BAC Information

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BAC

Clone NameB6Ng01-126O11
Chromosome6 (Build37)
Map Location 85,684,531 - 85,685,261
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134
Downstream geneLOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126O11.bB6Ng01-126O11.g
ACCDH929156DH929157
length1,171781
definitionDH929156|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O11, 5' end.DH929157|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaagtgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccaa
tgaggagctagagaaagtagccaagagctaaagggatctgcaaccctata
ggtggacacatatgagctaccagtaccccgagctcttgactctagctgca
tatatatcaaagatggcctagtctgcatcacctgaagagaggcccattga
cttgccaaactttattgccagtacaaggacccaggctatatgggggatgt
ggttggcaaggggaatggggt
gaattcacaactgcatcacggggaaggagcggttaataaagtgttcccat
aaaacagactgctgagaaggatccggtgtggattcagaactcttcacctg
cggaacggtggtaatgaagtgttcctgcaaaacagactgttgagaaggat
tcaactgcgtggattcagaactcttcagctggggaacggtggtaccagta
agtaaaaagaaattaatgtgagtctttgagaggtatgctttcctacgcag
taggtccggtaattgttgctagggttgtgaagggcagtgagttttgcagg
agtaccaagaaggcatatcagaaacagagagaaatgaaaaagaagacacg
cgcagaaaaataagtaacttaagaaatatagatagaaaaataagggaagc
taaaatataaagatacaaaggatacaaaggataatataaaaaatgaagaa
caaaaaactaagtcaatttaccctcctctcgaggactttgactaaagagg
cagccttcatcaaaggcttaaagatagctctcagggaaagaggagtaaaa
catccactgtgcagatttcccagaagaaggagaaaaaatgaaaataagct
atttcagagctctcatagggacagaaggaaaacgggagacgtcctgcttc
ctctctggctcctatggagatatttttagctccggatagggatatctgtg
tccctttgaaacatcaagttctatcatctgttttttggtgcaccatattg
gcctatatgtctgtcaattccatgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85684531_85685261
seq2: B6Ng01-126O11.g_72_850

seq1  ATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATAAAGTGTTCTCATAA  50
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCACAACTGCATCACGGGGAAGGAGCGGTTAATAAAGTGTTCCCATAA  50

seq1  AACAGACTGC----------------------------------------  60
      ||||||||||                                        
seq2  AACAGACTGCTGAGAAGGATCCGGTGTGGATTCAGAACTCTTCACCTGCG  100

seq1  --------------------------------------TGAGAAGGATTC  72
                                            ||||||||||||
seq2  GAACGGTGGTAATGAAGTGTTCCTGCAAAACAGACTGTTGAGAAGGATTC  150

seq1  AACTGCGTGGATTCAGAACTCTTCAGCTGGGGAACAGTGGTACCGGTAAG  122
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AACTGCGTGGATTCAGAACTCTTCAGCTGGGGAACGGTGGTACCAGTAAG  200

seq1  TAAAAAGAAATTAATGTGAGTCTCTGAGAGGTATGCTTTCCTACGCAGTA  172
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAAAAGAAATTAATGTGAGTCTTTGAGAGGTATGCTTTCCTACGCAGTA  250

seq1  GGTCCGGTAATTATTGCTAGGGTTGTGAAGGGCAGCGACTTTTGCAGGAG  222
      |||||||||||| |||||||||||||||||||||| || |||||||||||
seq2  GGTCCGGTAATTGTTGCTAGGGTTGTGAAGGGCAGTGAGTTTTGCAGGAG  300

seq1  TACCAAGAAGGCATATCAGAAACAGAGAGAAATGAAAAAAAAGACGCACA  272
      ||||||||||||||||||||||||||||||||||||||| ||||| | | 
seq2  TACCAAGAAGGCATATCAGAAACAGAGAGAAATGAAAAAGAAGACACGCG  350

seq1  CAGAAAAATATATAACTTAAGAAATATAAAGAGAGAAAAAGAAAGGAAGC  322
      ||||||||||  |||||||||||||||  ||| ||||||| || ||||||
seq2  CAGAAAAATAAGTAACTTAAGAAATAT--AGATAGAAAAATAAGGGAAGC  398

seq1  TAAAATATAAAGATACAAAGGATACAAAGGATAATATAAAATATAAATTT  372
      ||||||||||||||||||||||                           |
seq2  TAAAATATAAAGATACAAAGGA---------------------------T  421

seq1  ACAAAGGATAATATAAAAAATGAAGAACAAAAAATTAAGTTAATTTACCC  422
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  ACAAAGGATAATATAAAAAATGAAGAACAAAAAACTAAGTCAATTTACCC  471

seq1  TCCTTTCGAGGACTTTGACTAAAGAGGCAGCTTTCATCAAAGGCTTAAAG  472
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTCTCGAGGACTTTGACTAAAGAGGCAGCCTTCATCAAAGGCTTAAAG  521

seq1  ATAGCTCTCAGGAAAAGAGGAGTAACTACTAGAAGCAGCCACTGTGTAGA  522
      |||||||||||| |||||||||||        || || |||||||| |||
seq2  ATAGCTCTCAGGGAAAGAGGAGTA--------AAACATCCACTGTGCAGA  563

seq1  ATTCC---AAGAAGGAGAAAAAATGAAAATAAGCTATTTCAGAGCTCTCA  569
       ||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGAAGAAGGAGAAAAAATGAAAATAAGCTATTTCAGAGCTCTCA  613

seq1  CAGGGACAGAAGGAAAACGGGAGACGTCCTGCTTCCTCTCTGGCTCCTAT  619
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACAGAAGGAAAACGGGAGACGTCCTGCTTCCTCTCTGGCTCCTAT  663

seq1  GGAGATGTTTTTAGCTCCGGATA-GGATATCTGTGTCCCTTTGAGACATC  668
      |||||| |||||||||||||||| |||||||||||||||||||| |||||
seq2  GGAGATATTTTTAGCTCCGGATAGGGATATCTGTGTCCCTTTGAAACATC  713

seq1  AAGGTCTATTGTCTG-TTTTTGGTGCACCAAATT-GTCTATATGTCTGTC  716
      ||| |||||  |||| |||||||||||||| ||| | |||||||||||||
seq2  AAGTTCTATCATCTGTTTTTTGGTGCACCATATTGGCCTATATGTCTGTC  763

seq1  AATT-CATGTTTGTTT  731
      |||| |||||||||||
seq2  AATTCCATGTTTGTTT  779