BAC Information

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BAC

Clone NameB6Ng01-120I04
Chromosome6 (Build37)
Map Location 108,123,010 - 108,277,440
singlet/doubletdoublet
Overlap geneSumf1, Itpr1
Upstream geneLrrn1, Setmar, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I04.bB6Ng01-120I04.g
ACCDH924437DH924438
length1,0951,020
definitionDH924437|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I04, 5' end.DH924438|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,123,010 - 108,124,112)(108,276,420 - 108,277,440)
sequence
gaattcatgaatacttatgaaactctaggtccacaccagcccctgccaag
atcaagactttgaaaacagaagtctgtagctctcatttatcctccattct
aaaaatggctgcaagtaaaacacaaagtacagggctgaattctactctgc
agtgcagtgtcgctcgctctaagggacaggcagaaactaaacatcttcct
gggcctgtacattttcagccagagaaggtaccctggcccatggacctgtg
actcagagagtgggagaatggctaggcaccagtcgggagaggaaggtagt
acttatgtttctgatgagagcttatttaaacatcacttactgcctggtgg
atatgcgttttcacttgctcgctcaacatgccttcaaagacgaaagagtc
tccaaacttctcagcctataaggagagtaaaaaagaaaaagccagaaaat
gttagagtcagggcatccagggtgccattttcttcacaatgctactatgg
tgattcttcctatccaagtaaatgcgagttttcccaaaatgtcttgaaag
tatctaagttcctcttaaagaaggttcatgtacctcaagagactgttttc
atgtgagaccagattagctgataagactgccggctgcacaagattagatt
ctaagaagatgaacgacccatggaaggaaacatatttctcccaatattgt
aaataactctgagaaatgactttatttagtagatgtaatactacacaagt
aagctgtttgttctctgccctgctcctgggatctgcctaaaagaattaaa
cggcactgatggctggttctctgatacgctctatgtgtttacagttgtca
tgggccaatctaagcgtcagtggaaatttatattttaaacagttcttaac
agtggttatcacaaacattcattgatatctgctctgaaagtgggatccct
tgtccctaacttcctgtgactctactgttcagtttcttctacatagtcac
tgtctcaaatcatgtaacatgaaggctgctttcttggcttcttcgagctc
tgcacaggcctgtgttgtacttcttttttttgcgggggggggtgc
gaattcacttggttcaaggaggttttggcttgtttgtttgttttgttttg
aagctgtaattcaacataaagggaatgagagaaggttgtggggggaaaaa
aaggaatgctggatggatctatccaataaaaagaatctaacacatggaca
catggagagtcgggggtagagcgagaaaagtcacatttgtgacacaaaca
acactgtaggctttggggtgaaaactcttgctatattgaactcatttcac
ctctcagagtcaaaagcaaagagatctcactgcaccaggcctggtgtttc
aaaacctgcagccttagccacgccagcttatagccaccaaagggctttgg
aaggcttaaggcagcctggcatgaaaggagttacataagttaccaggctg
gtccttcccagagtctcctggaaaagtacacttttttttcactacacaaa
aggaaagtaggctgtttctgccccacgatgtgatgtgcctttcacttaaa
gtcagtaaaacctggttgcaggcaccatgggaagcctgaagagtgtctgc
atcacggggacacggggacacaaaagcaagccgagatgcgaaagccatct
agcgaagccctcggcggagcttggcaggtacaggccgctggcagggaagg
aagatcactgtgtacacaaagaaagaagccagaggagtcagttgctcggg
agccaggcccgtagccccacagatgatttcctcatctgtgcagtgggtac
ggactggaaatagaaaaggaaccaacagccgagcagagctgccgcagacg
gctttgcctcagttctccacaggaagagaacaaggatgcctgcccatgta
tactttgctatccctttctttcctgcttgctacttagagagacgatgaga
acctaacctggaccaccccaggactgttgctccacccagcactccgagac
agctcctgtcagtggggttgtggggccatgccctcccatcagaaaagatc
atttttatcagcactcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108123010_108124112
seq2: B6Ng01-120I04.b_44_1138

seq1  GAATTCATGAATACTTATGAAACTCTAGGTCCACACCAGCCCCTGCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATACTTATGAAACTCTAGGTCCACACCAGCCCCTGCCAAG  50

seq1  ATCAAGACTTTGAAAACAGAAGTCTGTAGCTCTCATTTATCCTCCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACTTTGAAAACAGAAGTCTGTAGCTCTCATTTATCCTCCATTCT  100

seq1  AAAAATGGCTGCAAGTAAAACACAAAGTACAGGGCTGAATTCTACTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTGCAAGTAAAACACAAAGTACAGGGCTGAATTCTACTCTGC  150

seq1  AGTGCAGTGTCGCTCGCTCTAAGGGACAGGCAGAAACTAAACATCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTGTCGCTCGCTCTAAGGGACAGGCAGAAACTAAACATCTTCCT  200

seq1  GGGCCTGTACATTTTCAGCCAGAGAAGGTACCCTGGCCCATGGACCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTACATTTTCAGCCAGAGAAGGTACCCTGGCCCATGGACCTGTG  250

seq1  ACTCAGAGAGTGGGAGAATGGCTAGGCACCAGTCGGGAGAGGAAGGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAGTGGGAGAATGGCTAGGCACCAGTCGGGAGAGGAAGGTAGT  300

seq1  ACTTATGTTTCTGATGAGAGCTTATTTAAACATCACTTACTGCCTGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTTTCTGATGAGAGCTTATTTAAACATCACTTACTGCCTGGTGG  350

seq1  ATATGCGTTTTCACTTGCTCGCTCAACATGCCTTCAAAGACGAAAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGTTTTCACTTGCTCGCTCAACATGCCTTCAAAGACGAAAGAGTC  400

seq1  TCCAAACTTCTCAGCCTATAAGGAGAGTAAAAAAGAAAAAGCCAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTTCTCAGCCTATAAGGAGAGTAAAAAAGAAAAAGCCAGAAAAT  450

seq1  GTTAGAGTCAGGGCATCCAGGGTGCCATTTTCTTCACAATGCTACTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTCAGGGCATCCAGGGTGCCATTTTCTTCACAATGCTACTATGG  500

seq1  TGATTCTTCCTATCCAAGTAAATGCGAGTTTTCCCAAAATGTCTTGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTCCTATCCAAGTAAATGCGAGTTTTCCCAAAATGTCTTGAAAG  550

seq1  TATCTAAGTTCCTCTTAAAGAAGGTTCATGTACCTCAAGAGACTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGTTCCTCTTAAAGAAGGTTCATGTACCTCAAGAGACTGTTTTC  600

seq1  ATGTGAGACCAGATTAGCTGATAAGACTGCCGGCTGCACAAGATTAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGACCAGATTAGCTGATAAGACTGCCGGCTGCACAAGATTAGATT  650

seq1  CTAAGAAGATGAACGACCCATGGAAGGAAACATATTTCTCCCAATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGATGAACGACCCATGGAAGGAAACATATTTCTCCCAATATTGT  700

seq1  AAATAACTCTGAGAAATGACTTTATTTAGTAGATGTAATACTACACAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTCTGAGAAATGACTTTATTTAGTAGATGTAATACTACACAAGT  750

seq1  AAGCTGTTTGTTCTCTGCCCTGCTCCTGGGATCTGCCTAAAAGAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTGTTCTCTGCCCTGCTCCTGGGATCTGCCTAAAAGAATTAAA  800

seq1  CGGCACTGATGGCTGGTTCTCTGATACGCTCTATGTGTTTACAGTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACTGATGGCTGGTTCTCTGATACGCTCTATGTGTTTACAGTTGTCA  850

seq1  TGGGCCAATCTAAGCGTCAGGTGGAAATTTATATTTTAAACAGTTCTTAA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGGCCAATCTAAGCGTCA-GTGGAAATTTATATTTTAAACAGTTCTTAA  899

seq1  CAGTGG-TATCACAAACATTCATTGATATCTGCTCTGAAAGTGGGATCCC  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTATCACAAACATTCATTGATATCTGCTCTGAAAGTGGGATCCC  949

seq1  TTGTCCCTTACTTCCTGTGACTCTACTGTTCAGTTTTCCTCCTACATAGT  999
      |||||||| |||||||||||||||||||||||||||  || |||||||||
seq2  TTGTCCCTAACTTCCTGTGACTCTACTGTTCAGTTT--CTTCTACATAGT  997

seq1  CCACTGTTCTTCCAAATCCATGTAACATGAGGGCTGCCTTCCTGGGCTCC  1049
       ||||| |||  ||||| |||||||||||| ||||| ||| || |||| |
seq2  -CACTG-TCT--CAAAT-CATGTAACATGAAGGCTG-CTTTCTTGGCTTC  1041

seq1  TCAGAGCTCTGCACAGGCCTGTG-TGTACTTCTTTTTTTTGGGGGGGGGA  1098
      |  |||||||||||||||||||| ||||||||||||||||| ||||||| 
seq2  TTCGAGCTCTGCACAGGCCTGTGTTGTACTTCTTTTTTTTGCGGGGGGG-  1090

seq1  GGTGC  1103
      |||||
seq2  GGTGC  1095

seq1: chr6_108276420_108277440
seq2: B6Ng01-120I04.g_68_1087 (reverse)

seq1  GTTTGAGTGCTGATTAAAAATGATCTTTTCTGAATGGTGAGGGCATGGCC  50
      ||||||||||||| |||||||||||||||||| |||| ||||||||||||
seq2  GTTTGAGTGCTGA-TAAAAATGATCTTTTCTG-ATGG-GAGGGCATGGCC  47

seq1  CCAC-ACCCACCTGACAGGAGCTGTCTCGGAGTGCTGGGTGGAGC-ACAG  98
      |||| ||||  |||||||||||||||||||||||||||||||||| ||||
seq2  CCACAACCCCACTGACAGGAGCTGTCTCGGAGTGCTGGGTGGAGCAACAG  97

seq1  TCCTGGGGTGGTCCAGGTTAGGTTCTCATCGTCTCTCTAAGTAGCAAGCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGTGGTCCAGGTTAGGTTCTCATCGTCTCTCTAAGTAGCAAGCA  147

seq1  GGAAAGAAAGGGATAGCAAAGTATACATGGGCAGGCATCCTTGTTCTCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGGGATAGCAAAGTATACATGGGCAGGCATCCTTGTTCTCTT  197

seq1  CCTGTGGAGAACTGAGGCAAAGCCGTCTGCGGCAGCTCTGCTCGGCTGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAGAACTGAGGCAAAGCCGTCTGCGGCAGCTCTGCTCGGCTGTT  247

seq1  GGTTCCTTTTCTATTTCCAGTCCGTACCCACTGCACAGATGAGGAAATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTTTCTATTTCCAGTCCGTACCCACTGCACAGATGAGGAAATCA  297

seq1  TCTGTGGGGCTACGGGCCTGGCTCCCGAGCAACTGACTCCTCTGGCTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGGCTACGGGCCTGGCTCCCGAGCAACTGACTCCTCTGGCTTCT  347

seq1  TTCTTTGTGTACACAGTGATCTTCCTTCCCTGCCAGCGGCCTGTACCTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGTACACAGTGATCTTCCTTCCCTGCCAGCGGCCTGTACCTGC  397

seq1  CAAGCTCCGCCGAGGGCTTCGCTAGATGGCTTTCGCATCTCGGCTTGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCGCCGAGGGCTTCGCTAGATGGCTTTCGCATCTCGGCTTGCTT  447

seq1  TTGTGTCCCCGTGTCCCCGTGATGCAGACACTCTTCAGGCTTCCCATGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCCCGTGTCCCCGTGATGCAGACACTCTTCAGGCTTCCCATGGT  497

seq1  GCCTGCAACCAGGTTTTACTGACTTTAAGTGAAAGGCACATCACATCGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAACCAGGTTTTACTGACTTTAAGTGAAAGGCACATCACATCGTG  547

seq1  GGGCAGAAACAGCCTACTTTCCTTTTGTGTAGTGAAAAAAAAGTGTACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAACAGCCTACTTTCCTTTTGTGTAGTGAAAAAAAAGTGTACTT  597

seq1  TTCCAGGAGACTCTGGGAAGGACCAGCCTGGTAACTTATGTAACTCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGACTCTGGGAAGGACCAGCCTGGTAACTTATGTAACTCCTTT  647

seq1  CATGCCAGGCTGCCTTAAGCCTTCCAAAGCCCTTTGGTGGCTATAAGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGCTGCCTTAAGCCTTCCAAAGCCCTTTGGTGGCTATAAGCTG  697

seq1  GCGTGGCTAAGGCTGCAGGTTTTGAAACACCAGGCCTGGTGCAGTGAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCTAAGGCTGCAGGTTTTGAAACACCAGGCCTGGTGCAGTGAGAT  747

seq1  CTCTTTGCTTTTGACTCTGAGAGGTGAAATGAGTTCAATATAGCAAGAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTTTTGACTCTGAGAGGTGAAATGAGTTCAATATAGCAAGAGT  797

seq1  TTTCACCCCAAAGCCTACAGTGTTGTTTGTGTCACAAATGTGACTTTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCCAAAGCCTACAGTGTTGTTTGTGTCACAAATGTGACTTTTCT  847

seq1  CGCTCTACCCCCGACTCTCCATGTGTCCATGTGTTAGATTCTTTTTATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTACCCCCGACTCTCCATGTGTCCATGTGTTAGATTCTTTTTATTG  897

seq1  GATAGATCCATCCAGCATTCCTTTTTTTCCCCCCACAACCTTCTCTCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATCCATCCAGCATTCCTTTTTTTCCCCCCACAACCTTCTCTCATT  947

seq1  CCCTTTATGTTGAATTACAGCTTCAAAACAAAACAAACAAACAAGCCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATGTTGAATTACAGCTTCAAAACAAAACAAACAAACAAGCCAAA  997

seq1  ACCTCCTTGAACCAAGTGAATTC  1021
      |||||||||||||||||||||||
seq2  ACCTCCTTGAACCAAGTGAATTC  1020