTAGTATAGTGTTGAAAAGGCAGACAAATCC  299
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  GTGCATTTATTGTTA-TGCTTAGTATAGTG-TGAAAAGGCAGACAAATCC  230

seq1  TGTTAGTTACAAAGAGCACAAGCCAGAGATACAGAGAAATAAAGAGTGTA  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTAGTTACAAAGAGCAC-AGCCAGAGATACAGAGAAATAAAGAGTGTA  279

seq1  CAATAAGAGCACAGTCACTTCCCAGCCCCGATTGTCCCAGAGCCCCCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAGCACAGTCACTTCCCAGCCCCGATTGTCCCAGAGCCCCCCAG  329

seq1  AGCCCAGGCAGCTTATGGAAGCTGGAGGCGGCACCATTCCCTCGCTACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCAGCTTATGGAAGCTGGAGGCGGCACCATTCCCTCGCTACTC  379

seq1  CGTTATAAAAGATGTGCACACGAGAGATAGCAGAGTGTGGTGACCCCCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATAAAAGATGTGCACACGAGAGATAGCAGAGTGTGGTGACCCCCCG  429

seq1  AGAGGAGGGGCCCTGGAGGGAGAGCACCACAGACGTTACAAAACAGACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGGCCCTGGAGGGAGAGCACCACAGACGTTACAAAACAGACCA  479

seq1  AGGGCCTGGAAGGGCCCAAGCAGCCTCAAACCTTTTGTTTTTGGGAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTGGAAGGGCCCAAGCAGCCTCAAACCTTTTGTTTTTGGGAGCAG  529

seq1  GGGATGATGGCAGCTACCCAGGGCCTGGGGTCCCATGCCTTGGGTGGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATGGCAGCTACCCAGGGCCTGGGGTCCCATGCCTTGGGTGGGTC  579

seq1  GGATCTCTATATTAAATCAGAGGGCTTCATTTGGACCTTGGAAAACACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTATATTAAATCAGAGGGCTTCATTTGGACCTTGGAAAACACAT  629

seq1  GGGAACTTTTAGGGTCTGAGTGTGGCCTTGGTGCTTCTAGAAGAATCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTTTAGGGTCTGAGTGTGGCCTTGGTGCTTCTAGAAGAATCCTC  679

seq1  ACTCCTAGGGTTCTCCAAGGGTGGGGCCTCAGGTGGAAAACTGTCAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGGGTTCTCCAAGGGTGGGGCCTCAGGTGGAAAACTGTCAGTGT  729

seq1  GTTGGGTGGAAAGCTTGTCAGTGTGTGGTTCAGTTGGCAACCTCCTATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGGAAAGCTTGTCAGTGTGTGGTTCAGTTGGCAACCTCCTATAG  779

seq1  CTACATCAAGGGTGCAACGACATCCAGGCAAGACATTCTTGTATCCCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAAGGGTGCAACGACATCCAGGCAAGACATTCTTGTATCCCAAA  829

seq1  GGTGTTAAAACTCTGAATAAGAGATGACTCCCAGTAACCCAAATAAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAAAACTCTGAATAAGAGATGACTCCCAGTAACCCAAATAAAATG  879

seq1  ACCAAAAGCCAGTTTAGAAAAGGCAGACAGAAAACGTCCCTCTGTCCCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCCAGTTTAGAAAAGGCAGACAGAAAACGTCCCTCTGTCCCAC  929

seq1  TGTCCCTCTGTCCCTCTGTTGTGTGGGTCTGATGAGTCGGAATGTTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTGTCCCTCTGTTGTGTGGGTCTGATGAGTCGGAATGTTCTGT  979

seq1  CCAAGTACTGGGCCTGGGAGAGGTCTTCCTTTCCCATCCAGACAAGGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACTGGGCCTGGGAGAGGTCTTCCTTTCCCATCCAGACAAGGAGC  1029

seq1  ATATGGGGGCTTGCTCTGGGACAACCACAGGCGATGACTTGTTAGGTGGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGGCTTGCTCTGGGACAACCACAGGCGATGACTTGTTAGGTGGG  1079

seq1  GCTTGGTGGTCTCTCTCGACAATTCCGGGGCTTAGGGGACAAGTAAGTTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGTCTCTCTCGACAATTCCGGGGCTTAGGGGACAAGTAAGTTG  1129

seq1  ATAGCTTCTCAGAATTC  1216
      |||||||||||||||||
seq2  ATAGCTTCTCAGAATTC  1146