BAC Information

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BAC

Clone NameB6Ng01-126G24
Chromosome6 (Build37)
Map Location 146,190,160 - 146,338,943
singlet/doubletdoublet
Overlap geneItpr2
Upstream geneKras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G24.bB6Ng01-126G24.g
ACCDH928808DH928809
length579913
definitionDH928808|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G24, 5' end.DH928809|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,190,160 - 146,190,744)(146,338,013 - 146,338,943)
sequence
cacatgtgtgctgtgacatgcacatgtgacatgcacatgcaatgtgaata
tcgtaaactagttaaatatttttacatatatttagaggccattgagctgt
gtcaggagtaaaagcacttgaagccaggcttgaccactgaattccatctg
tgggacgtacatggtagaagtgaaccagctcttagtcacacgctatgcca
tgtgagacacacacagagagagacacacagacagagacactaaaccaatg
tgataaatgtaagtttgctcaatgggaaaagctgtcgtcctagtattgag
cagaatatcagtagtgcctagagaagataacagacaccctaggagttgaa
tgcagccttagagagactaaccacaaagaagtgagatctgggcacacagg
tgcgacccaaacaattaaaccaggtaaaatatagtgaattacattcagac
tctgagactctggacttaattgagaagagaaggaataaagaacagcatat
ttctttagaaatagatattttaaagatcttgccttccacactttactact
aggaggaggaagagatggggggtggggat
gaattcttgccagcagagacacctgatggctcacaacaacctgtaattct
aggtctgtgggacctggcgccctcctctggccgtcacatgcacatacata
cacatatacagaaacacacacataaataaaaattaaaaacaaaacaaaac
aaaaactggaacctaaaactgtctgatggtatacttactttttccatttt
atcttggcttgaaaataaacggtttaaatttctctctgttcttattttga
aagcttttagggatcacatgacatacttgaatatgtttggattttgagtt
ttgtgttgtcatttttacatattacatattttcatatgctctctgcctga
gccactcacccagagaaactgggttcttgattcctaacttacttattttt
aaaggtgtgagaaaaagaataatggctgctagaaatctgaaaaccaaacc
caagccttcatgtagtgaagcttcaatagcgattcccattttggccaaat
gaaatggagattaaactctatctgggtaaaatcacataaatagtgagtgg
ggggtccagtcacatgattgacagttggagtttcccatggcctcacggta
tagactcctccctcttcttctctttgtgatatgctgcagactttgaatct
gaacagttaaggaggtatttgctgagtctctgggcatgcacaccagagct
cccacctacagccactgagatgattggctccttgctaacagcccagccag
ggatgttaaagtcagagaaacagttgcttggctccactgatcacccctca
gttggaaattcttgacctttgtccaaattagcccgacccaaggccaaatt
tccagcttgtctaacacccaactgaagctatccatgttatctagtgagaa
taaacagtcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146190160_146190744
seq2: B6Ng01-126G24.b_49_633

seq1  GAATTCCACATGTGTGCTGTGACATGCACATGTGACATGCACATGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGTGTGCTGTGACATGCACATGTGACATGCACATGCAATG  50

seq1  TGAATATCGTAAACTAGTTAAATATTTTTACATATATTTAGAGGCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCGTAAACTAGTTAAATATTTTTACATATATTTAGAGGCCATTG  100

seq1  AGCTGTGTCAGGAGTAAAAGCACTTGAAGCCAGGCTTGACCACTGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCAGGAGTAAAAGCACTTGAAGCCAGGCTTGACCACTGAATTC  150

seq1  CATCTGTGGGACGTACATGGTAGAAGTGAACCAGCTCTTAGTCACACGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGGGACGTACATGGTAGAAGTGAACCAGCTCTTAGTCACACGCT  200

seq1  ATGCCATGTGAGACACACACAGAGAGAGACACACAGACAGAGACACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTGAGACACACACAGAGAGAGACACACAGACAGAGACACTAAA  250

seq1  CCAATGTGATAAATGTAAGTTTGCTCAATGGGAAAAGCTGTCGTCCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGATAAATGTAAGTTTGCTCAATGGGAAAAGCTGTCGTCCTAGT  300

seq1  ATTGAGCAGAATATCAGTAGTGCCTAGAGAAGATAACAGACACCCTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCAGAATATCAGTAGTGCCTAGAGAAGATAACAGACACCCTAGGA  350

seq1  GTTGAATGCAGCCTTAGAGAGACTAACCACAAAGAAGTGAGATCTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGCAGCCTTAGAGAGACTAACCACAAAGAAGTGAGATCTGGGCA  400

seq1  CACAGGTGCGACCCAAACAATTAAACCAGGTAAAATATAGTGAATTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGCGACCCAAACAATTAAACCAGGTAAAATATAGTGAATTACAT  450

seq1  TCAGACTCTGAGACTCTGGACTTAATTGAGAAGAGAAGGAATAAAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCTGAGACTCTGGACTTAATTGAGAAGAGAAGGAATAAAGAACA  500

seq1  GCATATTTCTTTAGAAATAGATATTTTAAAGATCTTGCCTTCCACACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTCTTTAGAAATAGATATTTTAAAGATCTTGCCTTCCACACTTT  550

seq1  ACTACTAGGAGGAGGAAGAGATGGGGGGTGGGGAT  585
      |||||||||||||||||||||||||||||||||||
seq2  ACTACTAGGAGGAGGAAGAGATGGGGGGTGGGGAT  585

seq1: chr6_146338013_146338943
seq2: B6Ng01-126G24.g_67_979 (reverse)

seq1  ATAGTACTGTTTTATTCTTCAACTATGATAAACATGGATAGCCTTCAGTT  50
      |||| |||| ||||||||   |||| ||| ||||||||||| |||||| |
seq2  ATAGGACTG-TTTATTCT--CACTA-GAT-AACATGGATAG-CTTCAG-T  43

seq1  TGGGTTTGTTTAGAACAAGGCTGGACATTTTTGCCCTTGTGTTCTGGGCT  100
      |||||    |||| |||| |||||| |  |||| ||||| ||   |||| 
seq2  TGGGT---GTTAG-ACAA-GCTGGAAA--TTTGGCCTTGGGT--CGGGC-  83

seq1  TATTTTGGACAAATGTTCAAGAATGTCCAACTGAGGGGTGAACCAGT-GA  149
      || |||||||||| | |||||||| ||||||||||||||| | |||| ||
seq2  TAATTTGGACAAA-GGTCAAGAATTTCCAACTGAGGGGTG-ATCAGTGGA  131

seq1  GCCAAGCATCTGTTTCTCTGACTTTACCATCCCTGGCTGGGCTGTTTAGC  199
      |||||||| ||||||||||||||||| ||||||||||||||||| |||||
seq2  GCCAAGCAACTGTTTCTCTGACTTTAACATCCCTGGCTGGGCTG-TTAGC  180

seq1  AAGGAGCCAATCATCTCAGTGGCTGTAGGTGGGAGCTCTGGTGTGCATG-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGGAGCCAATCATCTCAGTGGCTGTAGGTGGGAGCTCTGGTGTGCATGC  230

seq1  CCAGAGACTCAGCAAATACCTCCTTAACTGTTCAGATTCAAAGTCTGCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTCAGCAAATACCTCCTTAACTGTTCAGATTCAAAGTCTGCAG  280

seq1  CATATCACAAAGAGAAGAAGAGGGAGGAGTCTATACCGTGAGGCCATGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACAAAGAGAAGAAGAGGGAGGAGTCTATACCGTGAGGCCATGGG  330

seq1  AAACTCCAACTGTCAATCATGTGACTGGACCCCCCACTCACTATTTATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAACTGTCAATCATGTGACTGGACCCCCCACTCACTATTTATGT  380

seq1  GATTTTACCCAGATAGAGTTTAATCTCCATTTCATTTGGCCAAAATGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTACCCAGATAGAGTTTAATCTCCATTTCATTTGGCCAAAATGGGA  430

seq1  ATCGCTATTGAAGCTTCACTACATGAAGGCTTGGGTTTGGTTTTCAGATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTATTGAAGCTTCACTACATGAAGGCTTGGGTTTGGTTTTCAGATT  480

seq1  TCTAGCAGCCATTATTCTTTTTCTCACACCTTTAAAAATAAGTAAGTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGCCATTATTCTTTTTCTCACACCTTTAAAAATAAGTAAGTTAG  530

seq1  GAATCAAGAACCCAGTTTCTCTGGGTGAGTGGCTCAGGCAGAGAGCATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGAACCCAGTTTCTCTGGGTGAGTGGCTCAGGCAGAGAGCATAT  580

seq1  GAAAATATGTAATATGTAAAAATGACAACACAAAACTCAAAATCCAAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTAATATGTAAAAATGACAACACAAAACTCAAAATCCAAACA  630

seq1  TATTCAAGTATGTCATGTGATCCCTAAAAGCTTTCAAAATAAGAACAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGTATGTCATGTGATCCCTAAAAGCTTTCAAAATAAGAACAGAG  680

seq1  AGAAATTTAAACCGTTTATTTTCAAGCCAAGATAAAATGGAAAAAGTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAAACCGTTTATTTTCAAGCCAAGATAAAATGGAAAAAGTAAG  730

seq1  TATACCATCAGACAGTTTTAGGTTCCAGTTTTTGTTTTGTTTTGTTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATCAGACAGTTTTAGGTTCCAGTTTTTGTTTTGTTTTGTTTTTA  780

seq1  ATTTTTATTTATGTGTGTGTTTCTGTATATGTGTATGTATGTGCATGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTATGTGTGTGTTTCTGTATATGTGTATGTATGTGCATGTGA  830

seq1  CGGCCAGAGGAGGGCGCCAGGTCCCACAGACCTAGAATTACAGGTTGTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGAGGAGGGCGCCAGGTCCCACAGACCTAGAATTACAGGTTGTTG  880

seq1  TGAGCCATCAGGTGTCTCTGCTGGCAAGAATTC  931
      |||||||||||||||||||||||||||||||||
seq2  TGAGCCATCAGGTGTCTCTGCTGGCAAGAATTC  913