BAC Information

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BAC

Clone NameB6Ng01-127B21
Chromosome6 (Build37)
Map Location 32,008,344 - 32,131,068
singlet/doubletdoublet
Overlap gene1700012A03Rik, Plxna4
Upstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
Downstream geneChchd3, LOC100039118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B21.bB6Ng01-127B21.g
ACCDH929319DH929320
length1,127891
definitionDH929319|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B21, 5' end.DH929320|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,008,344 - 32,009,484)(32,130,181 - 32,131,068)
sequence
gaattccaaattctgttttttaaaaaaaggcaagaagtcaaacagaggat
tttaaaattagcttcatggttggcaaattagaagaattagaagaagaaga
ttacactcaaagatcttctctttaaatcttctcctctagttcaagatctg
gagtcactctagaggagcggtgagtaagagaaagcaaagagtctgcagaa
acaagcctgctgcagaagagggcgcagagagaagcctgctgcagaagtgg
ctgcagagagatgcctgctgcagagagaagcctcctggccagagaagcct
gctggagaagtggctgcagagagatgcctgctgcagaaatgactgcagag
aggagaaggttgctgtaaaagccactgtagagacaagtgtagcaccttat
cagggccaagaagccaccttctcacctgacccttgaacattctactctcc
cagtgagagagaggtgccggagggatgggcaagaaggtggcagaaggctt
ccttccagggcttcagcaaagtttggactaggatgaggtagaaaggcatt
aaaggttcccacagcttcctgctaaaaatgtttacttggggagatggcaa
ctacggcagctactccaaagctgagaggtcaccgggggtcttccagatgc
ttcgcaaagttattttcaaaacccctggatgtcttcccacaatacattat
agtatacacatttattatatgttattgtacataagagcaatatgtggtag
tgaaggccagcactgggggatacattcaatggtagaggcttggttagcat
gcatggagtcctaggtttaatgcctgaatgttgaaaaagaaaaaacatcc
tgttaaccacagagtcggagggtgcataggcaacagtgagggagccctgc
acagatcagtatctcctcacttctaccaagcccacagtcagtttttatgc
tcatacacattttatacatttttgtaggtttggttatggatcaggagagc
ttatatgtccatactatagtgctatagagagttgttttcactgttctggg
cttgtgtgctttgaagcaagcctctcccacctgcacccccacatggttcc
aacagatgttgaaggtttcagtcaaca
gaattcagtggactttggctgaccactcattcagttgggaacatctggaa
tgggagagagatgggagatgattttgcttaaggatggcaggatggtaggg
aagggtgttcctacatgtgaaggactccatccagtgaggatgcaggaaga
cagtcctgcaccaggacagacagagcaatggagactcccactgagcaaat
caatgcagaagtgggagctgtgggagtgtgcagtgactggaggaagcgca
ggagctctgagtttgctggtagtgaaccttgtcctgctggaacttgagtt
agcacaaccacgggagtgctccaggaccacattaccagggagcctgctgg
agtgttagacactcacccggttatctgccagagagcttgccagaagactg
gatgcctgctaggttacctgcttgagtgctagacacctgagaacttgcta
tagagtataagatacatacctggttatctgccagagtattagatgtgtgt
cccccaggagcccagtagctgtctccatgtcccccactcctccaggagcc
tcctagagtgctacactccttcccaggaacctagcagaatgttaaatgtt
ccccgaaagaccaccagatggctaggacctctctaggaaatcttcagagc
aagcaccaggtgagcgattctgaagagccaggagtagaagacacgtttct
aagcctgggatcctatcttcgtgagcggatgcttttttctctaaagatca
ggtcccagtcctgaaaacatggcaaagacagttcacccttaagtatccgt
ctctgctctcatggatccttcctggccatagttcagaccaggtcattttg
ctgcccagaggagctgaaactgccattcatggccttgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32008344_32009484
seq2: B6Ng01-127B21.b_46_1172

seq1  GAATTCCAAATTCTGTTTTTTAAAAAAAGGCAAGAAGTCAAACAGAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTCTGTTTTTTAAAAAAAGGCAAGAAGTCAAACAGAGGAT  50

seq1  TTTAAAATTAGCTTCATGGTTGGCAAATTAGAAGAATTAGAAGAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTAGCTTCATGGTTGGCAAATTAGAAGAATTAGAAGAAGAAGA  100

seq1  TTACACTCAAAGATCTTCTCTTTAAATCTTCTCCTCTAGTTCAAGATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCAAAGATCTTCTCTTTAAATCTTCTCCTCTAGTTCAAGATCTG  150

seq1  GAGTCACTCTAGAGGAGCGGTGAGTAAGAGAAAGCAAAGAGTCTGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTCTAGAGGAGCGGTGAGTAAGAGAAAGCAAAGAGTCTGCAGAA  200

seq1  ACAAGCCTGCTGCAGAAGAGGGCGCAGAGAGAAGCCTGCTGCAGAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTGCTGCAGAAGAGGGCGCAGAGAGAAGCCTGCTGCAGAAGTGG  250

seq1  CTGCAGAGAGATGCCTGCTGCAGAGAGAAGCCTCCTGGCCAGAGAAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAGATGCCTGCTGCAGAGAGAAGCCTCCTGGCCAGAGAAGCCT  300

seq1  GCTGGAGAAGTGGCTGCAGAGAGATGCCTGCTGCAGAAATGACTGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAAGTGGCTGCAGAGAGATGCCTGCTGCAGAAATGACTGCAGAG  350

seq1  AGGAGAAGGTTGCTGTAAAAGCCACTGTAGAGACAAGTGTAGCACCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGTTGCTGTAAAAGCCACTGTAGAGACAAGTGTAGCACCTTAT  400

seq1  CAGGGCCAAGAAGCCACCTTCTCACCTGACCCTTGAACATTCTACTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAGAAGCCACCTTCTCACCTGACCCTTGAACATTCTACTCTCC  450

seq1  CAGTGAGAGAGAGGTGCCGGAGGGATGGGCAAGAAGGTGGCAGAAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGAGAGGTGCCGGAGGGATGGGCAAGAAGGTGGCAGAAGGCTT  500

seq1  CCTTCCAGGGCTTCAGCAAAGTTTGGACTAGGATGAGGTAGAAAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGGCTTCAGCAAAGTTTGGACTAGGATGAGGTAGAAAGGCATT  550

seq1  AAAGGTTCCCACAGCTTCCTGCTAAAAATGTTTACTTGGGGAGATGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCCACAGCTTCCTGCTAAAAATGTTTACTTGGGGAGATGGCAA  600

seq1  CTACGGCAGCTACTCCAAAGCTGAGAGGTCACCGGGGGTCTTCCAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGCAGCTACTCCAAAGCTGAGAGGTCACCGGGGGTCTTCCAGATGC  650

seq1  TTCGCAAAGTTATTTTCAAAACCCCTGGATGTCTTCCCACAATACATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAAGTTATTTTCAAAACCCCTGGATGTCTTCCCACAATACATTAT  700

seq1  AGTATACACATTTATTATATGTTATTGTACATAAGAGCAATATGTGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACACATTTATTATATGTTATTGTACATAAGAGCAATATGTGGTAG  750

seq1  TGAAGGCCAGCACTGGGGGATACATTCAATGGTAGAGGCTTGGTTAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCAGCACTGGGGGATACATTCAATGGTAGAGGCTTGGTTAGCAT  800

seq1  GCATGGAGTCCTAGGTTTAATGCCTGAATGTTGAAAAAGAAAAAACATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGTCCTAGGTTTAATGCCTGAATGTTGAAAAAGAAAAAACATCC  850

seq1  TGTTAACCACAGAGTCGGAGGGTGCATAGGCAACAGTGAGGGAGCCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCACAGAGTCGGAGGGTGCATAGGCAACAGTGAGGGAGCCCTGC  900

seq1  ACAGATCAGTATCTCCTCACTTCTACCAAGCCCACAGTCAGTTTTTATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAGTATCTCCTCACTTCTACCAAGCCCACAGTCAGTTTTTATGC  950

seq1  TCATAACACATTTTAATACAATTTTTGTAGGTTTGGTTTATGGATCAAGG  1000
      |||| ||||||||| |||| |||||||||||||||| ||||||||||  |
seq2  TCAT-ACACATTTT-ATAC-ATTTTTGTAGGTTTGG-TTATGGATCA--G  994

seq1  GAGAAGCTTATTATGTCCCATACTATAGTGCTATAGAAGAATTTGTTTTC  1050
      ||| |||||| ||||| ||||||||||||||||||||   | ||||||||
seq2  GAG-AGCTTA-TATGT-CCATACTATAGTGCTATAGA--GAGTTGTTTTC  1039

seq1  AACTGTTCTGGGC-TGTGTGCTTTGGAAGCCAGCCTCCCCCACCTGCACC  1099
       |||||||||||| |||||||||| ||||| |||||| ||||||||||||
seq2  -ACTGTTCTGGGCTTGTGTGCTTT-GAAGCAAGCCTCTCCCACCTGCACC  1087

seq1  CCCACCATG--TCCAAACCAGGTTGTGGAAGTTTTCAGTCAACA  1141
      |||| ||||  |||||  || | ||| |||| ||||||||||||
seq2  CCCA-CATGGTTCCAA--CA-GATGTTGAAGGTTTCAGTCAACA  1127

seq1: chr6_32130181_32131068
seq2: B6Ng01-127B21.g_66_956 (reverse)

seq1  TTTGCCAGGCCATTGATGGGCAG-TTCAGCCTCCTCTGGGCAGCAAAATG  49
      ||||| |||||| |||  ||||| ||||| ||||||||||||||||||||
seq2  TTTGCAAGGCCA-TGAATGGCAGTTTCAG-CTCCTCTGGGCAGCAAAATG  48

seq1  GCCTTGTCTGAACTCTTTGCCAGGAAGGAT-CATG-GAGCAGAGACGGAT  97
       ||| |||||||||  | |||||||||||| |||| ||||||||||||||
seq2  ACCTGGTCTGAACT-ATGGCCAGGAAGGATCCATGAGAGCAGAGACGGAT  97

seq1  ACTTAAGGGTGAACTGTCTTTG-CATGTTTTCAGG-CCGGGA-CTGATCT  144
      |||||||||||||||||||||| |||||||||||| | |||| |||||||
seq2  ACTTAAGGGTGAACTGTCTTTGCCATGTTTTCAGGACTGGGACCTGATCT  147

seq1  TTGAGAG-AAAAAGCATTCGCTCACGAAAGATAGGATCCCAGGCTTAGAA  193
      || |||| ||||||||| |||||||| |||||||||||||||||||||||
seq2  TT-AGAGAAAAAAGCATCCGCTCACG-AAGATAGGATCCCAGGCTTAGAA  195

seq1  ACGTGTCTTCTACTCCTGGCTCTTCAGAATCGCTCACCTGGTGCTTGCTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCTTCTACTCCTGGCTCTTCAGAATCGCTCACCTGGTGCTTGCTC  245

seq1  TGAAGA-TTCCTAGAGAGGTTCTAGCCATCTGGTGGTCTTTCGGGGAACA  292
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAGATTTCCTAGAGAGGTCCTAGCCATCTGGTGGTCTTTCGGGGAACA  295

seq1  TTTAACATTCTGCTAGGTTCCTGGGAAGGAGTGTAGCACTCTAGGAGGCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTCTGCTAGGTTCCTGGGAAGGAGTGTAGCACTCTAGGAGGCT  345

seq1  CCTGGAGGAGTGGGGGACATGGAGACAGCTACTGGGCTCCTGGGGGACAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAGTGGGGGACATGGAGACAGCTACTGGGCTCCTGGGGGACAC  395

seq1  ACATCTAATACTCTGGCAGATAACCAGGTATGTATCTTATACTCTATAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAATACTCTGGCAGATAACCAGGTATGTATCTTATACTCTATAGC  445

seq1  AAGTTCTCAGGTGTCTAGCACTCAAGCAGGTAACCTAGCAGGCATCCAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCAGGTGTCTAGCACTCAAGCAGGTAACCTAGCAGGCATCCAGT  495

seq1  CTTCTGGCAAGCTCTCTGGCAGATAACCGGGTGAGTGTCTAACACTCCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCAAGCTCTCTGGCAGATAACCGGGTGAGTGTCTAACACTCCAG  545

seq1  CAGGCTCCCTGGTAATGTGGTCCTGGAGCACTCCCGTGGTTGTGCTAACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCTGGTAATGTGGTCCTGGAGCACTCCCGTGGTTGTGCTAACT  595

seq1  CAAGTTCCAGCAGGACAAGGTTCACTACCAGCAAACTCAGAGCTCCTGCG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAGCAGGACAAGGTTCACTACCAGCAAACTCAGAGCTCCTGCG  645

seq1  CTTCCTCCAGTCACTGCACACTCCCACAGCTCCCACTTCTGCATTGATTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAGTCACTGCACACTCCCACAGCTCCCACTTCTGCATTGATTT  695

seq1  GCTCAGTGGGAGTCTCCATTGCTCTGTCTGTCCTGGTGCAGGACTGTCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGAGTCTCCATTGCTCTGTCTGTCCTGGTGCAGGACTGTCTT  745

seq1  CCTGCATCCTCACTGGATGGAGTCCTTCACATGTAGGAACACCCTTCCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCCTCACTGGATGGAGTCCTTCACATGTAGGAACACCCTTCCCT  795

seq1  ACCATCCTGCCATCCTTAAGCAAAATCATCTCCCATCTCTCTCCCATTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGCCATCCTTAAGCAAAATCATCTCCCATCTCTCTCCCATTCC  845

seq1  AGATGTTCCCAACTGAATGAGTGGTCAGCCAAAGTCCACTGAATTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCCAACTGAATGAGTGGTCAGCCAAAGTCCACTGAATTC  891