BAC Information

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BAC

Clone NameB6Ng01-121P23
Chromosome6 (Build37)
Map Location 29,807,657 - 29,937,215
singlet/doubletdoublet
Overlap gene4631427C17Rik, D330017J20Rik, 1700023L04Rik
Upstream geneSnd1, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream gene1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121P23.bB6Ng01-121P23.g
ACCDH925539DH925540
length1,075571
definitionDH925539|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P23, 5' end.DH925540|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,807,657 - 29,808,738)(29,936,640 - 29,937,215)
sequence
gaattctggagactgaattgaaatcaaactcaggcaagcatatttgccta
tagtgccagaggctctaagttcagctcccagcatcacggcttaaataata
ataccaccaccttgctttttgtgaaattaagataataatgccgacttggt
ggattattgtacctggcccaggacggtggctcagcaagtaaggatgcttg
ctgtcaagggtgggcctcagtgtgatcctcagagcccacgtaggaggaga
gaactggctcccacactgtcctctgaccacctccccacccccacatgaaa
tatatgtagtaaaacatcttttaaaagatacttgcatacactaatagaaa
taacctgtgggcttgcaatacgcattagcacatcacctcttcagagaaat
cagggaacactttcttttccctggaaagaaagactagctttgcaaaacaa
gctattatgttggcctttcttgctctcgacaagcagtttctcctcccctt
tcctgtcctctcctcctcttccctcccttccctctctactcctctcctct
tttttctttctcttctcactgtcaaatcatatccccacccaaatctatag
caggcacctagtgtagcattccttgggttcctttcagaaatcagaatcga
taagagagttttactctatttggttaaatctttgtttggcatgtaataag
gtcactgtgattctgggacctcagtgataaattctcccttgtgatcacac
cttccaggaaacatttttttttttaattgtgtagagagtttgtatgtgtg
tgtgtgtgtatgtgcacatcaatgtattgggtgtgcgtactcaacatatg
tgcatatgtacacccaccgtgtgtatagaaaggagaagttagagaaggat
attggatagcttttattgctgtctgcctgttgctttaagacagggtcttt
ccctgactcagaagcatggaagctcgccatctcactagctggcggccagt
gagctcttaggagctgactcacacagagtgctggtatatatgcaccgggc
cacgccagcaattactttggtactg
cttagcctaaactattatttggcacaccgaatggatgaaccatttgctaa
atgaataatgaattacaatcagatgggtgtgttggttcaaatatgaaatg
tctctaacaggttcacatgttgattgtttattcccaagagggccttgagg
agactttaggggggtagaactaggtagcagaagtaggtctttaggggtgg
gtctcacctggccctaccctctttgctttctgaccttccctgttggactc
tccgctgccctaagctctgccttctccactacgtgagacggaaacctgag
tgtgaccccgaataagccctccttctcttgaactgttgtttcaggtgttt
ggtcatagccacctgaagaaataaatacagacactttgcggttggagagg
ctatgcaaagataaagggaccaaccaagatcagagtggctgtccacaagc
aaatggggagtagggcagggtgggatggaaagggggaggggcgatcccgt
ctggaaagcaagtgaagagcagctttggccttcagcctctgtaaactatc
aatctgaacatttatacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29807657_29808738
seq2: B6Ng01-121P23.b_49_1123

seq1  GAATTCTGGAGACTGAATTGAAATCAAACTCAGGCAAGCATATTTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGACTGAATTGAAATCAAACTCAGGCAAGCATATTTGCCTA  50

seq1  TAGTGCCAGAGGCTCTAAGTTCAGCTCCCAGCATCACGGCTTAAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCAGAGGCTCTAAGTTCAGCTCCCAGCATCACGGCTTAAATAATA  100

seq1  ATACCACCACCTTGCTTTTTGTGAAATTAAGATAATAATGCCGACTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACCACCTTGCTTTTTGTGAAATTAAGATAATAATGCCGACTTGGT  150

seq1  GGATTATTGTACCTGGCCCAGGACGGTGGCTCAGCAAGTAAGGATGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTGTACCTGGCCCAGGACGGTGGCTCAGCAAGTAAGGATGCTTG  200

seq1  CTGTCAAGGGTGGGCCTCAGTGTGATCCTCAGAGCCCACGTAGGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGGGTGGGCCTCAGTGTGATCCTCAGAGCCCACGTAGGAGGAGA  250

seq1  GAACTGGCTCCCACACTGTCCTCTGACCACCTCCCCACCCCCACATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTCCCACACTGTCCTCTGACCACCTCCCCACCCCCACATGAAA  300

seq1  TATATGTAGTAAAACATCTTTTAAAAGATACTTGCATACACTAATAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAGTAAAACATCTTTTAAAAGATACTTGCATACACTAATAGAAA  350

seq1  TAACCTGTGGGCTTGCAATACGCATTAGCACATCACCTCTTCAGAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGGGCTTGCAATACGCATTAGCACATCACCTCTTCAGAGAAAT  400

seq1  CAGGGAACACTTTCTTTTCCCTGGAAAGAAAGACTAGCTTTGCAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACACTTTCTTTTCCCTGGAAAGAAAGACTAGCTTTGCAAAACAA  450

seq1  GCTATTATGTTGGCCTTTCTTGCTCTCGACAAGCAGTTTCTCCTCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATGTTGGCCTTTCTTGCTCTCGACAAGCAGTTTCTCCTCCCCTT  500

seq1  TCCTGTCCTCTCCTCCTCTTCCCTCCCTTCCCTCTCTACTCCTCTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTCTCCTCCTCTTCCCTCCCTTCCCTCTCTACTCCTCTCCTCT  550

seq1  TTTTTCTTTCTCTTCTCACTGTCAAATCATATCCCCACCCAAATCTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTCTTCTCACTGTCAAATCATATCCCCACCCAAATCTATAG  600

seq1  CAGGCACCTAGTGTAGCATTCCTTGGGTTCCTTTCAGAAATCAGAATCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCTAGTGTAGCATTCCTTGGGTTCCTTTCAGAAATCAGAATCGA  650

seq1  TAAGAGAGTTTTACTCTATTTGGTTAAATCTTTGTTTGGCATGTAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTTTTACTCTATTTGGTTAAATCTTTGTTTGGCATGTAATAAG  700

seq1  GTCACTGTGATTCTGGGACCTCAGTGATAAATTCTCCCTTGTGATCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGATTCTGGGACCTCAGTGATAAATTCTCCCTTGTGATCACAC  750

seq1  CTTCCAGGAAACA-TTTTTTTTTTAATTGTGTAGAGAGTTTGTATGTGTG  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAAACATTTTTTTTTTTAATTGTGTAGAGAGTTTGTATGTGTG  800

seq1  TGTGTGTGTATGTGCACATCAATGTATTGGGTGTGCGTACTCAACATATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGCACATCAATGTATTGGGTGTGCGTACTCAACATATG  850

seq1  TGCATATGTACACCCACCGTGTGTATAG-AAGGAGAAGTTAGAGAAGGAT  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCATATGTACACCCACCGTGTGTATAGAAAGGAGAAGTTAGAGAAGGAT  900

seq1  ATTGGATAGCTTTTATTGCTGTCTGCCTGTTGCTTTAAGACAGGGTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATAGCTTTTATTGCTGTCTGCCTGTTGCTTTAAGACAGGGTCTTT  950

seq1  CCCTGACCCAGAAGCATGGAAGCTCGCCATCTCCACTAGGCTGGCCGGCC  998
      ||||||| |||||||||||||||||||||||| ||||| ||||| |||||
seq2  CCCTGACTCAGAAGCATGGAAGCTCGCCATCT-CACTA-GCTGG-CGGCC  997

seq1  AGTGAGCTCCTAGGAGCTGACTCCACACCAGAGTGCCTGGGTAATAGTGC  1048
      ||||||||| |||||||||||| |||| ||||||| ||||   ||| |||
seq2  AGTGAGCTCTTAGGAGCTGACT-CACA-CAGAGTG-CTGGTATATA-TGC  1043

seq1  ACCCGGCCACGCCCAGCATTTTACTTTGGTACTG  1082
      ||| ||||||| ||||||  ||||||||||||||
seq2  ACCGGGCCACG-CCAGCA-ATTACTTTGGTACTG  1075

seq1: chr6_29936640_29937215
seq2: B6Ng01-121P23.g_68_643 (reverse)

seq1  TTTGTATAAATGTCCAGCTTGTTAGTTTACAGAGGCTGAAGGCCAAAGCT  50
      ||||||||||||| ||| ||| ||||||||||||||||||||||||||||
seq2  TTTGTATAAATGTTCAGATTGATAGTTTACAGAGGCTGAAGGCCAAAGCT  50

seq1  GCTCTTCACTTGCTTTCCAGACCTGATCGCCCCTCCCCCTTTCCATCCCA  100
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GCTCTTCACTTGCTTTCCAGACGGGATCGCCCCTCCCCCTTTCCATCCCA  100

seq1  CCCTGCCCTACTCCCCATTTGCTTGTGGACAGCCACTCTGATCTTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCTACTCCCCATTTGCTTGTGGACAGCCACTCTGATCTTGGTTG  150

seq1  GTCCCTTTATCTTTGCATAGCCTCTCCAACCGCAAAGTGTCTGTATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTATCTTTGCATAGCCTCTCCAACCGCAAAGTGTCTGTATTTAT  200

seq1  TTCTTCAGGTGGCTATGACCAAACACCTGAAACAACAGTTCAAGAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGGTGGCTATGACCAAACACCTGAAACAACAGTTCAAGAGAAGG  250

seq1  AGGGCTTATTCGGGGTCACACTCAGGTTTCCGTCTCACGTAGTGGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTATTCGGGGTCACACTCAGGTTTCCGTCTCACGTAGTGGAGAAG  300

seq1  GCAGAGCTTAGGGCAGCGGAGAGTCCAACAGGGAAGGTCAGAAAGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTAGGGCAGCGGAGAGTCCAACAGGGAAGGTCAGAAAGCAAAG  350

seq1  AGGGTAGGGCCAGGTGAGACCCACCCCTAAAGACCTACTTCTGCTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGGCCAGGTGAGACCCACCCCTAAAGACCTACTTCTGCTACCTA  400

seq1  GTTCTACCCCCCTAAAGTCTCCTCAAGGCCCTCTTGGGAATAAACAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCCCCCTAAAGTCTCCTCAAGGCCCTCTTGGGAATAAACAATCA  450

seq1  ACATGTGAACCTGTTAGAGACATTTCATATTTGAACCAACACACCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAACCTGTTAGAGACATTTCATATTTGAACCAACACACCCATCT  500

seq1  GATTGTAATTCATTATTCATTTAGCAAATGGTTCATCCATTCGGTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAATTCATTATTCATTTAGCAAATGGTTCATCCATTCGGTGTGCC  550

seq1  AAATAATAGTTTAGGCTAAGGAATTC  576
      ||||||||||||||||||||||||||
seq2  AAATAATAGTTTAGGCTAAGGAATTC  576