BAC Information

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BAC

Clone NameB6Ng01-127O21
Chromosome6 (Build37)
Map Location 84,998,641 - 85,092,430
singlet/doubletdoublet
Overlap geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr
Upstream geneDysf, 4930504D19Rik, Cyp26b1, LOC665129
Downstream geneLOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O21.bB6Ng01-127O21.g
ACCDH929915DH929916
length1,109922
definitionDH929915|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O21, 5' end.DH929916|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,091,292 - 85,092,430)(84,998,641 - 84,999,566)
sequence
gaattctctgtctccccgtactaaatgtagggattacacgatctacctgc
caagcctggtttatttggttgtggggaagaaacccagggcttcctgcctg
ctgggcaagagctgttctaactgaggggtcacacctggaggtcaggctag
cctgggactcactcagaaagtgaggatgttcttgaattcttgatcttcct
gccttcacagtctacacaggtctacaccactgatgctgttttctttcttc
cttccttccctcccttctagatgacttatttttcctactgagaatatgtc
ccagtactacagacgtgagctgtagccggacttcccccttctgaagctgc
tgagctgttagctggtggagggagggacaggaggctgtcccagtcccatg
ccatcccaaagaaacccaggtcaacatgcagaagttttcaggactgtccc
ctgtgtggccaggtggctttgtagtcaggtgtgttctgactacagccctg
agctaacctcatctaacttctccatggagcaccatggccagaagagaagg
cacaagccactacaagcctgagctcaaacatgcaactggcaaaataggaa
gatggggtctcatgcccactgtttgcaggtttagtcccctcaccccttgg
gcgatctcacctgtgtcacgtttagccagttctacggaatttgtggattt
tccctgagactggaaatcagaactaggatcaaggacatcttccaacacag
agtttgaggccagtctagaatgcatgacattctctttaaaaacaaacacc
ccctgccccaaatcttatgcccaagtctgagaaaagtgacacggtggctc
acaatggccacatattccccgtgaatcagaagtcctctctattggaaaga
agaaaaccggcatctatatgtgcagtcattatttcctgtgactcacatct
gggttggcctgagcatcgagttcctcccctgtgcacagcagtgaggagct
atgaagtaaggactctgctgggccggtggggaggttactggggatctcct
gccagccagtgctcccttgctctccctggtggggaagcaataagaacgta
tgccatcca
gaattcatagcctatggaaagaaacatgaaggaatacacagaacaggaaa
tcgcagtaacagaatgtaaccagcatggagttttaggatcacaggtggca
gcaccacagctgattgagagtttctagtgagaagtaaaacatttaggaaa
gagctgcatctcatcgagaacttgaagtaccaggattatgcactaaaggt
gaaaggagaaaaggagatgaaatgtgaagcaagaacaggggccagcatta
agtataaaatccatgtactttcccggagaactcactagcctagcgtggga
atatcagcgcttctcaaccctggcagaaaggcaaaggtctacggcacaaa
attttctatcattgagaatgattctgagttacattataaagaaatacaga
gataggatttacacaaaatactgagtctagagatggattaaaggaagaaa
actctaggttagggtatggtggctaggtttctggttccaccagcagtttt
ggaagtaaaagggaaaaaccatcttcctacccagtaagtctcagtacact
accagcacacatgccctctccctggcactctgcctcaaaaggtaatcaca
gtttggaggaaaagctctcctgggcatctcctctcaactctactgactca
gtcttcaacctcaccaatttcactcagcctcgggggatcacccatgaata
gagagaatttacctagaggtttacaggtacacccacaaagtacttcccag
taagtcaaagttaatgctgagcagatatattctcagctggtgccactttt
cagaggtgacactggtggtattgatcctaactgcagaactgaacaggctg
agaagaaaagtatctgagcccagccagcctgcctacacgttagttcaaat
aagaccttaggaaatcttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85091292_85092430
seq2: B6Ng01-127O21.b_49_1157 (reverse)

seq1  TGGATGTATACGTCCTTATTGCTTCCCACAGGGAGCACTGGAT-GCATAC  49
                                            ||||| ||||||
seq2  --------------------------------------TGGATGGCATAC  12

seq1  GTCCTTATTGCTTCCC--ACAGGGAGAGCAA-GGAGCACTGGCT-GCA-G  94
      || |||||||||||||   |||||||||||| |||||||||||| ||| |
seq2  GTTCTTATTGCTTCCCCACCAGGGAGAGCAAGGGAGCACTGGCTGGCAGG  62

seq1  AGATCCCCAGT-ACCT-CCCACCGGGCCAGCAGAGTCCTTACTTCATAGC  142
      ||||||||||| |||| |||||||| ||||||||||||||||||||||||
seq2  AGATCCCCAGTAACCTCCCCACCGGCCCAGCAGAGTCCTTACTTCATAGC  112

seq1  TCCTCACTGCTGTGCACAGGGGAGGAACTCGATGCTCAGGCCAACCCAGA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGCTGTGCACAGGGGAGGAACTCGATGCTCAGGCCAACCCAGA  162

seq1  TGTGAGTCACAGGAAATAATGACTGCACATATAGATGCCGGTTTTCTTCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCACAGGAAATAATGACTGCACATATAGATGCCGGTTTTCTTCT  212

seq1  TTCCAATAGAGAGGACTTCTGATTCACGGGGAATATGTGGCCATTGTGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAGAGAGGACTTCTGATTCACGGGGAATATGTGGCCATTGTGAG  262

seq1  CCACCGTGTCACTTTTCTCAGACTTGGGCATAAGATTTGGGGCAGGGGGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTGTCACTTTTCTCAGACTTGGGCATAAGATTTGGGGCAGGGGGT  312

seq1  GTTTGTTTTTAAAGAGAATGTCATGCATTCTAGACTGGCCTCAAACTCTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTAAAGAGAATGTCATGCATTCTAGACTGGCCTCAAACTCTG  362

seq1  TGTTGGAAGATGTCCTTGATCCTAGTTCTGATTTCCAGTCTCAGGGAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAGATGTCCTTGATCCTAGTTCTGATTTCCAGTCTCAGGGAAAA  412

seq1  TCCACAAATTCCGTAGAACTGGCTAAACGTGACACAGGTGAGATCGCCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAATTCCGTAGAACTGGCTAAACGTGACACAGGTGAGATCGCCCA  462

seq1  AGGGGTGAGGGGACTAAACCTGCAAACAGTGGGCATGAGACCCCATCTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGGGGACTAAACCTGCAAACAGTGGGCATGAGACCCCATCTTC  512

seq1  CTATTTTGCCAGTTGCATGTTTGAGCTCAGGCTTGTAGTGGCTTGTGCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGCCAGTTGCATGTTTGAGCTCAGGCTTGTAGTGGCTTGTGCCT  562

seq1  TCTCTTCTGGCCATGGTGCTCCATGGAGAAGTTAGATGAGGTTAGCTCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGCCATGGTGCTCCATGGAGAAGTTAGATGAGGTTAGCTCAG  612

seq1  GGCTGTAGTCAGAACACACCTGACTACAAAGCCACCTGGCCACACAGGGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGTCAGAACACACCTGACTACAAAGCCACCTGGCCACACAGGGG  662

seq1  ACAGTCCTGAAAACTTCTGCATGTTGACCTGGGTTTCTTTGGGATGGCAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGAAAACTTCTGCATGTTGACCTGGGTTTCTTTGGGATGGCAT  712

seq1  GGGACTGGGACAGCCTCCTGTCCCTCCCTCCACCAGCTAACAGCTCAGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGACAGCCTCCTGTCCCTCCCTCCACCAGCTAACAGCTCAGCA  762

seq1  GCTTCAGAAGGGGGAAGTCCGGCTACAGCTCACGTCTGTAGTACTGGGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAAGGGGGAAGTCCGGCTACAGCTCACGTCTGTAGTACTGGGAC  812

seq1  ATATTCTCAGTAGGAAAAATAAGTCATCTAGAAGGGAGGGAAGGAAGGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCAGTAGGAAAAATAAGTCATCTAGAAGGGAGGGAAGGAAGGAA  862

seq1  GAAAGAAAACAGCATCAGTGGTGTAGACCTGTGTAGACTGTGAAGGCAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAACAGCATCAGTGGTGTAGACCTGTGTAGACTGTGAAGGCAGG  912

seq1  AAGATCAAGAATTCAAGAACATCCTCACTTTCTGAGTGAGTCCCAGGCTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAGAATTCAAGAACATCCTCACTTTCTGAGTGAGTCCCAGGCTA  962

seq1  GCCTGACCTCCAGGTGTGACCCCTCAGTTAGAACAGCTCTTGCCCAGCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTCCAGGTGTGACCCCTCAGTTAGAACAGCTCTTGCCCAGCAG  1012

seq1  GCAGGAAGCCCTGGGTTTCTTCCCCACAACCAAATAAACCAGGCTTGGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCCCTGGGTTTCTTCCCCACAACCAAATAAACCAGGCTTGGCA  1062

seq1  GGTAGATCGTGTAATCCCTACATTTAGTACGGGGAGACAGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCGTGTAATCCCTACATTTAGTACGGGGAGACAGAGAATTC  1109

seq1: chr6_84998641_84999566
seq2: B6Ng01-127O21.g_71_992

seq1  GAATTCATAGCCTATGGAAAGAAACATGAAGGAATACACAGAACAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCTATGGAAAGAAACATGAAGGAATACACAGAACAGGAAA  50

seq1  TCGCAGTAACAGAATGTAACCAGCATGGAGTTTTAGGATCACAGGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGTAACAGAATGTAACCAGCATGGAGTTTTAGGATCACAGGTGGCA  100

seq1  GCACCACAGCTGATTGAGAGTTTCTAGTGAGAAGTAAAACATTTAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAGCTGATTGAGAGTTTCTAGTGAGAAGTAAAACATTTAGGAAA  150

seq1  GAGCTGCATCTCATCGAGAACTTGAAGTACCAGGATTATGCACTAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCATCTCATCGAGAACTTGAAGTACCAGGATTATGCACTAAAGGT  200

seq1  GAAAGGAGAAAAGGAGATGAAATGTGAAGCAAGAACAGGGGCCAGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAAAAGGAGATGAAATGTGAAGCAAGAACAGGGGCCAGCATTA  250

seq1  AGTATAAAATCCATGTACTTTCCCGGAGAACTCACTAGCCTAGCGTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAATCCATGTACTTTCCCGGAGAACTCACTAGCCTAGCGTGGGA  300

seq1  ATATCAGCGCTTCTCAACCCTGGCAGAAAGGCAAAGGTCTACGGCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCGCTTCTCAACCCTGGCAGAAAGGCAAAGGTCTACGGCACAAA  350

seq1  ATTTTCTATCATTGAGAATGATTCTGAGTTACATTATAAAGAAATACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATCATTGAGAATGATTCTGAGTTACATTATAAAGAAATACAGA  400

seq1  GATAGGATTTACACAAAATACTGAGTCTAGAGATGGATTAAAGGAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATTTACACAAAATACTGAGTCTAGAGATGGATTAAAGGAAGAAA  450

seq1  ACTCTAGGTTAGGGTATGGTGGCTAGGTTTCTGGTTCCACCAGCAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGTTAGGGTATGGTGGCTAGGTTTCTGGTTCCACCAGCAGTTTT  500

seq1  GGAAGTAAAAGGGAAAAACCATCTTCCTACCCAGTAAGTCTCAGTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAAAAGGGAAAAACCATCTTCCTACCCAGTAAGTCTCAGTACACT  550

seq1  ACCAGCACACATGCCCTCTCCCTGGCACTCTGCCTCAAAAGGTAATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACACATGCCCTCTCCCTGGCACTCTGCCTCAAAAGGTAATCACA  600

seq1  GTTTGGAGGAAAAGCTCTCCTGGGCATCTCCTCTCAACTCTACTGACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGAAAAGCTCTCCTGGGCATCTCCTCTCAACTCTACTGACTCA  650

seq1  GTCTTCAACCTCACCAATTTCACTCAGCCTCGGGGGATCACCCATGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAACCTCACCAATTTCACTCAGCCTCGGGGGATCACCCATGAATA  700

seq1  AGAAGAGAATTTACCTAGAGGTTTACAGGTACA-CCACAAAGTACTTCCC  749
         |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  --GAGAGAATTTACCTAGAGGTTTACAGGTACACCCACAAAGTACTTCCC  748

seq1  AGTAAGTCAAAGTTAATGCTGAGCAGATATA-TCTCAAGCTGGTG-CACT  797
      ||||||||||||||||||||||||||||||| |||| |||||||| ||||
seq2  AGTAAGTCAAAGTTAATGCTGAGCAGATATATTCTC-AGCTGGTGCCACT  797

seq1  TTTCAGAGGTGGACACTGGTGGTATTGGATCCTAACTGCAGAACTGAACA  847
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TTTCAGAGGT-GACACTGGTGGTATT-GATCCTAACTGCAGAACTGAACA  845

seq1  GGCTGAG-AGAAAAGGATCTGAGCCCAGGCAGCCTGGCCTACACGTTAGG  896
      ||||||| ||||||| |||||||||||| |||||| |||||||||||| |
seq2  GGCTGAGAAGAAAAGTATCTGAGCCCAGCCAGCCT-GCCTACACGTTA-G  893

seq1  TTCAAATACAGACCTCAGGAAATCTTAAAA  926
      |||||||| |||||| ||||||||||||||
seq2  TTCAAATA-AGACCTTAGGAAATCTTAAAA  922