BAC Information

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BAC

Clone NameB6Ng01-126H15
Chromosome6 (Build37)
Map Location 83,963,301 - 84,077,159
singlet/doubletdoublet
Overlap geneDysf, LOC665114
Upstream geneD6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H15.bB6Ng01-126H15.g
ACCDH928838DH928839
length952230
definitionDH928838|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H15, 5' end.DH928839|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,963,301 - 83,964,256)(84,076,930 - 84,077,159)
sequence
gaattctgcaaactcccgcagagcagccctctgaagagtgagtggtgtca
ttgtgcagaagtcaacgtctttgcctcagagtgcttggtgtttaggtcct
ggggaacaaaactccagaccttaggagaatgtgttcaaagaaatcttcag
tcttcattcatggttaggtggtatggccaccaagagattatagagaacag
gactacaacattcctgagtcttgggagcctggccagtgatgacacccatg
tgctcactgggtaagtgggggtcagtgcacccccaacctatacacaggtg
ttagatttatgttaaatgggctccatgttaaaaagccaggtatggttaaa
aaaagagattctctgattttttccaaaggaagctataagaggagattgac
atgttccaatgcttaacttggacacaattttgctataaaacatcatattg
ctccaagacatgtctcttggggacactagtgtattgtcttatgcacagca
taaactctaggacagcatcctctcccttatccatcatcacccatgagggg
tgacatcattaaagccaatgacgacttttaatttcctttttctttttttt
tttttggtttttcgagacagggtttctctgtgtagccctggctgtcctgg
aactcactttgtagaccaggctggccttgaactcagaaatccgcctgcct
ctgcctccggggtgctgggattaaaggcatacgccaccacgcccggctaa
ttttcttttttcttacctctatcagtctggaaacatgatgtctaagcaca
acaacaaacagaaaccccatctggaattctacaaactacttcacaatgat
ctcattcccattgactccagtggaccttctaaccttcactggtgaatagt
ttgctctctctctctctgtagaatgcaatctaccaaatcccactaatcat
ga
atgaggcctaggtttcctgacctgacctgcctcccaaagaaggcccagcc
accctatatggtccacagagtcctctagccatccccatctgatctggggc
cagggattatttgggaaaggcactttgggaggcaggacagatatactcct
agagctaggcagagggacaacttggagcctagcctgtctctgacttacct
gttgggtatacagggggatgggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83963301_83964256
seq2: B6Ng01-126H15.b_49_1000

seq1  GAATTCTGCAAACTCCCGCAGAGCAGCCCTCTGAAGAGTGAGTGGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAACTCCCGCAGAGCAGCCCTCTGAAGAGTGAGTGGTGTCA  50

seq1  TTGTGCAGAAGTCAACGTCTTTGCCTCAGAGTGCTTGGTGTTTAGGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGAAGTCAACGTCTTTGCCTCAGAGTGCTTGGTGTTTAGGTCCT  100

seq1  GGGGAACAAAACTCCAGACCTTAGGAGAATGTGTTCAAAGAAATCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACAAAACTCCAGACCTTAGGAGAATGTGTTCAAAGAAATCTTCAG  150

seq1  TCTTCATTCATGGTTAGGTGGTATGGCCACCAAGAGATTATAGAGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCATGGTTAGGTGGTATGGCCACCAAGAGATTATAGAGAACAG  200

seq1  GACTACAACATTCCTGAGTCTTGGGAGCCTGGCCAGTGATGACACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAACATTCCTGAGTCTTGGGAGCCTGGCCAGTGATGACACCCATG  250

seq1  TGCTCACTGGGTAAGTGGGGGTCAGTGCACCCCCAACCTATACACAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGGGTAAGTGGGGGTCAGTGCACCCCCAACCTATACACAGGTG  300

seq1  TTAGATTTATGTTAAATGGGCTCCATGTTAAAAAGCCAGGTATGGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTATGTTAAATGGGCTCCATGTTAAAAAGCCAGGTATGGTTAAA  350

seq1  AAAAGAGATTCTCTGATTTTTTCCAAAGGAAGCTATAAGAGGAGATTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGATTCTCTGATTTTTTCCAAAGGAAGCTATAAGAGGAGATTGAC  400

seq1  ATGTTCCAATGCTTAACTTGGACACAATTTTGCTATAAAACATCATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAATGCTTAACTTGGACACAATTTTGCTATAAAACATCATATTG  450

seq1  CTCCAAGACATGTCTCTTGGGGACACTAGTGTATTGTCTTATGCACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGACATGTCTCTTGGGGACACTAGTGTATTGTCTTATGCACAGCA  500

seq1  TAAACTCTAGGACAGCATCCTCTCCCTTATCCATCATCACCCATGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTAGGACAGCATCCTCTCCCTTATCCATCATCACCCATGAGGGG  550

seq1  TGACATCATTAAAGCCAATGACGACTTTTAATTTCCTTTTTCTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATTAAAGCCAATGACGACTTTTAATTTCCTTTTTCTTTTTTTT  600

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  650

seq1  AACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCT  700

seq1  CTGCCTCCGGGGTGCTGGGATTAAAGGCATACGCCACCACGCCCGGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCGGGGTGCTGGGATTAAAGGCATACGCCACCACGCCCGGCTAA  750

seq1  -TTTCCTTTTTCTTACCTCTATCAGTCTGGAAACATGATGTCTAAGCACA  799
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTCTTACCTCTATCAGTCTGGAAACATGATGTCTAAGCACA  800

seq1  ACAAACAAACAGAAACCCCATCTGGAATTCTACAAACTACTTCACAATTG  849
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AC-AACAAACAGAAACCCCATCTGGAATTCTACAAACTACTTCACAA-TG  848

seq1  ATCTCATTCCCATTGAACTTCCAGTTGACCTTCTTACCTTTCAACTGGTG  899
      ||||||||||||||||   |||||| |||||||| |||||   |||||||
seq2  ATCTCATTCCCATTGA--CTCCAGTGGACCTTCTAACCTT--CACTGGTG  894

seq1  AATAGTTTGCTCTCTCTCTCTCTGTAG-ATGCAAATCTACAAATACCCAC  948
      ||||||||||||||||||||||||||| |||| ||||||| ||  |||||
seq2  AATAGTTTGCTCTCTCTCTCTCTGTAGAATGC-AATCTACCAAATCCCAC  943

seq1  T-ATCATGA  956
      | |||||||
seq2  TAATCATGA  952

seq1: chr6_84076930_84077159
seq2: B6Ng01-126H15.g_73_302 (reverse)

seq1  CCCCCACCCCCATCCCCCTGTATACCCAACAGGTAAGTCAGAGACAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCATCCCCCTGTATACCCAACAGGTAAGTCAGAGACAGGCT  50

seq1  AGGCTCCAAGTTGTCCCTCTGCCTAGCTCTAGGAGTATATCTGTCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAAGTTGTCCCTCTGCCTAGCTCTAGGAGTATATCTGTCCTGCC  100

seq1  TCCCAAAGTGCCTTTCCCAAATAATCCCTGGCCCCAGATCAGATGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGTGCCTTTCCCAAATAATCCCTGGCCCCAGATCAGATGGGGAT  150

seq1  GGCTAGAGGACTCTGTGGACCATATAGGGTGGCTGGGCCTTCTTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGGACTCTGTGGACCATATAGGGTGGCTGGGCCTTCTTTGGGAG  200

seq1  GCAGGTCAGGTCAGGAAACCTAGGCCTCAT  230
      ||||||||||||||||||||||||||||||
seq2  GCAGGTCAGGTCAGGAAACCTAGGCCTCAT  230