BAC Information

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BAC

Clone NameB6Ng01-122C13
Chromosome6 (Build37)
Map Location 78,492,184 - 78,584,339
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122C13.bB6Ng01-122C13.g
ACCDH925658DH925659
length1,1881,107
definitionDH925658|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C13, 5' end.DH925659|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,583,150 - 78,584,339)(78,492,184 - 78,493,319)
sequence
gaattccatgtaatctcactcccagttcctttggtaacaatactgtatct
tggtactatttacttaaaaattgtcttcattaatggttatttcccctgga
gaacttgagttctctttttcttctctgttgatgtgatgaaagtaaagcaa
gaccagtcttacaaaagtaaatatagaatgagatggttttattttgtctt
cttcccatgaagacaaggtattccatcagttagggaaagcctagaattaa
gagaagcaagcttgccaatcaatacatagaaagcagatagagataataga
aaacagcaccaagatataaatcctcgaaccaggattcagtgatatctcca
gcagggctccacctcctaaagcttccataaccttttcaaacagcatcaat
catccacaggggaacaagtgtttcataacacgggcctaggagggaaatgt
ttcatcattccacaccttgactcctttgttgaagctcagtttaaattctt
cgttattagaatttgagagacataatgagatttctacaggaaagcaattg
tgtgttggctatgcatgtgggatctttagcatgaatgcaataaagaatta
agtactgagaggtcttactgtgactgaatgcagaataaaataaatgatga
aatgacaatgaagaaaagatttccttatcagttgctttgtgaatacagaa
acacaatgctttgggttttattttgttttctggtttttggtttgtttgtt
tgttttttttttttctgtctattttctgaaacaattgggaatggaatgtc
cccacaaatgacattaagacaaataatttaaaatacacaaatcattaaag
catgagcaattctgttaaatagctttcccattggtgacccaatctaaaac
agctggagtaactgctgggatagcaataaaaaataaaataaaatttcaaa
caatttcttttcatatttgtaacagattctttattattatttaaggagac
caagtaaaacaaatcagccttatttatgcttatgatttggttctgacaaa
aatcaatcaggcatctacttttccaagttatgcatgcttgtgtaggacga
agagctaataatattctgatgatttctgtgtttaacattggacttctcaa
agctactactcttactcaatggatctttcacaacaatg
gaattccctgctcatctgcctctttcagccttgccctgccctcacaccac
tactgcattttccccagagccttaggtgcaggagttgtgctaaaaatgtt
gcagggtctgggccccccactgtaacttatgaatttgtctttaaattctt
tttatcaacaagattaaaacctgaagaaatagttcagttttgcagtgtct
ctttctgattatgttcttctgggatatctagggatgttctatatggaaga
agtttctatcttcatctatgaatttggttgttcacctatttagtaacttg
ggggagagtttggtatcttgacagaatgaaaggaaacaccaaggggagga
gatactgaagattggtgagtttctttttttactccattaggtttatgaaa
taagttgatctgatgttggatatcgatatttttaaaagccttgctggcta
gaaatgcccaaaccgcccccacacctggttgctgaaagaatgggattttt
aaaaggggaaagggggccaatataaccttttaatggataccttctttatg
caaagacaaaaatcaaagccaaatgtagttttgcattggaagaatacagg
acagtgatgaatagatggtttgtatagaaaagaatgcagatgtttctagt
ggtttttcaaggtgaaaggagaaaatggtatctcggttattaaatattct
atatccactaattacagacactaaacatttacttcagttctcagatactt
atagggttataaacagacagtacagacaaagaaatgcttcctgcattcct
gcacaagcatgatgtttagtcaacctcttgtatccacgtggaaaactggg
tgtgaggagatgcctctcaagtcccagccctcaggaggaagacacaagca
gatctctgggacttatggcatgtcagcctactctacttgctgagattcag
taaatacatacgttatgcaaagcagtgcaaagggctgtgtatgtcgcaga
gtgacctgtgtttcacatgcacagtgtatgtgctctgtcgtgaacaccat
ggtaaacaccacacctgcatggcccaccaactacactggaaattccgagt
tgaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78583150_78584339
seq2: B6Ng01-122C13.b_46_1233 (reverse)

seq1  CATTGTTGTG-AAGACTCAATGAGGTAAGAGTAGTGAAGCTTTGAG-AGT  48
      |||||||||| ||||  || ||| |||||||||||  ||||||||| |||
seq2  CATTGTTGTGAAAGATCCATTGA-GTAAGAGTAGT--AGCTTTGAGAAGT  47

seq1  C--ATAGTTAACACAGGAAAATCATCCAGAATA-TATTAGCTCTTCTGTC  95
      |  ||  | |||||||  ||||||| ||||||| ||||||||||||   |
seq2  CCAATGTTAAACACAG--AAATCAT-CAGAATATTATTAGCTCTTCGTCC  94

seq1  TACAC-AGCATGCATAACCTTTGAAAAGTAGATGGCTGATTGGATTTTTG  144
      ||||| ||||||||||| ||| |||||||||||| |||||| ||||||||
seq2  TACACAAGCATGCATAA-CTTGGAAAAGTAGATGCCTGATT-GATTTTTG  142

seq1  TCAGAACCAAATCATAAGCATTAATTAGGCTGATTTGTTTTACTTTGGTC  194
      ||||||||||||||||||||| ||| ||||||||||||||||| ||||||
seq2  TCAGAACCAAATCATAAGCATAAATAAGGCTGATTTGTTTTAC-TTGGTC  191

seq1  TCCTTAAATAATAATAAAGAATCCTGTTACAAATATG-AAAGAAATTGTT  243
      |||||||||||||||||||||| |||||||||||||| |||||||||| |
seq2  TCCTTAAATAATAATAAAGAAT-CTGTTACAAATATGAAAAGAAATTG-T  239

seq1  TTGAAATTTTATTTTATTTTTTATTGCTAT-CCAGCAGTTACTCCAGCTG  292
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGAAATTTTATTTTATTTTTTATTGCTATCCCAGCAGTTACTCCAGCTG  289

seq1  TTTTAGATTGGGTCACCAATGGG-AAGCTATTTAACAGAATTGCTCATGC  341
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTAGATTGGGTCACCAATGGGAAAGCTATTTAACAGAATTGCTCATGC  339

seq1  TTTAATGATTTGTGTATTTTAAATTATTTGTCTTAATGTCATTTGTGGGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATTTGTGTATTTTAAATTATTTGTCTTAATGTCATTTGTGGGG  389

seq1  ACATTCCATTCCCAATTGTTTCAGAAAATAGACAGAAAAAAAAAAAACAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATTCCCAATTGTTTCAGAAAATAGACAGAAAAAAAAAAAACAA  439

seq1  ACAAACAAACCAAAAACCAGAAAACAAAATAAAACCCAAAGCATTGTGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACCAAAAACCAGAAAACAAAATAAAACCCAAAGCATTGTGTT  489

seq1  TCTGTATTCACAAAGCAACTGATAAGGAAATCTTTTCTTCATTGTCATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTCACAAAGCAACTGATAAGGAAATCTTTTCTTCATTGTCATTT  539

seq1  CATCATTTATTTTATTCTGCATTCAGTCACAGTAAGACCTCTCAGTACTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTATTTTATTCTGCATTCAGTCACAGTAAGACCTCTCAGTACTT  589

seq1  AATTCTTTATTGCATTCATGCTAAAGATCCCACATGCATAGCCAACACAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATTGCATTCATGCTAAAGATCCCACATGCATAGCCAACACAC  639

seq1  AATTGCTTTCCTGTAGAAATCTCATTATGTCTCTCAAATTCTAATAACGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTCCTGTAGAAATCTCATTATGTCTCTCAAATTCTAATAACGA  689

seq1  AGAATTTAAACTGAGCTTCAACAAAGGAGTCAAGGTGTGGAATGATGAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAACTGAGCTTCAACAAAGGAGTCAAGGTGTGGAATGATGAAA  739

seq1  CATTTCCCTCCTAGGCCCGTGTTATGAAACACTTGTTCCCCTGTGGATGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTCCTAGGCCCGTGTTATGAAACACTTGTTCCCCTGTGGATGA  789

seq1  TTGATGCTGTTTGAAAAGGTTATGGAAGCTTTAGGAGGTGGAGCCCTGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTGTTTGAAAAGGTTATGGAAGCTTTAGGAGGTGGAGCCCTGCT  839

seq1  GGAGATATCACTGAATCCTGGTTCGAGGATTTATATCTTGGTGCTGTTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATCACTGAATCCTGGTTCGAGGATTTATATCTTGGTGCTGTTTT  889

seq1  CTATTATCTCTATCTGCTTTCTATGTATTGATTGGCAAGCTTGCTTCTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCTCTATCTGCTTTCTATGTATTGATTGGCAAGCTTGCTTCTCT  939

seq1  TAATTCTAGGCTTTCCCTAACTGATGGAATACCTTGTCTTCATGGGAAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGGCTTTCCCTAACTGATGGAATACCTTGTCTTCATGGGAAGA  989

seq1  AGACAAAATAAAACCATCTCATTCTATATTTACTTTTGTAAGACTGGTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATAAAACCATCTCATTCTATATTTACTTTTGTAAGACTGGTCT  1039

seq1  TGCTTTACTTTCATCACATCAACAGAGAAGAAAAAGAGAACTCAAGTTCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACTTTCATCACATCAACAGAGAAGAAAAAGAGAACTCAAGTTCT  1089

seq1  CCAGGGGAAATAACCATTAATGAAGACAATTTTTAAGTAAATAGTACCAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAAATAACCATTAATGAAGACAATTTTTAAGTAAATAGTACCAA  1139

seq1  GATACAGTATTGTTACCAAAGGAACTGGGAGTGAGATTACATGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTATTGTTACCAAAGGAACTGGGAGTGAGATTACATGGAATTC  1188

seq1: chr6_78492184_78493319
seq2: B6Ng01-122C13.g_68_1174

seq1  GAATTCCCTGCTCATCTGCCTCTTTCAGCCTTGCCCTGCCCTCACACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCTCATCTGCCTCTTTCAGCCTTGCCCTGCCCTCACACCAC  50

seq1  TACTGCATTTTCCCCAGAGCCTTAGGTGCAGGAGTTGTGCTAAAAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATTTTCCCCAGAGCCTTAGGTGCAGGAGTTGTGCTAAAAATGTT  100

seq1  GCAGGGTCTGGGCCCCCCACTGTAACTTATGAATTTGTCTTTAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCTGGGCCCCCCACTGTAACTTATGAATTTGTCTTTAAATTCTT  150

seq1  TTTATCAACAAGATTAAAACCTGAAGAAATAGTTCAGTTTTGCAGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACAAGATTAAAACCTGAAGAAATAGTTCAGTTTTGCAGTGTCT  200

seq1  CTTTCTGATTATGTTCTTCTGGGATATCTAGGGATGTTCTATATGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATTATGTTCTTCTGGGATATCTAGGGATGTTCTATATGGAAGA  250

seq1  AGTTTCTATCTTCATCTATGAATTTGGTTGTTCACCTATTTAGTAACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATCTTCATCTATGAATTTGGTTGTTCACCTATTTAGTAACTTG  300

seq1  GGGGAGAGTTTGGTATCTTGACAGAATGAAAGGAAACACCAAGGGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGTTTGGTATCTTGACAGAATGAAAGGAAACACCAAGGGGAGGA  350

seq1  GATACTGAAGATTGGTGAGTTTCTTTTTTTACTCCATTAGGTTTATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAGATTGGTGAGTTTCTTTTTTTACTCCATTAGGTTTATGAAA  400

seq1  TAAGTTGATCTGATGTTGGATATCGATATTTTTAAAAGCCTTGCTGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGATCTGATGTTGGATATCGATATTTTTAAAAGCCTTGCTGGCTA  450

seq1  GAAATGCCCAAACCGCCCCCACACCTGGTTGCTGAAAGAATGGGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCAAACCGCCCCCACACCTGGTTGCTGAAAGAATGGGATTTTT  500

seq1  AAAAGGGGAAAGGGGGCCAATATAACCTTTTAATGGATACCTTCTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGAAAGGGGGCCAATATAACCTTTTAATGGATACCTTCTTTATG  550

seq1  CAAAGACAAAAATCAAAGCCAAATGTAGTTTTGCATTGGAAGAATACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAAAATCAAAGCCAAATGTAGTTTTGCATTGGAAGAATACAGG  600

seq1  ACAGTGATGAATAGATGGTTTGTATAGAAAAGAATGCAGATGTTTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATGAATAGATGGTTTGTATAGAAAAGAATGCAGATGTTTCTAGT  650

seq1  GGTTTTTCAAGGTGAAAGGAGAAAATGGTATCTCGGTTATTAAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCAAGGTGAAAGGAGAAAATGGTATCTCGGTTATTAAATATTCT  700

seq1  ATATCCACTAATTACAGACACTAAACATTTACTTCAGGTTCTCAGGATAC  750
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATATCCACTAATTACAGACACTAAACATTTACTTCA-GTTCTCA-GATAC  748

seq1  TTATAGGGTTATAAACAGACAGTACAGACAAAGAAATGCTTCCTGCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGTTATAAACAGACAGTACAGACAAAGAAATGCTTCCTGCATTC  798

seq1  CTGCACAAGCATGATGTTTAGTCAACCTCTTGTATCCACGTGGAAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGCATGATGTTTAGTCAACCTCTTGTATCCACGTGGAAAACTG  848

seq1  GGTGTGAGGAGATGCCTCTCAAGTCCCAGCCCTCAGGAGGAAGACACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGGAGATGCCTCTCAAGTCCCAGCCCTCAGGAGGAAGACACAAG  898

seq1  CAGATCTCTGGGACTTATGGCATGTCAGCCTACTCTACTTGCTGAGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGGGACTTATGGCATGTCAGCCTACTCTACTTGCTGAGATTC  948

seq1  AGGTAAATACAATACGTTATGCCAAAAGCAAGTGCAAAGGGCTGGTGTAA  1000
      | |||||||| |||||||||||  ||||| ||||||||||||| |||| |
seq2  A-GTAAATAC-ATACGTTATGC--AAAGC-AGTGCAAAGGGCT-GTGT-A  991

seq1  TGTCGCCAAGAGTGACCTTGTGTTTCAACATGCACAAGTGTATGTGCCTC  1050
      ||||||  ||||||||| |||||||| |||||||| |||||||||| |||
seq2  TGTCGC--AGAGTGACC-TGTGTTTC-ACATGCAC-AGTGTATGTG-CTC  1035

seq1  TGTCCGTGAACACACAT-GTAAACACACACACCTGCACATGGCCCACACA  1099
      ||| ||||||||| ||| |||||||| ||||||||  ||||||||||   
seq2  TGT-CGTGAACAC-CATGGTAAACAC-CACACCTG--CATGGCCCAC---  1077

seq1  AAACTACAACTGGGAAATTCCCAGAGTTCTAGAACCA  1136
       |||||| ||| |||||||||  |||||   ||||||
seq2  CAACTAC-ACT-GGAAATTCC--GAGTT---GAACCA  1107