BAC Information

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BAC

Clone NameB6Ng01-124K09
Chromosome6 (Build37)
Map Location 30,312,273 - 30,461,657
singlet/doubletdoublet
Overlap geneZc3hc1, 2410127E18Rik, 2700094F01Rik
Upstream geneCalu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
Downstream gene1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124K09.bB6Ng01-124K09.g
ACCDH927500DH927501
length538944
definitionDH927500|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K09, 5' end.DH927501|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,461,114 - 30,461,657)(30,312,273 - 30,313,219)
sequence
accaacccaggggaaaggccaccagagagaataagatgaagccacataga
caagccaacaccacctgtctcagaagaaaccagccctcctcacattctgg
tcttagattccatcttcccaaaccctgtgtgggaacaaagtctggtgttt
tggggttttttttaaagtactgcctaactttttcttttgaaggaggcact
ggtgttctgggatatttggttatgataactctaataatacataatggtaa
ctatcaacttcagtgtggcaagtgttttttaagccccggaagaaatacac
attagtttatgggttacattaagagaaagagatagagccgggcgtggtag
cgcacgcctttgatcccagcactcgggaggcagaggcaggaggatttctg
tgttcgaggccaacctggtctaaaagtgagttccaggacagcctgggcta
tacagagaaactctgcctcgaaaaaaaacaaaaaaagagcaagagataga
gagggagggagcgggagagagagggagagggagaggga
gaattcaccctatgaggaaagcgtcagtctctgctataggcccaacttcc
atcaatggaacctctcctagtctcagaatgtttgggtgagagaaaaaaaa
aaaaccattcaaaccacagcactaaattaataaaaagaaataattatctt
ttaatgggacattaaaaacaaaattcaagccagatatggtggctatgcct
gtaaccccagcactccaagtcaggatcttgaatttaaggtcagtctaggt
tattagagagagccagagcctgctctcaaaaactcggaagtatctgggca
aacagatcagataaaaaagtgtgttcgtgataaggtgataagtaaaagga
cagggatttaatcctctaaaatccacggctgggtgcagatgtgtgcctgt
gatcccagctctggggagatggaacagaggatccttggagctggctggca
gctaatctagccttattgataagactcaggctcaaacaaagtagactgag
ttcctcaaggtgacatccagggttgtcctatgccttctacacatacaaac
acacgaatgtacagccacacacatgaacatgcacacacacacacacaact
ataaagaatcaaatcagccaggtgtggtggtgcactcctgggatccaaac
tcttgggaagctgaaggagaaggctcaggaggacaaggtcatgcccactc
acacagggaaaacagcccaaggctgggttacaatgtcaaacagaggaacc
aaaaccagaggggcgagaaggtgaagtgatggctcagtggttcctagtgc
tcacatggcagcacacaattcagggaatcagacaccttcatctggcctcc
acaggcaccaggtggtgcctgtgtgcctagatatacatgcagaacaaaaa
cccattacacactcagtggtagaaaaaccataaaagcaagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30461114_30461657
seq2: B6Ng01-124K09.b_45_588 (reverse)

seq1  TCCCTCTCCCTCTCCCTCTCTCTCCCGCTCCCTCCCTCTCTATCTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCCTCTCCCTCTCTCTCCCGCTCCCTCCCTCTCTATCTCTTGC  50

seq1  TCTTTTTTTGTTTTTTTTCGAGGCAGAGTTTCTCTGTATAGCCCAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGTTTTTTTTCGAGGCAGAGTTTCTCTGTATAGCCCAGGCTG  100

seq1  TCCTGGAACTCACTTTTAGACCAGGTTGGCCTCGAACACAGAAATCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTTAGACCAGGTTGGCCTCGAACACAGAAATCCTCC  150

seq1  TGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCGTGCGCTACCACGCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCGTGCGCTACCACGCCCG  200

seq1  GCTCTATCTCTTTCTCTTAATGTAACCCATAAACTAATGTGTATTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCTCTTTCTCTTAATGTAACCCATAAACTAATGTGTATTTCTTC  250

seq1  CGGGGCTTAAAAAACACTTGCCACACTGAAGTTGATAGTTACCATTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTTAAAAAACACTTGCCACACTGAAGTTGATAGTTACCATTATGT  300

seq1  ATTATTAGAGTTATCATAACCAAATATCCCAGAACACCAGTGCCTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGAGTTATCATAACCAAATATCCCAGAACACCAGTGCCTCCTTC  350

seq1  AAAAGAAAAAGTTAGGCAGTACTTTAAAAAAAACCCCAAAACACCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGTTAGGCAGTACTTTAAAAAAAACCCCAAAACACCAGACT  400

seq1  TTGTTCCCACACAGGGTTTGGGAAGATGGAATCTAAGACCAGAATGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCACACAGGGTTTGGGAAGATGGAATCTAAGACCAGAATGTGAG  450

seq1  GAGGGCTGGTTTCTTCTGAGACAGGTGGTGTTGGCTTGTCTATGTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGGTTTCTTCTGAGACAGGTGGTGTTGGCTTGTCTATGTGGCTT  500

seq1  CATCTTATTCTCTCTGGTGGCCTTTCCCCTGGGTTGGTGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTCTCTCTGGTGGCCTTTCCCCTGGGTTGGTGAATTC  544

seq1: chr6_30312273_30313219
seq2: B6Ng01-124K09.g_67_1010

seq1  GAATTCACCCTATGAGGAAAGCGTCAGTCTCTGCTATAGGCCCAACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTATGAGGAAAGCGTCAGTCTCTGCTATAGGCCCAACTTCC  50

seq1  ATCAATGGAACCTCTCCTAGTCTCAGAATGTTTGGGTGAGAGAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGAACCTCTCCTAGTCTCAGAATGTTTGGGTGAGAGAAAAAAAA  100

seq1  AAAACCATTCAAACCACAGCACTAAATTAATAAAAAGAAATAATTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTCAAACCACAGCACTAAATTAATAAAAAGAAATAATTATCTT  150

seq1  TTAATGGGACATTAAAAACAAAATTCAAGCCAGATATGGTGGCTATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGACATTAAAAACAAAATTCAAGCCAGATATGGTGGCTATGCCT  200

seq1  GTAACCCCAGCACTCCAAGTCAGGATCTTGAATTTAAGGTCAGTCTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCAGCACTCCAAGTCAGGATCTTGAATTTAAGGTCAGTCTAGGT  250

seq1  TATTAGAGAGAGCCAGAGCCTGCTCTCAAAAACTCGGAAGTATCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGAGAGCCAGAGCCTGCTCTCAAAAACTCGGAAGTATCTGGGCA  300

seq1  AACAGATCAGATAAAAAAGTGTGTTCGTGATAAGGTGATAAGTAAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAGATAAAAAAGTGTGTTCGTGATAAGGTGATAAGTAAAAGGA  350

seq1  CAGGGATTTAATCCTCTAAAATCCACGGCTGGGTGCAGATGTGTGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTTAATCCTCTAAAATCCACGGCTGGGTGCAGATGTGTGCCTGT  400

seq1  GATCCCAGCTCTGGGGAGATGGAACAGAGGATCCTTGGAGCTGGCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCTCTGGGGAGATGGAACAGAGGATCCTTGGAGCTGGCTGGCA  450

seq1  GCTAATCTAGCCTTATTGATAAGACTCAGGCTCAAACAAAGTAGACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTAGCCTTATTGATAAGACTCAGGCTCAAACAAAGTAGACTGAG  500

seq1  TTCCTCAAGGTGACATCCAGGGTTGTCCTATGCCTTCTACACATACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGGTGACATCCAGGGTTGTCCTATGCCTTCTACACATACAAAC  550

seq1  ACACGAATGTACAGCCACACACATGAACATGCACACACACACACACAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAATGTACAGCCACACACATGAACATGCACACACACACACACAACT  600

seq1  ATAAAGAATCAAATCAGCCAGGTGTGGTGGTGCACTCCTGGGATCCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATCAAATCAGCCAGGTGTGGTGGTGCACTCCTGGGATCCAAAC  650

seq1  TCTTGGGAAGCTGAAGGAGAAGGCTCAGGAGGACAAGGTCATGCCCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAAGCTGAAGGAGAAGGCTCAGGAGGACAAGGTCATGCCCACTC  700

seq1  ACACAGGGAAAACAGCCC-AGGCTGGGTTACAATGTCAAACAGAGGAACC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACAGGGAAAACAGCCCAAGGCTGGGTTACAATGTCAAACAGAGGAACC  750

seq1  AAAACCAGAGGGGCCGAGAAGGTGAAGGGATGGCTCAGTGGTTCCTAGTG  799
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AAAACCAGAGGGG-CGAGAAGGTGAAGTGATGGCTCAGTGGTTCCTAGTG  799

seq1  CTCACATGGCAGCACACAATTCCAGGGAATCAGACACCCTCATCTGGCCT  849
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  CTCACATGGCAGCACACAATT-CAGGGAATCAGACACCTTCATCTGGCCT  848

seq1  CCACAGGCACCAGGT-GTGCCTGTGGTGCCTAGATATACATGCAGACAAA  898
      ||||||||||||||| |||||||| |||||||||||||||||||||  ||
seq2  CCACAGGCACCAGGTGGTGCCTGT-GTGCCTAGATATACATGCAGAACAA  897

seq1  ACACCCATTACACACTACAGTTGGTAG-AAAACCATAAAAAGCAAGCAAG  947
      | |||||||||||||| ||| |||||| |||||||| |||||||||||||
seq2  AAACCCATTACACACT-CAG-TGGTAGAAAAACCAT-AAAAGCAAGCAAG  944