BAC Information

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BAC

Clone NameB6Ng01-122H21
Chromosome6 (Build37)
Map Location 66,332,501 - 66,333,682
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H21.bB6Ng01-122H21.g
ACCDH925901DH925902
length1,1711,182
definitionDH925901|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H21, 5' end.DH925902|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaacccacaaatactcacaagtgacagaaatgatcaacacaaa
tggtttcccattcacaccatggaacaggagacttggaccagtctatgcac
agcatctgcgggactatcttttaaattaacagtggaacaaaaagaaaatg
caggcaaagttctgttcttgtaaagtcagagaagagtgaaaactgtagtt
tttaaaatgtaactgtacaggatgatttataacccaaaatttatgactct
aaaggctattaaatgggtgtgggagtctcaaaggagactgcagaggtatc
tatttcctggcagtgtgtgaggagtctatgaagcaagagttttatgagag
cagccaaatgtgctttctctttccattgcttttcttgaggccagcagaac
tgaagagagtagcttgctcctcaaacaggacagttaactgaagtaatgct
tgccttatacgctgtgaaactgggcagagttgggcagttgtgcttcatcc
tagagctgactttacagaaacacagagatactgatgaactaggggagtca
ggacacacattaaaattattgcttctgagttcaagataatcacatttaaa
catgaactctgacttcggccaacattagagaggtaaaagcccagaaaaga
acggtagaagtgttgatttgtctaaatgagcaggctctgctacagaagac
tgtcctggtttgttttgttcacaaggtggaggtttgaaaactacagcaaa
catagaagtaattgagagtatgtgaactcaatggcctctaccaattgtct
ccaattagagaccagagtcggatgaatcaaacatttgttatatttgaagt
gtaggcagaagccattataatccagtgtacatttgccagttttctgattt
gaggacctccattatccagttgtcctgctaaatgtttgcatttcgtatgt
gaaaaatatgtatttgcatatctgtacagtcataattggcactatatctt
gctccactgcatatgatggcatgtgttcgacaagtgagcaaacccttcag
ttataaacaacattcacatgactttgacttcagcccgagtttacgctttg
tgcatgtaccttgcccaaccttttgccatgtgatttaagccagtcaacca
acagggtggaaaatcatttga
gaattcactatggaggtttataattgctcttctaaattctgtttcctttg
ttcatctatgtggttcttattggtaaacatttctacaagttttggagaga
agatgctggcttcatctttcatattgttggtatttctgagaggagatctg
tgcatgtggacattgttatttttgagtttgttattgaaggagcagatttg
gcagaagagaagaactgtgtgtatagtgaattatgtctagaggttagaga
tgtcttaagaggaatgaggtcaggtggatagaggtaacagacgtgcttcc
tgttccaagatataatgtgagcttagatagatatcttatttacttttcta
ttggtgtaaagagatatcatgaccaaggcaacacataaaaggaaacatct
aactgttggtgccttgtctacatttgcagaaggtcaccaattatcatcat
gacagggagcattattgaccagcagtcaggcatagcatttgaacagtcac
tgagagctctcatctgactcataagttataggccaagagagacagtgaga
ttggtgtatacttttgaaacctcaaagcctatcccaagtgacatacctcc
tctatcaagaccacatctactacaagcaggccaaacctcttaatcccaaa
cacttaacaggagaccaagaattcagacatataggcctatggagactttc
tcattcaaacctccacattccgtttcctagccccacaggattgtagccat
attataaggcatgttgtatttagtcctgcttcaaaaattcccatagatta
ttttttcaaagttcagagtccatgtcttctgaaatgcaaggcaatctcac
aattataaaaaaagtttttctacttcaagtaaaaggaaaaacaaagaaaa
tcacatatttagagcaaacaatggtacagaatatgcatgaacattcgaag
ggacgaggcatagtgagaaatactgtacccaattgtgcaagttcaaatcg
tgtgtcctgtgtctaagtaccacataatgtattggtctccattcagctgg
taattgaaggtactataccttgggctgactcatatcgtcagcccacatat
gctagtatccaatgacttgaatcctacaattgtccaatacagactatctc
ctagggatcacacacagtggatttcttagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66332501_66333682
seq2: B6Ng01-122H21.b_48_1218

seq1  GAATTCAGAACCCACAAATACTCACAAGTGACAGAAATGATCAACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACCCACAAATACTCACAAGTGACAGAAATGATCAACACAAA  50

seq1  TGGTTTCCCATTCACACCATGGAACAGGAGACTTGGACCAGTCTATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCCATTCACACCATGGAACAGGAGACTTGGACCAGTCTATGCAC  100

seq1  AGCATCTGCGGGACTATCTTTTAAATTAACAGTGGAACAAAAAGAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCGGGACTATCTTTTAAATTAACAGTGGAACAAAAAGAAAATG  150

seq1  CAGGCAAAGTTCTGTTCTTGTAAAGTCAGAGAAGAGTGAAAACTGTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGTTCTGTTCTTGTAAAGTCAGAGAAGAGTGAAAACTGTAGTT  200

seq1  TTTAAAATGTAACTGTACAGGATGATTTATAACCCAAAATTTATGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTAACTGTACAGGATGATTTATAACCCAAAATTTATGACTCT  250

seq1  AAAGGCTATTAAATGGGTGTGGGAGTCTCAAAGGAGACTGCAGAGGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATTAAATGGGTGTGGGAGTCTCAAAGGAGACTGCAGAGGTATC  300

seq1  TATTTCCTGGCAGTGTGTGAGGAGTCTATGAAGCAAGAGTTTTATGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGGCAGTGTGTGAGGAGTCTATGAAGCAAGAGTTTTATGAGAG  350

seq1  CAGCCAAATGTGCTTTCTCTTTCCATTGCTTTTCTTGAGGCCAGCAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAATGTGCTTTCTCTTTCCATTGCTTTTCTTGAGGCCAGCAGAAC  400

seq1  TGAAGAGAGTAGCTTGCTCCTCAAACAGGACAGTTAACTGAAGTAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGTAGCTTGCTCCTCAAACAGGACAGTTAACTGAAGTAATGCT  450

seq1  TGCCTTATACGCTGTGAAACTGGGCAGAGTTGGGCAGTTGTGCTTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATACGCTGTGAAACTGGGCAGAGTTGGGCAGTTGTGCTTCATCC  500

seq1  TAGAGCTGACTTTACAGAAACACAGAGATACTGATGAACTAGGGGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGACTTTACAGAAACACAGAGATACTGATGAACTAGGGGAGTCA  550

seq1  GGACACACATTAAAATTATTGCTTCTGAGTTCAAGATAATCACATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACATTAAAATTATTGCTTCTGAGTTCAAGATAATCACATTTAAA  600

seq1  CATGAACTCTGACTTCGGCCAACATTAGAGAGGTAAAAGCCCAGAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTCTGACTTCGGCCAACATTAGAGAGGTAAAAGCCCAGAAAAGA  650

seq1  ACGGTAGAAGTGTTGATTTGTCTAAATGAGCAGGCTCTGCTACAGAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGAAGTGTTGATTTGTCTAAATGAGCAGGCTCTGCTACAGAAGAC  700

seq1  TGTCCTGGTTTGTTTTGTTCACAAGGTGGAGGTTTGAAAACTACAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGTTTGTTTTGTTCACAAGGTGGAGGTTTGAAAACTACAGCAAA  750

seq1  CATAGAAGTAATTGAGAGTATGTGAACTCAATGGCCTCTACCAATTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGTAATTGAGAGTATGTGAACTCAATGGCCTCTACCAATTGTCT  800

seq1  CCAATTAGAGACCAGAGTCGGATGAATCAAACATTTGTTATATTTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAGAGACCAGAGTCGGATGAATCAAACATTTGTTATATTTGAAGT  850

seq1  GTAGGCAGAAGCCATTATAATCCAGTGTACATTTGCCAGTTTTCTGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGAAGCCATTATAATCCAGTGTACATTTGCCAGTTTTCTGATTT  900

seq1  GAGGACCTCCATTATCCAGTTGTCCTGCTAAAATGTTTGCATTTCGTATG  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGGACCTCCATTATCCAGTTGTCCTGCT-AAATGTTTGCATTTCGTATG  949

seq1  TGAAAAATATGTATTTGCATATCTGTAACAGTCATAATTGGCACTATATC  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAAAATATGTATTTGCATATCTGT-ACAGTCATAATTGGCACTATATC  998

seq1  TTGCTCCCAACTGCATATGATGGCATGTGTTCGACAAGTGAGCAAACCCT  1050
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCC--ACTGCATATGATGGCATGTGTTCGACAAGTGAGCAAACCCT  1046

seq1  TCAGTTATAAACAACATTCACAATGACTTTGACTTCAGCCCGAGTCTACG  1100
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  TCAGTTATAAACAACATTCAC-ATGACTTTGACTTCAGCCCGAGTTTACG  1095

seq1  CTTTGTGCATGTTACTTGCCCAGACCTTTCTGCACATGTGATTTAAGCCA  1150
      ||||||||||||  |||||||| |||||| ||| ||||||||||||||||
seq2  CTTTGTGCATGTACCTTGCCCA-ACCTTT-TGC-CATGTGATTTAAGCCA  1142

seq1  GTC-ACCAACAAGGGTGAAAAATCACATTTTGA  1182
      ||| |||||| |||||| |||||||   |||||
seq2  GTCAACCAAC-AGGGTGGAAAATCA---TTTGA  1171