BAC Information

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BAC

Clone NameB6Ng01-126G18
Chromosome6 (Build37)
Map Location 98,371,497 - 98,480,884
singlet/doubletdoublet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G18.bB6Ng01-126G18.g
ACCDH928796DH928797
length1,1541,075
definitionDH928796|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G18, 5' end.DH928797|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,479,708 - 98,480,884)(98,371,497 - 98,372,597)
sequence
gaattcttgtcaatcatgtgtgatggctgagtgattggcaggctctgaat
gaaactcattcactctcaagtgttaccctgagctctcatttgcatataaa
cctttctttctttcttgatatggaattgcctgctttttatttttccttaa
aaagatcttttttttttttaaagcaaaaacaggagagatgctctcttgtg
tttttaatgggaaaagctctgcgtgtcttctaggtttcacttgtggaaag
caagccaaagggcaagggggaaagatggagaatgaagggatgggagcaaa
acaggagggacagctagagaaaggagaaaggaagctcatattgtgttttg
gcctagagttgaagtttccctgttggaactcctttaagagatatatactg
ggtgtgctcaaggctgaaaaatgtgcccttctggccacgatttcttctgg
cacctaaaacataactctgccttctcctctcaataccagtgacggggaac
ctggcagctctcctgccaaaattttaactcaaccgattccattccacgaa
tgcatgctgttttgttctgacatttatggtgtggattttgcctatgctta
cagattcgaatggcttacagtaatctcctgtatagcatttcatcgtccca
gcctctgtctctcacaaaataagcaatttgaatctccccatagcagcata
gattgtcacagaacatgtgaccattgtccctcaaggagcagcaaactgtg
attgctttactgtacctccctcagatttgtgccagccaggaacctgaatc
caggcagccctgccttgaaattgcatgtgggaaggtgtgtactcacagac
atttctcaaggtggattactggtggacaactccccttgcatatttagcag
acaagatggattcacaatgtctcctatgggctctggggaccagaggacag
ttagcaccacctttgtctagtgtctcatagtcatggctgtgtgcagtaac
agtcacagccaccatggttccattcatgcagctccctcctctcataacat
aactgctccttatagagttgtttgtcatagtaaggtgcctgagtaatagc
atgagcacaaacgctccagacgggcgtccgacatctccttcccggacagc
ccat
gaattcttccaaaggttagtgtgtggctctccgtcaaatcatttaatgcg
agttttggttgctatttattctactgcaacgtaactgtatttaaggaata
aggcatatttcttaactaaaacaccatttgaaattttgtacttgctttca
taacttgattggctcagttagtatttccccagtgcttgatatatgcgagc
cagtggtttaatattttaatgcatgcaacatcacagttttaggtcttttt
aattagaacctcacagaaacccaatgtggatgttacaatgttttatgaag
attgacagacatattgctggtttttctgaaagcttttttaaaaaatgttt
catttctttaaaaaatatatattgctggggcttagggagaaagctcagtt
tttacatgatcatgaattcccaagctcagtccctaccatccatgttattt
ataagcaggacatggtgatatgaggagacaaagacgagaagacccttggt
tctcaccagctaagatatgtggcacctaaggaaaactctggcttccaaac
atgtgtgcagtcacacacaagtaaaataatgtatttctacatagtttttg
gtggacatgttctctaattagtcaggaggttcccagtttatagttgttta
tagttattaatcatcacttcagatttgctacttttttgattgtttaagga
actataagcaaattaaaatagcacagataacattattcttcattctgatc
tataaattgcaaatcaagccttaagagttcatattgttcccattctacta
taacctgtgttgaccaactcagtatttaggacatagaaacaaaacatttt
tgagtatgcagcctcaagcagtctaaggcaggaaaaatagtaatgagatg
tagaatggctggaaattcaacaaattcccaaatccagatgaaagccaaag
caaaatgaattaacccaaaatagattagcattgactagcaaggaaagatg
agatctactttcagaccattgccttgcattggcaatgaaccacaaagggt
ctcagttggtacgttgttgatcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98479708_98480884
seq2: B6Ng01-126G18.b_47_1200 (reverse)

seq1  ATGGGCTGTCTCTGGGAAGGAGAATGTCTGGGGACGCCCGTCTTGGAGCG  50
      ||||||||  || ||||||||| |||||   ||||||||||| |||||||
seq2  ATGGGCTG--TCCGGGAAGGAG-ATGTC---GGACGCCCGTC-TGGAGCG  43

seq1  TTTGTGCTTCATGCCTATAACTCAGGCCACCTTACTAATGACAGACAAAC  100
      ||||||| ||||| |||| ||||||| ||||||||| |||||| || |||
seq2  TTTGTGC-TCATG-CTATTACTCAGG-CACCTTACT-ATGACAAAC-AAC  88

seq1  TCTAATTAAGGAGCAGTTAATGTTATGAGAGGGAGGGAGCCTGCATGAAT  150
      ||||  |||||||||||| ||||||||||| |||||||| ||||||||||
seq2  TCTA--TAAGGAGCAGTT-ATGTTATGAGA-GGAGGGAG-CTGCATGAAT  133

seq1  GGGACCATGGTGGCTGTGAACTGTTACTGCACACAGCCATGACTATTGAA  200
      || ||||||||||||||| |||||||||||||||||||||||||||   |
seq2  GGAACCATGGTGGCTGTG-ACTGTTACTGCACACAGCCATGACTAT--GA  180

seq1  GACAATTAAGACAAAGGTGGTTGCTAACTGTCCTCTGGTCCCCAGAGCCC  250
      |||| |  |||||||||||| |||||||||||||||||||||||||||||
seq2  GACACT--AGACAAAGGTGG-TGCTAACTGTCCTCTGGTCCCCAGAGCCC  227

seq1  ATAGGAGACATTGTGAATCCATCTTGTCTGCTAAATATGCAAGGGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGACATTGTGAATCCATCTTGTCTGCTAAATATGCAAGGGGAGTT  277

seq1  GTCCACCAGTAATCCACCTTGAGAAATGTCTGTGAGTACACACCTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCAGTAATCCACCTTGAGAAATGTCTGTGAGTACACACCTTCCCA  327

seq1  CATGCAATTTCAAGGCAGGGCTGCCTGGATTCAGGTTCCTGGCTGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTTCAAGGCAGGGCTGCCTGGATTCAGGTTCCTGGCTGGCACA  377

seq1  AATCTGAGGGAGGTACAGTAAAGCAATCACAGTTTGCTGCTCCTTGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGGGAGGTACAGTAAAGCAATCACAGTTTGCTGCTCCTTGAGGG  427

seq1  ACAATGGTCACATGTTCTGTGACAATCTATGCTGCTATGGGGAGATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTCACATGTTCTGTGACAATCTATGCTGCTATGGGGAGATTCAA  477

seq1  ATTGCTTATTTTGTGAGAGACAGAGGCTGGGACGATGAAATGCTATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATTTTGTGAGAGACAGAGGCTGGGACGATGAAATGCTATACAG  527

seq1  GAGATTACTGTAAGCCATTCGAATCTGTAAGCATAGGCAAAATCCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACTGTAAGCCATTCGAATCTGTAAGCATAGGCAAAATCCACACC  577

seq1  ATAAATGTCAGAACAAAACAGCATGCATTCGTGGAATGGAATCGGTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCAGAACAAAACAGCATGCATTCGTGGAATGGAATCGGTTGAG  627

seq1  TTAAAATTTTGGCAGGAGAGCTGCCAGGTTCCCCGTCACTGGTATTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTGGCAGGAGAGCTGCCAGGTTCCCCGTCACTGGTATTGAGA  677

seq1  GGAGAAGGCAGAGTTATGTTTTAGGTGCCAGAAGAAATCGTGGCCAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGCAGAGTTATGTTTTAGGTGCCAGAAGAAATCGTGGCCAGAAG  727

seq1  GGCACATTTTTCAGCCTTGAGCACACCCAGTATATATCTCTTAAAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTTTCAGCCTTGAGCACACCCAGTATATATCTCTTAAAGGAGT  777

seq1  TCCAACAGGGAAACTTCAACTCTAGGCCAAAACACAATATGAGCTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGGGAAACTTCAACTCTAGGCCAAAACACAATATGAGCTTCCTT  827

seq1  TCTCCTTTCTCTAGCTGTCCCTCCTGTTTTGCTCCCATCCCTTCATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCTCTAGCTGTCCCTCCTGTTTTGCTCCCATCCCTTCATTCTC  877

seq1  CATCTTTCCCCCTTGCCCTTTGGCTTGCTTTCCACAAGTGAAACCTAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCCCCCTTGCCCTTTGGCTTGCTTTCCACAAGTGAAACCTAGAA  927

seq1  GACACGCAGAGCTTTTCCCATTAAAAACACAAGAGAGCATCTCTCCTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCAGAGCTTTTCCCATTAAAAACACAAGAGAGCATCTCTCCTGTT  977

seq1  TTTGCTTTAAAAAAAAAAAAGATCTTTTTAAGGAAAAATAAAAAGCAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAAAAAAAAAAAAGATCTTTTTAAGGAAAAATAAAAAGCAGGC  1027

seq1  AATTCCATATCAAGAAAGAAAGAAAGGTTTATATGCAAATGAGAGCTCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATATCAAGAAAGAAAGAAAGGTTTATATGCAAATGAGAGCTCAG  1077

seq1  GGTAACACTTGAGAGTGAATGAGTTTCATTCAGAGCCTGCCAATCACTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACTTGAGAGTGAATGAGTTTCATTCAGAGCCTGCCAATCACTCA  1127

seq1  GCCATCACACATGATTGACAAGAATTC  1177
      |||||||||||||||||||||||||||
seq2  GCCATCACACATGATTGACAAGAATTC  1154

seq1: chr6_98371497_98372597
seq2: B6Ng01-126G18.g_68_1142

seq1  GAATTCTTCCAAAGGTTAGTGTGTGGCTCTCCGTCAAATCATTTAATGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAAGGTTAGTGTGTGGCTCTCCGTCAAATCATTTAATGCG  50

seq1  AGTTTTGGTTGCTATTTATTCTACTGCAACGTAACTGTATTTAAGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGTTGCTATTTATTCTACTGCAACGTAACTGTATTTAAGGAATA  100

seq1  AGGCATATTTCTTAACTAAAACACCATTTGAAATTTTGTACTTGCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATTTCTTAACTAAAACACCATTTGAAATTTTGTACTTGCTTTCA  150

seq1  TAACTTGATTGGCTCAGTTAGTATTTCCCCAGTGCTTGATATATGCGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGATTGGCTCAGTTAGTATTTCCCCAGTGCTTGATATATGCGAGC  200

seq1  CAGTGGTTTAATATTTTAATGCATGCAACATCACAGTTTTAGGTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTTAATATTTTAATGCATGCAACATCACAGTTTTAGGTCTTTTT  250

seq1  AATTAGAACCTCACAGAAACCCAATGTGGATGTTACAATGTTTTATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAACCTCACAGAAACCCAATGTGGATGTTACAATGTTTTATGAAG  300

seq1  ATTGACAGACATATTGCTGGTTTTTCTGAAAGCTTTTTTAAAAAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGACATATTGCTGGTTTTTCTGAAAGCTTTTTTAAAAAATGTTT  350

seq1  CATTTCTTTAAAAAATATATATTGCTGGGGCTTAGGGAGAAAGCTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTAAAAAATATATATTGCTGGGGCTTAGGGAGAAAGCTCAGTT  400

seq1  TTTACATGATCATGAATTCCCAAGCTCAGTCCCTACCATCCATGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGATCATGAATTCCCAAGCTCAGTCCCTACCATCCATGTTATTT  450

seq1  ATAAGCAGGACATGGTGATATGAGGAGACAAAGACGAGAAGACCCTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGGACATGGTGATATGAGGAGACAAAGACGAGAAGACCCTTGGT  500

seq1  TCTCACCAGCTAAGATATGTGGCACCTAAGGAAAACTCTGGCTTCCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCAGCTAAGATATGTGGCACCTAAGGAAAACTCTGGCTTCCAAAC  550

seq1  ATGTGTGCAGTCACACACAAGTAAAATAATGTATTTCTACATAGTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCAGTCACACACAAGTAAAATAATGTATTTCTACATAGTTTTTG  600

seq1  GTGGACATGTTCTCTAATTAGTCAGGAGGTTCCCAGTTTATAGTTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATGTTCTCTAATTAGTCAGGAGGTTCCCAGTTTATAGTTGTTTA  650

seq1  TAGTTATTAATCATCACTTCAGATTTGCTACTTTTTTGATTGTTTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTAATCATCACTTCAGATTTGCTACTTTTTTGATTGTTTAAGGA  700

seq1  ACTATAAGCAAATTAAAATAGCACAGATAACATTATTCTTCATTCTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAGCAAATTAAAATAGCACAGATAACATTATTCTTCATTCTGATC  750

seq1  TATAAATTGCAAATCAAGCCTTAAGAGTTCATATTGTTCCCATTCTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGCAAATCAAGCCTTAAGAGTTCATATTGTTCCCATTCTACTA  800

seq1  TAACCTGTGTTGACCAACTCAGTATTTAGGACATAGAAACAAAACATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGTTGACCAACTCAGTATTTAGGACATAGAAACAAAACATTTT  850

seq1  TGAGTTATGCAGCCTCAAGCAGTCTAAGGCAGGAAAAAATAGTAATGAGA  900
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAG-TATGCAGCCTCAAGCAGTCTAAGGCAGG-AAAAATAGTAATGAGA  898

seq1  TGTAGAATGGCTGGAAAATTCAAACAAATTCCCAAATCCAAGAATGAAAG  950
      |||||||||||||| |||||| ||||||||||||||||||   |||||||
seq2  TGTAGAATGGCTGG-AAATTC-AACAAATTCCCAAATCCA--GATGAAAG  944

seq1  CCAAAGCAAAAAATGGAAATAAACACAAAAATAGATTAGCATTGGAACTA  1000
      |||||||  ||||||  ||| ||| | |||||||||||||||||  ||||
seq2  CCAAAGC--AAAATG--AATTAAC-CCAAAATAGATTAGCATTG--ACTA  987

seq1  GCAAAGGAGAGATGAGATCTAACTTTCAAGACACCAGTGCCCTGCCATTG  1050
      || ||||| ||||||||||| ||||||   | |||| |||| || |||||
seq2  GC-AAGGAAAGATGAGATCT-ACTTTC---AGACCATTGCCTTG-CATTG  1031

seq1  GCAGATGAGCAGCAGAGGGGTGCTCAGGTTTGGGTACGTTGTTGATTCAG  1100
      ||| |||| |  || ||||   |||||   | ||||||||||||| ||||
seq2  GCA-ATGAACCACAAAGGG--TCTCAG---TTGGTACGTTGTTGA-TCAG  1074

seq1  A  1101
      |
seq2  A  1075