BAC Information

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BAC

Clone NameB6Ng01-123C05
Chromosome6 (Build37)
Map Location 97,566,439 - 97,713,240
singlet/doubletdoublet
Overlap geneFrmd4b, LOC641241
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC100043692, Mitf, Gm765, LOC666019, LOC665963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C05.bB6Ng01-123C05.g
ACCDH926389DH926390
length1,104655
definitionDH926389|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C05, 5' end.DH926390|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,712,129 - 97,713,240)(97,566,439 - 97,567,093)
sequence
gaattctgttctgagcttacaagatcacaagtcacatttccttatgtggg
gggtgtgacacgtgttccaggacaggaatcttgcagggagcatggagtcg
cctaagtctcaggtgtgtgcccaccgaatctccgggtctcaacctgctct
accttaccaagcttcctggcacacaagttttactgtcccacatgcattca
gtattgaattataaatatgttacaacatcaaatccttcccttaccccact
cccattgaagagggttagcaagtctgtgaactccaggaataaagtgtgaa
tgctgaccatgtgctctcaggcaagtccctgaagctctactgccttagcg
tcctgatttatagggactgaagagatggttcagtgattaggaacatcggt
tgtttttccacaggtcctgagtccagttcccagaacctacatggtggctc
acaaccatctataactgtagccccaggggatcttatgtccctttctcata
catatttagaagaatactcatacacataaaataaataaatcttaaaaaat
gtaatgaataaaagcttttttttccttataaagtgggaccatagtaggca
caactgggaacacagtaggtaggtagaactgagcagccattgccaagcat
taagctttaaggcggtaaaatgcatgcaccaatatgtgttcattattacc
tttccagtgggagaaaagaatctcagagactttaggtacaaatgtgaata
aagaccctgtctaaaggcaggactgaagagaaacacaactgctagaattt
ccatgaaaaggaagcgtgtacagagaaaggagggaaggagaaggaacgga
atataagcaaaattaaccatctcctcatctctgaatatgtgcttaatcat
attaccatcaagaagataaattcaacagaataaatagtgatagaatttct
gggaggacagaaagggcaggaagaaataaccaacaacatacctcatgttc
ctaccaccatgaatttcctgccagagatgcaccctcaaaccatgaagcag
gatattcttccccattaattgctttcatcagatatttggtcaagcactga
gcaa
gaattcttagaccagaggaagactggagcccagctcttccctctttgtaa
agggacctagcactagtcagcagcatctttaaaagtgcaggaagcccttt
gcaaaggaagacgttggccactagtccaaacaaaacagcatttctcaaat
tagggttaaatgtgccttctccgatgaaaataaaaagtgaaatgctccag
aaaatggacagagagcagttcacacgcacacagcctctccaatacaggcg
cgcttaggatgtgacacgcctatttacaaagggtggccaagccaaaccct
ggacgtcctcagctaaggccagggacccctccctcagcttttcaccacct
tcggatggcttccccggacagaagtgtctgggattcaacgattcatctcc
ctacctcccaccaaagcaaaaagcgcgtggtccaacgcggcgtgttctca
aaccccaccagcgtcaaagcatcagacccgccaaacttcctgtcactaca
ctgccagagccaccaaagagcggcgccaagtgcctaggaactccagtcca
ggctgaaccagcccgggagctttggggcggggcttcccggtggcaggaga
ttggggaccagctctgcgggtccccaacctgcgcgcgccggggggtgggg
ggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_97712129_97713240
seq2: B6Ng01-123C05.b_45_1148 (reverse)

seq1  TTGCTCAGTGCTGTGACCAAATATCTGATGAAAGCAATTTAATGGGGGAA  50
      |||||||||||| |||||||||||||||||||||||| ||||| ||||||
seq2  TTGCTCAGTGCT-TGACCAAATATCTGATGAAAGCAA-TTAAT-GGGGAA  47

seq1  GAATTATCTTGCTTCATGGTTTGAGGGTGCATCTCTTGGCAGGAAATTCA  100
      ||| |||| |||||||||||||||||||||||||| ||||||||||||||
seq2  GAA-TATCCTGCTTCATGGTTTGAGGGTGCATCTC-TGGCAGGAAATTCA  95

seq1  TGGTGGTAGGAACATGGGGTATGTTGTTGGTTATTTCTTCCCTGCCCCTT  150
      |||||||||||||||| |||||||||||||||||||||| |||| |||||
seq2  TGGTGGTAGGAACATGAGGTATGTTGTTGGTTATTTCTT-CCTG-CCCTT  143

seq1  TCTTGTCCTCCCAGAAATTCTATCACTATTTATTCTGTTGAATTTATCTT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGTCCTCCCAGAAATTCTATCACTATTTATTCTGTTGAATTTATCTT  192

seq1  CTTGATGGTAATATGATTAAGCACATATTCAGAGATGAGGAGATGGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGTAATATGATTAAGCACATATTCAGAGATGAGGAGATGGTTAA  242

seq1  TTTTGCTTATATTCCGTTCCTTCTCCTTCCCTCCTTTCTCTGTACACGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTATATTCCGTTCCTTCTCCTTCCCTCCTTTCTCTGTACACGCT  292

seq1  TCCTTTTCATGGAATTTCTAGCAGTTGTGTTTCTCTTCAGTCCTGCCTTT  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCATGGAAATTCTAGCAGTTGTGTTTCTCTTCAGTCCTGCCTTT  342

seq1  AGACAGGGTCTTTATTCACATTTGTACCTAAAGTCTCTGAGATTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTCTTTATTCACATTTGTACCTAAAGTCTCTGAGATTCTTTTC  392

seq1  TCCCACTGGAAAGGTAATAATGAACACATATTGGTGCATGCATTTTACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGGAAAGGTAATAATGAACACATATTGGTGCATGCATTTTACCG  442

seq1  CCTTAAAGCTTAATGCTTGGCAATGGCTGCTCAGTTCTACCTACCTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGCTTAATGCTTGGCAATGGCTGCTCAGTTCTACCTACCTACTG  492

seq1  TGTTCCCAGTTGTGCCTACTATGGTCCCACTTTATAAGGAAAAAAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGTTGTGCCTACTATGGTCCCACTTTATAAGGAAAAAAAAGCT  542

seq1  TTTATTCATTACATTTTTTAAGATTTATTTATTTTATGTGTATGAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTACATTTTTTAAGATTTATTTATTTTATGTGTATGAGTATT  592

seq1  CTTCTAAATATGTATGAGAAAGGGACATAAGATCCCCTGGGGCTACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAATATGTATGAGAAAGGGACATAAGATCCCCTGGGGCTACAGTT  642

seq1  ATAGATGGTTGTGAGCCACCATGTAGGTTCTGGGAACTGGACTCAGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGTTGTGAGCCACCATGTAGGTTCTGGGAACTGGACTCAGGACC  692

seq1  TGTGGAAAAACAACCGATGTTCCTAATCACTGAACCATCTCTTCAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAACAACCGATGTTCCTAATCACTGAACCATCTCTTCAGTCCC  742

seq1  TATAAATCAGGACGCTAAGGCAGTAGAGCTTCAGGGACTTGCCTGAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCAGGACGCTAAGGCAGTAGAGCTTCAGGGACTTGCCTGAGAGC  792

seq1  ACATGGTCAGCATTCACACTTTATTCCTGGAGTTCACAGACTTGCTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTCAGCATTCACACTTTATTCCTGGAGTTCACAGACTTGCTAACC  842

seq1  CTCTTCAATGGGAGTGGGGTAAGGGAAGGATTTGATGTTGTAACATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAATGGGAGTGGGGTAAGGGAAGGATTTGATGTTGTAACATATTT  892

seq1  ATAATTCAATACTGAATGCATGTGGGACAGTAAAACTTGTGTGCCAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAATACTGAATGCATGTGGGACAGTAAAACTTGTGTGCCAGGAA  942

seq1  GCTTGGTAAGGTAGAGCAGGTTGAGACCCGGAGATTCGGTGGGCACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTAAGGTAGAGCAGGTTGAGACCCGGAGATTCGGTGGGCACACAC  992

seq1  CTGAGACTTAGGCGACTCCATGCTCCCTGCAAGATTCCTGTCCTGGAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTAGGCGACTCCATGCTCCCTGCAAGATTCCTGTCCTGGAACA  1042

seq1  CGTGTCACACCCCCCACATAAGGAAATGTGACTTGTGATCTTGTAAGCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCACACCCCCCACATAAGGAAATGTGACTTGTGATCTTGTAAGCTC  1092

seq1  AGAACAGAATTC  1112
      ||||||||||||
seq2  AGAACAGAATTC  1104

seq1: chr6_97566439_97567093
seq2: B6Ng01-123C05.g_68_722

seq1  GAATTCTTAGACCAGAGGAAGACTGGAGCCCAGCTCTTCCCTCTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGACCAGAGGAAGACTGGAGCCCAGCTCTTCCCTCTTTGTAA  50

seq1  AGGGACCTAGCACTAGTCAGCAGCATCTTTAAAAGTGCAGGAAGCCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTAGCACTAGTCAGCAGCATCTTTAAAAGTGCAGGAAGCCCTTT  100

seq1  GCAAAGGAAGACGTTGGCCACTAGTCCAAACAAAACAGCATTTCTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAGACGTTGGCCACTAGTCCAAACAAAACAGCATTTCTCAAAT  150

seq1  TAGGGTTAAATGTGCCTTCTCCGATGAAAATAAAAAGTGAAATGCTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTAAATGTGCCTTCTCCGATGAAAATAAAAAGTGAAATGCTCCAG  200

seq1  AAAATGGACAGAGAGCAGTTCACACGCACACAGCCTCTCCAATACAGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACAGAGAGCAGTTCACACGCACACAGCCTCTCCAATACAGGCG  250

seq1  CGCTTAGGATGTGACACGCCTATTTACAAAGGGTGGCCAAGCCAAACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGGATGTGACACGCCTATTTACAAAGGGTGGCCAAGCCAAACCCT  300

seq1  GGACGTCCTCAGCTAAGGCCAGGGACCCCTCCCTCAGCTTTTCACCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTCCTCAGCTAAGGCCAGGGACCCCTCCCTCAGCTTTTCACCACCT  350

seq1  TCGGATGGCTTCCCCGGACAGAAGTGTCTGGGATTCAACGATTCATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATGGCTTCCCCGGACAGAAGTGTCTGGGATTCAACGATTCATCTCC  400

seq1  CTACCTCCCACCAAAGCAAAAAGCGCGTGGTCCAACGCGGCGTGTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCACCAAAGCAAAAAGCGCGTGGTCCAACGCGGCGTGTTCTCA  450

seq1  AACCCCACCAGCGTCAAAGCATCAGACCCGCCAAACTTCCTGTCACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACCAGCGTCAAAGCATCAGACCCGCCAAACTTCCTGTCACTACA  500

seq1  CTGCCAGAGCCACCAAAGAGCGGCGCCAAGTGCCTAGGAACTCCAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGCCACCAAAGAGCGGCGCCAAGTGCCTAGGAACTCCAGTCCA  550

seq1  GGCTGAACCAGCCCGGGAGCTTTGGGGCGGGGCTTCCCGGTGGCAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACCAGCCCGGGAGCTTTGGGGCGGGGCTTCCCGGTGGCAGGAGA  600

seq1  TTGGGGACCAGCTCTGCGGGTCCCCAACCTGCGCGCGCCGGGGGGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACCAGCTCTGCGGGTCCCCAACCTGCGCGCGCCGGGGGGTGGGG  650

seq1  GGTGG  655
      |||||
seq2  GGTGG  655