BAC Information

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BAC

Clone NameB6Ng01-126N24
Chromosome18 (Build37)6 (Build37)
Map Location 4,860,394 - 4,860,64854,713,195 - 54,714,048
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N24.bB6Ng01-126N24.g
ACCDH929134DH929135
length973844
definitionDH929134|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N24, 5' end.DH929135|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,860,394 - 4,860,648)(54,713,195 - 54,714,048)
sequence
gaattctaagtttgtcggcttcatggattttctgggacgttggaatactg
gcaaaggcttagctatgtcagaattcaatcttaaaaggcacttataataa
aataatactaaaagagagcacgtggatccacacaccagactaacacgggg
atagggtatgagtatacgggttatgagaatgccaaagttccaggaagtga
gtttccgtgaaactctttgcctcgtgagtgctcccaggcctctcggcctg
ccaagcaaacttcactggagtgtgcgtagcagcttggtgttttgattagt
tgtgattttctatagtggtctccatctgttgcaaagtttccctgatgaag
gtgaaaattactctgatctgtgggtataaggacaaatgtttataaattgt
tgcttgagattatactggtttaataaattagtagttgcagattcttgtct
aataaccatgatttcactagcactgagtaattatctaggtttcctgtacc
agacattgttcccaatcttgagcaggtcttaggtccaactagagagctgt
tggttaccaccaaggtgtgtgtgccatttttgcaccctcagggttattgt
gcaattctggtcattaatgtgggtcataggcaccatagctgagtaagatc
ctctttcgttccaggcacgtgcctccatcctctgcctctgtctctgggtg
ctgagagagtcctcgtgtttgcacagcaagcactttaccatctgagctat
ctttgtagcaccccaaataccatccaaaactccaaacaaggctgggcata
cctttaatcctggcaatcagagctatgtagtgagactgtctcaaaacagc
aagaactaaatgcaagcaatgaacatgagttatgaaaagggtataaagcg
aattgtttttctaactttttaaatgtttgtttatttgttttatgtatgtg
agtatgctgtagctgtcttcaga
gaattccaagtgaaggcaactctccaaaaagactcatagatgaaacaaat
agaaagagtaagaaacagggaagataaaactgcagaacacagtcatccca
atagatgcaccaaacacaaccaggaaacccaaaatcacatgagacgacct
tccgtgacagctgcacaggctcacaactcaactatgaaaaccaaagatgt
caagaacctgaaatgccaggaagatgcagaattccgtctctcaaaaacac
tacgggccatataggtgattcgggtaagacaatgaaataaggggattaat
tcaggacctagagaagagtgttactggtgtgggtgaaaccatcggtaatg
tgaaggataaattcaaaaggggaagataaagagcaagggaattgaaatgc
tgagaaaactgaacagaagctctggaaaggaaagaagcagtcagtcaaac
aagaaacacggcagagccacaatcaacacacaggcagaaaagtgaatgtc
aagagggaggccagggagagacaatccacaaagaaaaaatgcattgacca
aagttcagaagcttcaagactcactcaactaaccatagccaagaatttat
ggggtaaaaagaaaagagctgaacaaagtcttaaaagaacagcactttat
ttctgtgaaaggtaatagcagtaccacgtgcgcgtgctgcggtcacaccg
cagcctccaagcccaccaatttaaaggatattggttgtgggggctcctgc
agcatcaggcatcaggaatgactgcaagagatggaaattaaaacttagtt
cagctgacctagccaaccagatggacacactctcagaaatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4860394_4860648
seq2: B6Ng01-126N24.b_50_330 (reverse)

seq1  TGCTATGCACACTCCAGTGAAGTTT-------------------------  25
      ||||| |||||||||||||||||||                         
seq2  TGCTACGCACACTCCAGTGAAGTTTGCTTGGCAGGCCGAGAGGCCTGGGA  50

seq1  GCACTCACGAGGCAAAGAGTTTCATGGAAACTCACCTCCTGGAACTTTGG  75
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GCACTCACGAGGCAAAGAGTTTCACGGAAACTCACTTCCTGGAACTTTGG  100

seq1  CATTCTCATAACCCGTGTACTTATAACCTATCCCCAAGTTAGTCTGGTGT  125
      |||||||||||||||| |||| ||| |||||||||  |||||||||||||
seq2  CATTCTCATAACCCGTATACTCATACCCTATCCCCGTGTTAGTCTGGTGT  150

seq1  ATGGATCCACGTGCTCTCTTTTAGTATTATTTTATTATAAGTGCCTTTTA  175
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCCACGTGCTCTCTTTTAGTATTATTTTATTATAAGTGCCTTTTA  200

seq1  AGATTGAATTCTGACATAGCTAAGCCTTTGCCAGTGTTCCAACG-CCCAG  224
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGATTGAATTCTGACATAGCTAAGCCTTTGCCAGTATTCCAACGTCCCAG  250

seq1  AAAATTCTTGAAGCCGACAAACTGGGAATTC  255
      ||||| | |||||||||||||||  ||||||
seq2  AAAATCCATGAAGCCGACAAACTTAGAATTC  281

seq1: chr6_54713195_54714048
seq2: B6Ng01-126N24.g_69_912

seq1  GAATTCCAAGTGAAGGCAACTCTCCAAAAAGACTCATAGATGAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGAAGGCAACTCTCCAAAAAGACTCATAGATGAAACAAAT  50

seq1  AGAAAGAGTAAGAAACAGGGAAGATAAAACTGCAGAACACAGTCATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTAAGAAACAGGGAAGATAAAACTGCAGAACACAGTCATCCCA  100

seq1  ATAGATGCACCAAACACAACCAGGAAACCCAAAATCACATGAGACGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCACCAAACACAACCAGGAAACCCAAAATCACATGAGACGACCT  150

seq1  TCCGTGACAGCTGCACAGGCTCACAACTCAACTATGAAAACCAAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGACAGCTGCACAGGCTCACAACTCAACTATGAAAACCAAAGATGT  200

seq1  CAAGAACCTGAAATGCCAGGAAGATGCAGAATTCCGTCTCTCAAAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCTGAAATGCCAGGAAGATGCAGAATTCCGTCTCTCAAAAACAC  250

seq1  TACGGGCCATATAGGTGATTCGGGTAAGACAATGAAATAAGGGGATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGCCATATAGGTGATTCGGGTAAGACAATGAAATAAGGGGATTAAT  300

seq1  TCAGGACCTAGAGAAGAGTGTTACTGGTGTGGGTGAAACCATCGGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTAGAGAAGAGTGTTACTGGTGTGGGTGAAACCATCGGTAATG  350

seq1  TGAAGGATAAATTCAAAAGGGGAAGATAAAGAGCAAGGGAATTGAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATAAATTCAAAAGGGGAAGATAAAGAGCAAGGGAATTGAAATGC  400

seq1  TGAGAAAACTGAACAGAAGCTCTGGAAAGGAAAGAAGCAGTCAGTCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACTGAACAGAAGCTCTGGAAAGGAAAGAAGCAGTCAGTCAAAC  450

seq1  AAGAAACACGGCAGAGCCACAATCAACACACAGGCAGAAAAGTGAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACGGCAGAGCCACAATCAACACACAGGCAGAAAAGTGAATGTC  500

seq1  AAGAGGGAGGCCAGGGAGAGACAATCCACAAAGAAAAAATGCATTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGGCCAGGGAGAGACAATCCACAAAGAAAAAATGCATTGACCA  550

seq1  AAGTTCAGAAGCTTCAAGACTCACTCAACTAACCATAGCCAAGAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGAAGCTTCAAGACTCACTCAACTAACCATAGCCAAGAATTTAT  600

seq1  GGGGTAGAA--GAAAGAGCTGAACAAAGTC-TAAAAGAACAGGCACTTTA  647
      |||||| ||   |||||||||||||||||| |||||||||| ||||||||
seq2  GGGGTAAAAAGAAAAGAGCTGAACAAAGTCTTAAAAGAACA-GCACTTTA  649

seq1  -TTCTGTGAAAGGT-ATAGCAGTA-CACGTGCGCGTGCTGCGTGCACACA  694
       ||||||||||||| ||||||||| |||||||||||||||||  ||||| 
seq2  TTTCTGTGAAAGGTAATAGCAGTACCACGTGCGCGTGCTGCGGTCACAC-  698

seq1  CACACACACACACACAAGCACA-CAATTTAAAGGATA-TGGTTGTGGGGC  742
          | ||  | | ||||| || |||||||||||||| ||||||||||| 
seq2  ----CGCAGCCTC-CAAGCCCACCAATTTAAAGGATATTGGTTGTGGGGG  743

seq1  TCCCTGCAGGCATCAGGGCAATCAGGAAAATGAACTGCAAAGAAGTGACA  792
        |||||| ||||||||   ||||||  |||| ||||| ||||  ||  |
seq2  CTCCTGCA-GCATCAGG--CATCAGG--AATG-ACTGC-AAGAGATGGAA  786

seq1  ATAAAAACTCAGTTCAGCCTGACCTAGCCAACCAGATTGGACCAAACTTC  842
      || |||||| ||||||| |||||||||||||||||| |||| || || ||
seq2  ATTAAAACTTAGTTCAG-CTGACCTAGCCAACCAGA-TGGA-CACAC-TC  832

seq1  TAGGAAATCTGA  854
      |  |||||||||
seq2  TCAGAAATCTGA  844