BAC Information

Click to search

BAC

Clone NameB6Ng01-124E24
Chromosome6 (Build37)
Map Location 117,049,406 - 117,252,697
singlet/doubletdoublet
Overlap geneCxcl12, LOC213422, EG640142
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E24.bB6Ng01-124E24.g
ACCDH927252DH927253
length1,1891,098
definitionDH927252|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E24, 5' end.DH927253|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,251,487 - 117,252,697)(117,049,406 - 117,050,504)
sequence
gaattcatcattaccagacttgcattaagaaataattatcaacagtagag
gtgaaactatctcataggggaagaatataaatagaagagggtaatgaaat
agaaaatacagatttatgattagataaaagtgaaaatgtaaaatgaaact
gtaaagcaatgaaatcaaatagttgtttatgagcgaaataaacacaagtt
aaagtgctggcaaatacataaaatttatccttggtatgtgagtcagagct
ttgtatgtttcagtctctatggaaaccactaaaaatagtgaaaaactgta
ttatgaaaaaggtaatagaagaaaaactgaatgatttaaattaaactaaa
ataaggcatggaaataggaaaatttaagcatatattattcataaaaaata
gaaaaataacaatagtgaatgttaagtgaattgtctagtctacttaaaac
aacacttgacatattaaaaaaaagaaacctatgtactgaaaatttggagt
gtaccatatggagtttaaatatatctcaatcataagtttatgcaatatat
attccatcagttctatatgggctaaagatttaactgaaacaccatagttt
gtagaaaataattaaatttattttatcataaaaatgaattaggaagcatg
tccttaccagtatgcaaaaattactttcccttgtgaatttaattgactag
acactcatgactttcacatttgcaaacattatatttttcaatgtaatgta
gaaatagaggaaataaggaggtaaggcatttcattctaaatgggcaaact
gtctccacacaggcactacagccagagagcacaagcaaagggtcgatggt
aagcacctttgggaacaggacggtaacccagggaatgagtgtttggtctt
ctaagtctcagccttgagacttgtcatctactgttctagtggtgagagcc
cagcagttaccttttcttgtcttagcaatatcctaggctttctgcctatt
tcttgctttcttattgcttttcagttaggagaagaaggcaagtgtcctcc
ccttcggagtgcgtcactttgcttacgcactttcatgcctcaccaacaag
gacaaccttagaacatgtgaagttagtgcataccttcttgaaagggtgtt
catgttatccgtgagataggctcatggatctttccagga
gaattctctcacccagaactctcaacattcaaacgcttaacagaaaagtc
cctcctgggtaactgacagtaaaacaacatacctagaactcgttctgttc
ctagtcctgggacactaaaatcttgttctagtgtcttctaccaatagccg
aggccccacctaggtggcttgcaacttctcaccccaacaacctgctcctg
aatgctctcattattcctttcctctctgtgtagcattccagcctgcgaag
tttgcctcaacttcccagaatccattagagacaccctgactcgagctcct
gcagggccctgtggtttatcccccctccgaacagatctgactggattcag
attccttagtgcatccagatacctccctagaacatcaactccaggaaatg
gccaagtctcctctgcctctattccctgggtactcaaaacaaatacatgg
tgaatagctgagtgtgtgtatcagcgatttgacgctgtaaagacatccag
ggcgaaaaggactgatagctaataaaacaatgagcgatgctgaaagggct
tcaacgccgatcagatgtgctctcccgaggaatctctccacgcacgtgtg
gagggaaaagccttgagagcgtcaccaaacatttggcagcaagctcagtg
ggcatttcctccctctgctgagaactggctggctctgctgtaactaaggc
ggagtgacaggcagctccatctgtctgcactccaaatcctgggttggctg
cggaccctccaagagttgactttagttttcttgacagtacaaatgtattc
ttctacttatggcaagacccatggatttctttgccatattcttcctcaat
agttgctagaaaaataggaaaagccttgatcagtgttttgaatttacagt
gatgtcaccgggaaaaataagggtttaaacactagcacctacttaaaagc
atcttttctcaagatctgcaattgtagatagattcctcccacagcttgct
tccaggtttgattgccccaaggcctgggaaataataacatgtattattct
ctgtgcctttgggatgtaccctccccattgccaaaatcccactctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117251487_117252697
seq2: B6Ng01-124E24.b_44_1232 (reverse)

seq1  TCCTGGAAAGATTCATTGGAACCTAACTTCATCAGGTTTTAACCACTGAG  50
      |||||||||||| |||  || |||| |    ||| |   ||||   ||| 
seq2  TCCTGGAAAGATCCAT--GAGCCTATC----TCACG-GATAAC--ATGA-  40

seq1  CCACCTCTTCAGAAAGAGTAATTGCAACCTAACTTCACTGTGTTCTTAGG  100
       ||||  ||||  ||| |||  ||||  ||||||||||  ||||| || |
seq2  ACACCCTTTCAAGAAG-GTA--TGCA--CTAACTTCAC-ATGTTC-TAAG  83

seq1  GTTGTCACTTTGTTGGTG-GGCACTGAAGTGCTGTAGC-AAGTGACGGCA  148
      |||||  | ||||||||| ||||   ||||||   ||| ||||||| |||
seq2  GTTGT--CCTTGTTGGTGAGGCATGAAAGTGCGTAAGCAAAGTGAC-GCA  130

seq1  CTTCCGAAGGGGA-GACACTGCCCTTCTTCTCCTAACTGAAAAGCAATAA  197
      | ||||||||||| ||||||  ||||||||||||||||||||||||||||
seq2  C-TCCGAAGGGGAGGACACTTGCCTTCTTCTCCTAACTGAAAAGCAATAA  179

seq1  GAAAAGCAGGAATTAGGCAGAAAGCCTAGGATATTGCTAAGACAAGAAAA  247
      | |||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  G-AAAGCAAGAAATAGGCAGAAAGCCTAGGATATTGCTAAGACAAGAAAA  228

seq1  GGTAACTGCTTGGCTTCTCCACCAACTAGAACAGTAGATGACAAGTCTCA  297
      |||||||||| ||| ||| |||| ||||||||||||||||||||||||||
seq2  GGTAACTGCTGGGC-TCT-CACC-ACTAGAACAGTAGATGACAAGTCTCA  275

seq1  AGGCTGAGACTTAGAAGACCAAACACTCATTCCCTGGGTTACCGTCCTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGACTTAGAAGACCAAACACTCATTCCCTGGGTTACCGTCCTGT  325

seq1  TCCCAAAGGTGCTTACCATCGACCCTTTGCTTGTGCTCTCTGGCTGTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGTGCTTACCATCGACCCTTTGCTTGTGCTCTCTGGCTGTAGT  375

seq1  GCCTGTGTGGAGACAGTTTGCCCATTTAGAATGAAATGCCTTACCTCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGGAGACAGTTTGCCCATTTAGAATGAAATGCCTTACCTCCTT  425

seq1  ATTTCCTCTATTTCTACATTACATTGAAAAATATAATGTTTGCAAATGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTATTTCTACATTACATTGAAAAATATAATGTTTGCAAATGTG  475

seq1  AAAGTCATGAGTGTCTAGTCAATTAAATTCACAAGGGAAAGTAATTTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATGAGTGTCTAGTCAATTAAATTCACAAGGGAAAGTAATTTTTG  525

seq1  CATACTGGTAAGGACATGCTTCCTAATTCATTTTTATGATAAAATAAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGTAAGGACATGCTTCCTAATTCATTTTTATGATAAAATAAATT  575

seq1  TAATTATTTTCTACAAACTATGGTGTTTCAGTTAAATCTTTAGCCCATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTTCTACAAACTATGGTGTTTCAGTTAAATCTTTAGCCCATAT  625

seq1  AGAACTGATGGAATATATATTGCATAAACTTATGATTGAGATATATTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGATGGAATATATATTGCATAAACTTATGATTGAGATATATTTAA  675

seq1  ACTCCATATGGTACACTCCAAATTTTCAGTACATAGGTTTCTTTTTTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATATGGTACACTCCAAATTTTCAGTACATAGGTTTCTTTTTTTTA  725

seq1  ATATGTCAAGTGTTGTTTTAAGTAGACTAGACAATTCACTTAACATTCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCAAGTGTTGTTTTAAGTAGACTAGACAATTCACTTAACATTCAC  775

seq1  TATTGTTATTTTTCTATTTTTTATGAATAATATATGCTTAAATTTTCCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTATTTTTCTATTTTTTATGAATAATATATGCTTAAATTTTCCTA  825

seq1  TTTCCATGCCTTATTTTAGTTTAATTTAAATCATTCAGTTTTTCTTCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGCCTTATTTTAGTTTAATTTAAATCATTCAGTTTTTCTTCTAT  875

seq1  TACCTTTTTCATAATACAGTTTTTCACTATTTTTAGTGGTTTCCATAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTCATAATACAGTTTTTCACTATTTTTAGTGGTTTCCATAGAG  925

seq1  ACTGAAACATACAAAGCTCTGACTCACATACCAAGGATAAATTTTATGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACATACAAAGCTCTGACTCACATACCAAGGATAAATTTTATGTA  975

seq1  TTTGCCAGCACTTTAACTTGTGTTTATTTCGCTCATAAACAACTATTTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGCACTTTAACTTGTGTTTATTTCGCTCATAAACAACTATTTGA  1025

seq1  TTTCATTGCTTTACAGTTTCATTTTACATTTTCACTTTTATCTAATCATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGCTTTACAGTTTCATTTTACATTTTCACTTTTATCTAATCATA  1075

seq1  AATCTGTATTTTCTATTTCATTACCCTCTTCTATTTATATTCTTCCCCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTATTTTCTATTTCATTACCCTCTTCTATTTATATTCTTCCCCTA  1125

seq1  TGAGATAGTTTCACCTCTACTGTTGATAATTATTTCTTAATGCAAGTCTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTTTCACCTCTACTGTTGATAATTATTTCTTAATGCAAGTCTG  1175

seq1  GTAATGATGAATTC  1211
      ||||||||||||||
seq2  GTAATGATGAATTC  1189

seq1: chr6_117049406_117050504
seq2: B6Ng01-124E24.g_66_1163

seq1  GAATTCTCTCACCCAGAACTCTCAACATTCAAACGCTTAACAGAAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACCCAGAACTCTCAACATTCAAACGCTTAACAGAAAAGTC  50

seq1  CCTCCTGGGTAACTGACAGTAAAACAACATACCTAGAACTCGTTCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGTAACTGACAGTAAAACAACATACCTAGAACTCGTTCTGTTC  100

seq1  CTAGTCCTGGGACACTAAAATCTTGTTCTAGTGTCTTCTACCAATAGCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTGGGACACTAAAATCTTGTTCTAGTGTCTTCTACCAATAGCCG  150

seq1  AGGCCCCACCTAGGTGGCTTGCAACTTCTCACCCCAACAACCTGCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCACCTAGGTGGCTTGCAACTTCTCACCCCAACAACCTGCTCCTG  200

seq1  AATGCTCTCATTATTCCTTTCCTCTCTGTGTAGCATTCCAGCCTGCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTCATTATTCCTTTCCTCTCTGTGTAGCATTCCAGCCTGCGAAG  250

seq1  TTTGCCTCAACTTCCCAGAATCCATTAGAGACACCCTGACTCGAGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCAACTTCCCAGAATCCATTAGAGACACCCTGACTCGAGCTCCT  300

seq1  GCAGGGCCCTGTGGTTTATCCCCCCTCCGAACAGATCTGACTGGATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCCTGTGGTTTATCCCCCCTCCGAACAGATCTGACTGGATTCAG  350

seq1  ATTCCTTAGTGCATCCAGATACCTCCCTAGAACATCAACTCCAGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAGTGCATCCAGATACCTCCCTAGAACATCAACTCCAGGAAATG  400

seq1  GCCAAGTCTCCTCTGCCTCTATTCCCTGGGTACTCAAAACAAATACATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTCCTCTGCCTCTATTCCCTGGGTACTCAAAACAAATACATGG  450

seq1  TGAATAGCTGAGTGTGTGTATCAGCGATTTGACGCTGTAAAGACATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCTGAGTGTGTGTATCAGCGATTTGACGCTGTAAAGACATCCAG  500

seq1  GGCGAAAAGGACTGATAGCTAATAAAACAATGAGCGATGCTGAAAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAAAGGACTGATAGCTAATAAAACAATGAGCGATGCTGAAAGGGCT  550

seq1  TCAACGCCGATCAGATGTGCTCTCCCGAGGAATCTCTCCACGCACGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGCCGATCAGATGTGCTCTCCCGAGGAATCTCTCCACGCACGTGTG  600

seq1  GAGGGAAAAGCCTTGAGAGCGTCACCAAACATTTGGCAGCAAGCTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAGCCTTGAGAGCGTCACCAAACATTTGGCAGCAAGCTCAGTG  650

seq1  GCCA-TTCCTCCCTCTGCTGAGAACTGGCTGGCTCTGCTGTAACTAAGGC  699
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCCTCCCTCTGCTGAGAACTGGCTGGCTCTGCTGTAACTAAGGC  700

seq1  GGAGTGACAGGCAGCTCCATCTGTCTGCACTCCAAATCCT-GGTTGGCTG  748
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGTGACAGGCAGCTCCATCTGTCTGCACTCCAAATCCTGGGTTGGCTG  750

seq1  CGGACCCTCCAAGAGTTGACTTTAGTTTTCTTGACAGTACAAATGTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGGACCCTCCAAGAGTTGACTTTAGTTTTCTTGACAGTACAAATGTA-TT  799

seq1  CTTCTACTTATTGGCAAGACCCAT-GATTTCTTTGCCATATTCTTCCTCA  847
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTTCTACTTA-TGGCAAGACCCATGGATTTCTTTGCCATATTCTTCCTCA  848

seq1  ATAGTGCCTAGAAAAATAGGATAAG-CTTGATCAGTG-TTTGAATTTACA  895
      |||||  |||||||||||||| ||| ||||||||||| ||||||||||||
seq2  ATAGTTGCTAGAAAAATAGGAAAAGCCTTGATCAGTGTTTTGAATTTACA  898

seq1  GTGATGTCACC-GGAAAAATAAGGGTTTTAAAACACAAGCACCTACTTTA  944
      ||||||||||| ||||||||||||||||  |||||| |||||||||||  
seq2  GTGATGTCACCGGGAAAAATAAGGGTTT--AAACACTAGCACCTACTT--  944

seq1  AAAAGCATCTTTCTCCAAGATCTGCAATTGTAGATAGATT-CTCCCACAG  993
      ||||||||||||   ||||||||||||||||||||||||| |||||||||
seq2  AAAAGCATCTTTTCTCAAGATCTGCAATTGTAGATAGATTCCTCCCACAG  994

seq1  CTTGCTTCCAGGTTTTGATTGCCCCCAAGGCCT-GGAAATAAT-ACATGT  1041
      |||||||||||| |||||||| ||||||||||| ||||||||| ||||||
seq2  CTTGCTTCCAGG-TTTGATTG-CCCCAAGGCCTGGGAAATAATAACATGT  1042

seq1  ATTTATCTCTGTGCTTTGTGGAATAGTACCTCCCCAATTGCCAAAATCCA  1091
      |||  ||||||||| || ||| || |||||  ||| ||||||||||||| 
seq2  ATTATTCTCTGTGCCTT-TGGGAT-GTACCCTCCCCATTGCCAAAATCCC  1090

seq1  CATCTAAC  1099
        ||||||
seq2  ACTCTAAC  1098