BAC Information

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BAC

Clone NameB6Ng01-120E03
Chromosome6 (Build37)
Map Location 81,379,446 - 81,505,149
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120E03.bB6Ng01-120E03.g
ACCDH924249DH924250
length1,1411,052
definitionDH924249|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E03, 5' end.DH924250|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,504,005 - 81,505,149)(81,379,446 - 81,380,505)
sequence
gaattcattagcaaagtaagaaggggacatgaacacagcagcagagttaa
aagaacatttggtgacttcccccaacccaatggctgcagaaaaaatagcc
agtgtctggattaaagtgtgttttgaggctgcagaaaagtcaggcatgtg
agggagaagaaaacctgtaagataagggggaaagactaagataaaagaac
tgagaggagagaatgacatacatgagaagcagagcctataaataataggc
atgctacagagggaacaggaaaaaaataaacgaatttaaatgaaaagcat
tgcgcaaacttgcacatgaagattgagaaaggaaaatctattctaggcag
agaggatggaaagaaaccaggcatgggtatttcattacaaagacatttag
attttaaaaataaaagaaggaatttaaggaagaaaagcctgtttctttca
aagcataaaatgtctcagttttgtagtaccaaagctgaaagtcagtaggt
acaacaatacttaaggcattccaatgggcaaaccgcactaggaatttaat
aattcactatatattcacagaagtacacataccaataagcttacagggta
gaggatagcatgtgcgatgtgagaggataaacccagggatggggagatta
agagaaaaatagagattcattgcctgatgtctttggaataatattgcatt
gtggactgcagacttcagggcttgacttgagaacataatattaaaaagaa
gctttgagccaggcataatggtatatgcctttaatcccaacacttaggag
gcagaggcagggggaatttctgtgagtttgaggccatcctggtctacata
gtgagttccaggacagctagaatatgtccaggggcctgtttcagaagaac
aaaacaaaacaaaaataaaacaaaacaaaatacccaccacaaagatttta
taggagaacagtatatggtgtttgagcccgtcctggttagtttgttttgt
cagcttgacagcctagaattcatctgcgaagcagtcctcaatagaagatg
cccagttagattgccagtgggcatgtctatgagtgtcctgaatagtaata
aaatgtaagaaagctccactgaccggtggggtgtaccattc
gaattccactgcatactgaagaccatcagtctgctaggacttccctggta
ctcctatgccaggctgggactgctgagacaccaagtcttacagactgaac
agctgccagatccttggcctttccacctgggaacagccattgttggactg
ctgatacacacacacacacacacacacacacacacacacacattctctaa
tcaaacagaactgatagaatgaatgtgtgttcatgtgtgtgcaaaatgca
cacttttcttattgattttgttactctggggaaccctgtctaacatgtat
gtttattatccctgtataacttcttagtgtataatttccactcacatggt
catcttaagcattaactactgccaaactagtttctaaggtgtttgcacta
ttttaaatgtgcacggtcagtgtatggtcgttgccaacattacacttctg
tgtgtttctcctggggggtgagagttgaacctcctaaatgagtagtgata
ttgtacattttgctcatttaccatctgtacatcttttccagagacctgtc
tatccagagctgtctttcaatattcactgatttctttttcttttcacatt
atagtttttttaatacattcttgatacatagtactctccagatagatgat
ctgaaactgtcttcttccacattgagctttctaggggatgtgtaacagaa
atacagcttcactcttttccattccttgaagatataagttgaaaatatag
ttgtccctcggtatgtgttggggatttgttccagatccccatagatagca
tgacctatgattgctcaagtctgttatataaactgccatagtatttgtac
acagctgaggaaaatccccctgtaatactgaagatgattctaggctacaa
cacctaacacatgtaaatgatataaacagttgtcacacagtattgcttgg
ggactagtgactcttttaaagtctatacattttcgtgtagaagcaatttt
ttcaaaagttattagttaaaggtgatttaaacacagggccgagctcagga
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81504005_81505149
seq2: B6Ng01-120E03.b_48_1188 (reverse)

seq1  GAATGGTGACACCC--ACGGTCAGTTGAGCCTTCTTACA-TCTATTACTA  47
      ||||||| ||||||   |||||||| |||| |||||||| | ||||||||
seq2  GAATGGT-ACACCCCACCGGTCAGTGGAGCTTTCTTACATTTTATTACTA  49

seq1  CTCAGGACAAACCTCATAGACATGCCCACTGGCAAATCTTACCTGGGCAA  97
       ||||||||   ||||||||||||||||||||| |||| || ||||||| 
seq2  TTCAGGACA---CTCATAGACATGCCCACTGGC-AATC-TAACTGGGCA-  93

seq1  TCCTTCTATTGA-GACTGCCTTCGCAGATGAA-TCTAGGCTGTCAAGCTG  145
        |||||||||| ||||| ||||||||||||| |||||||||||||||||
seq2  -TCTTCTATTGAGGACTG-CTTCGCAGATGAATTCTAGGCTGTCAAGCTG  141

seq1  AC-AAACAAACTAACCAGGACGGGCTCAAACACCAATATACTGTTCTCCT  194
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAACAAACTAACCAGGACGGGCTCAAACACC-ATATACTGTTCTCCT  190

seq1  ATAAAATCTTTGT-GTGGGTATTTTTGTTTTGTTTTATTTTTGTTTTGTT  243
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ATAAAATCTTTGTGGTGGGTA-TTTTGTTTTGTTTTATTTTTGTTTTGTT  239

seq1  TTGTTCTTCTGAAACAGGCCCCTGGACATATTCTAGCTGTCCTGGAACTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTGAAACAGGCCCCTGGACATATTCTAGCTGTCCTGGAACTC  289

seq1  ACTATGTAGACCAGGATGGCCTCAAACTCACAGAAATTCCCCCTGCCTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAGACCAGGATGGCCTCAAACTCACAGAAATTCCCCCTGCCTCT  339

seq1  GCCTCCTAAGTGTTGGGATTAAAGGCATATACCATTATGCCTGGCTCAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTAAGTGTTGGGATTAAAGGCATATACCATTATGCCTGGCTCAAA  389

seq1  GCTTCTTTTTAATATTATGTTCTCAAGTCAAGCCCTGAAGTCTGCAGTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTTTAATATTATGTTCTCAAGTCAAGCCCTGAAGTCTGCAGTCC  439

seq1  ACAATGCAATATTATTCCAAAGACATCAGGCAATGAATCTCTATTTTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAATATTATTCCAAAGACATCAGGCAATGAATCTCTATTTTTCT  489

seq1  CTTAATCTCCCCATCCCTGGGTTTATCCTCTCACATCGCACATGCTATCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTCCCCATCCCTGGGTTTATCCTCTCACATCGCACATGCTATCC  539

seq1  TCTACCCTGTAAGCTTATTGGTATGTGTACTTCTGTGAATATATAGTGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTGTAAGCTTATTGGTATGTGTACTTCTGTGAATATATAGTGAA  589

seq1  TTATTAAATTCCTAGTGCGGTTTGCCCATTGGAATGCCTTAAGTATTGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATTCCTAGTGCGGTTTGCCCATTGGAATGCCTTAAGTATTGTT  639

seq1  GTACCTACTGACTTTCAGCTTTGGTACTACAAAACTGAGACATTTTATGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACTGACTTTCAGCTTTGGTACTACAAAACTGAGACATTTTATGC  689

seq1  TTTGAAAGAAACAGGCTTTTCTTCCTTAAATTCCTTCTTTTATTTTTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGAAACAGGCTTTTCTTCCTTAAATTCCTTCTTTTATTTTTAAA  739

seq1  ATCTAAATGTCTTTGTAATGAAATACCCATGCCTGGTTTCTTTCCATCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATGTCTTTGTAATGAAATACCCATGCCTGGTTTCTTTCCATCCT  789

seq1  CTCTGCCTAGAATAGATTTTCCTTTCTCAATCTTCATGTGCAAGTTTGCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTAGAATAGATTTTCCTTTCTCAATCTTCATGTGCAAGTTTGCG  839

seq1  CAATGCTTTTCATTTAAATTCGTTTATTTTTTTCCTGTTCCCTCTGTAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTTTCATTTAAATTCGTTTATTTTTTTCCTGTTCCCTCTGTAGC  889

seq1  ATGCCTATTATTTATAGGCTCTGCTTCTCATGTATGTCATTCTCTCCTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTATTATTTATAGGCTCTGCTTCTCATGTATGTCATTCTCTCCTCT  939

seq1  CAGTTCTTTTATCTTAGTCTTTCCCCCTTATCTTACAGGTTTTCTTCTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTTATCTTAGTCTTTCCCCCTTATCTTACAGGTTTTCTTCTCC  989

seq1  CTCACATGCCTGACTTTTCTGCAGCCTCAAAACACACTTTAATCCAGACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGCCTGACTTTTCTGCAGCCTCAAAACACACTTTAATCCAGACA  1039

seq1  CTGGCTATTTTTTCTGCAGCCATTGGGTTGGGGGAAGTCACCAAATGTTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATTTTTTCTGCAGCCATTGGGTTGGGGGAAGTCACCAAATGTTC  1089

seq1  TTTTAACTCTGCTGCTGTGTTCATGTCCCCTTCTTACTTTGCTAATGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTCTGCTGCTGTGTTCATGTCCCCTTCTTACTTTGCTAATGAAT  1139

seq1  TC  1145
      ||
seq2  TC  1141

seq1: chr6_81379446_81380505
seq2: B6Ng01-120E03.g_66_1117

seq1  GAATTCCACTGCATACTGAAGACCATCAGTCTGCTAGGACTTCCCTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCATACTGAAGACCATCAGTCTGCTAGGACTTCCCTGGTA  50

seq1  CTCCTATGCCAGGCTGGGACTGCTGAGACACCAAGTCTTACAGACTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGCCAGGCTGGGACTGCTGAGACACCAAGTCTTACAGACTGAAC  100

seq1  AGCTGCCAGATCCTTGGCCTTTCCACCTGGGAACAGCCATTGTTGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAGATCCTTGGCCTTTCCACCTGGGAACAGCCATTGTTGGACTG  150

seq1  CTGATACACACACACACACACACACACACACACACACACACATTCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACACACACACACACACACACACACACACACACACACATTCTCTAA  200

seq1  TCAAACAGAACTGATAGAATGAATGTGTGTTCATGTGTGTGCAAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAACTGATAGAATGAATGTGTGTTCATGTGTGTGCAAAATGCA  250

seq1  CACTTTTCTTATTGATTTTGTTACTCTGGGGAACCCTGTCTAACATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCTTATTGATTTTGTTACTCTGGGGAACCCTGTCTAACATGTAT  300

seq1  GTTTATTATCCCTGTATAACTTCTTAGTGTATAATTTCCACTCACATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTATCCCTGTATAACTTCTTAGTGTATAATTTCCACTCACATGGT  350

seq1  CATCTTAAGCATTAACTACTGCCAAACTAGTTTCTAAGGTGTTTGCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAGCATTAACTACTGCCAAACTAGTTTCTAAGGTGTTTGCACTA  400

seq1  TTTTAAATGTGCACGGTCAGTGTATGGTCGTTGCCAACATTACACTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTGCACGGTCAGTGTATGGTCGTTGCCAACATTACACTTCTG  450

seq1  TGTGTTTCTCCTGGGGGGTGAGAGTTGAACCTCCTAAATGAGTAGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTCCTGGGGGGTGAGAGTTGAACCTCCTAAATGAGTAGTGATA  500

seq1  TTGTACATTTTGCTCATTTACCATCTGTACATCTTTTCCAGAGACCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATTTTGCTCATTTACCATCTGTACATCTTTTCCAGAGACCTGTC  550

seq1  TATCCAGAGCTGTCTTTCAATATTCACTGATTTCTTTTTCTTTTCACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAGCTGTCTTTCAATATTCACTGATTTCTTTTTCTTTTCACATT  600

seq1  ATAGTTTTTTTAATACATTCTTGATACATAGTACTCTCCAGATAGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTTTAATACATTCTTGATACATAGTACTCTCCAGATAGATGAT  650

seq1  CTGAAACTGTCTTCTTCCACATTGAGCTTTCTAGGGGATGTGTAACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTGTCTTCTTCCACATTGAGCTTTCTAGGGGATGTGTAACAGAA  700

seq1  ATACAGCTTCACTCTTTTCCATTCCTTGAAGATATAAGTTGAAAATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTTCACTCTTTTCCATTCCTTGAAGATATAAGTTGAAAATATAG  750

seq1  TTGTCCCTCGGTATGTGTTGGGGATTTGTTCCAGATCCCCATAGATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTCGGTATGTGTTGGGGATTTGTTCCAGATCCCCATAGATAGCA  800

seq1  TGACCTATGATTGCTCAAGTCTGTTATATAAACTGCCATAGTATTTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGATTGCTCAAGTCTGTTATATAAACTGCCATAGTATTTGTAC  850

seq1  ACAGCTGAGGAAAATCCCCCTGTAATACTGAAGATGATTTCTAGGCTACA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGCTGAGGAAAATCCCCCTGTAATACTGAAGATGA-TTCTAGGCTACA  899

seq1  ACACCTAACACAATGTAAATGATATAAACAGTTGTCACACAGTATTGCTT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAACAC-ATGTAAATGATATAAACAGTTGTCACACAGTATTGCTT  948

seq1  GGGGACTAGTGACTCTTTTAAAAGTCTATACATGTTCGGTGTAGAAGCAA  1000
      ||||||||||||||||||| ||||||||||||| ||| ||||||||||||
seq2  GGGGACTAGTGACTCTTTT-AAAGTCTATACATTTTC-GTGTAGAAGCAA  996

seq1  TTTTTTTCAAAAGTTATTAGTGTATAGTTGATTTAAAACACAGGGCCAGA  1050
       |||||||||||||||||||| || || |||||| |||||||||||| ||
seq2  -TTTTTTCAAAAGTTATTAGT-TAAAGGTGATTT-AAACACAGGGCC-GA  1042

seq1  GCTCAGGAAT  1060
      ||||||||||
seq2  GCTCAGGAAT  1052