BAC Information

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BAC

Clone NameB6Ng01-128G11
Chromosome6 (Build37)
Map Location 86,139,227 - 86,275,755
singlet/doubletdoublet
Overlap geneTgfa, LOC665233, LOC100043094
Upstream geneEmx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Downstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128G11.bB6Ng01-128G11.g
ACCDH930263DH930264
length7471,041
definitionDH930263|Mus musculus domesticus DNA, BAC clone: B6Ng01-128G11, 5' end.DH930264|Mus musculus domesticus DNA, BAC clone: B6Ng01-128G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,139,227 - 86,139,973)(86,274,696 - 86,275,755)
sequence
gaattccatggcaatggctttgtggtctttggcattgtccgacaaacatc
aatatgacaaggttcatttggaagcaccctgactctcctttcctcatcat
ctcccacagagcagaagggcttgcccaaagtcaggttcctgggaaacaac
aggctctcagcgaaagctgtattacaaacaggagcggacacagtgaagaa
gccattgcctgcacagactcctaccacagggacgctgaccatccctgggc
tctcatcatcaattagaaggctgctaagccttctctccagctgacctgat
ccctctggtgtctgatctctcctctcgcagcttttggtcagtgccatagg
cgccactctgtccttgcttcccacatgctcctcatgcaatttgaaagttg
gctgtgaggacacacttgcctgtcagtacagatatgtcctgatatttgca
gtctctctgaacgaagtctccatctccatggagatgtgagatatatctcc
tccctccttcctgctacctctggtttgggacagaagaccagagtctcctt
tgtcaccctctgctgtcttcctgagcatcctgttaaaaatattttgactg
ttgtctgtcttatctgtcctgtttttcatttcccctttcctttgacctta
gggagaatttattgagttcatcgggtagtgatgagcaagtcccatttgcc
ttgatttttctgtcctttatctttaggtgtgtgtgtgtgtgtgtgtg
gaattcatagctgcacaaagtgtcatcaatagggagatgggggatccagg
gagacttgaagggtattggttttcatggtttctggagtcgaccatgatgt
agaaaaccgctaccaactgttgggatgagtctttggaggtggctctgttt
tcaaagttcttttttttcttttttccttttaattattagaattctttttt
tattagatattttcttcatttacatttcaaatgctatctcctttcccagt
ttcctctctgaacgtcccttataccctccccgtcctgcttcctaatacaa
agatctttttcttgctccttcctcttctcatgtgtcttcttcttgagctc
ctagttcccatgttatagccagtcactgctttctctgtattccccatgct
atagccagtcactgctttctctgtattccccatgttatagccagtcactg
ctttctctgtattccccatgttatagccagtcactgctttgtctgtattc
cccatgctatagccagtcactgctttctctgtattccccatgctatagcc
agtccctgctttctctattccccatgttatagccagtcactgctttctct
gtattccccatgctatagccagtcactgctttctctgtattccccatgtt
atagccagtcactgcttttctctgtattccccatgctatagccagtcact
gcttttctctgtattccccatgtttatagccagtcactgctttctctgta
ttccccatgctatagccagtcactgctttctctgtattctggcttgtgca
gtcaggcccttctcagtgcttcctcatatgaaggctttctgacagacttc
accaggtggggcagtggctcagccatccacctcatctatacacaggagcc
tgggcaaggctgaagcttgggctggcatacagagaatgggcttgctagaa
tgtttctttactgttcctcttgtaggttggactcgccagtctgggccact
ttctcagttctatcagcagtcagctgattcatccattttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86139227_86139973
seq2: B6Ng01-128G11.b_48_794

seq1  GAATTCCATGGCAATGGCTTTGTGGTCTTTGGCATTGTCCGACAAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGCAATGGCTTTGTGGTCTTTGGCATTGTCCGACAAACATC  50

seq1  AATATGACAAGGTTCATTTGGAAGCACCCTGACTCTCCTTTCCTCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACAAGGTTCATTTGGAAGCACCCTGACTCTCCTTTCCTCATCAT  100

seq1  CTCCCACAGAGCAGAAGGGCTTGCCCAAAGTCAGGTTCCTGGGAAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACAGAGCAGAAGGGCTTGCCCAAAGTCAGGTTCCTGGGAAACAAC  150

seq1  AGGCTCTCAGCGAAAGCTGTATTACAAACAGGAGCGGACACAGTGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCAGCGAAAGCTGTATTACAAACAGGAGCGGACACAGTGAAGAA  200

seq1  GCCATTGCCTGCACAGACTCCTACCACAGGGACGCTGACCATCCCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCCTGCACAGACTCCTACCACAGGGACGCTGACCATCCCTGGGC  250

seq1  TCTCATCATCAATTAGAAGGCTGCTAAGCCTTCTCTCCAGCTGACCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCATCAATTAGAAGGCTGCTAAGCCTTCTCTCCAGCTGACCTGAT  300

seq1  CCCTCTGGTGTCTGATCTCTCCTCTCGCAGCTTTTGGTCAGTGCCATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTGTCTGATCTCTCCTCTCGCAGCTTTTGGTCAGTGCCATAGG  350

seq1  CGCCACTCTGTCCTTGCTTCCCACATGCTCCTCATGCAATTTGAAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTCTGTCCTTGCTTCCCACATGCTCCTCATGCAATTTGAAAGTTG  400

seq1  GCTGTGAGGACACACTTGCCTGTCAGTACAGATATGTCCTGATATTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGGACACACTTGCCTGTCAGTACAGATATGTCCTGATATTTGCA  450

seq1  GTCTCTCTGAACGAAGTCTCCATCTCCATGGAGATGTGAGATATATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGAACGAAGTCTCCATCTCCATGGAGATGTGAGATATATCTCC  500

seq1  TCCCTCCTTCCTGCTACCTCTGGTTTGGGACAGAAGACCAGAGTCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTCCTGCTACCTCTGGTTTGGGACAGAAGACCAGAGTCTCCTT  550

seq1  TGTCACCCTCTGCTGTCTTCCTGAGCATCCTGTTAAAAATATTTTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCTCTGCTGTCTTCCTGAGCATCCTGTTAAAAATATTTTGACTG  600

seq1  TTGTCTGTCTTATCTGTCCTGTTTTTCATTTCCCCTTTCCTTTGACCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCTTATCTGTCCTGTTTTTCATTTCCCCTTTCCTTTGACCTTA  650

seq1  GGGAGAATTTATTGAGTTCATCGGGTAGTGATGAGCAAGTCCCATTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATTTATTGAGTTCATCGGGTAGTGATGAGCAAGTCCCATTTGCC  700

seq1  TTGATTTTTCTGTCCTTTATCTTTAGGTGTGTGTGTGTGTGTGTGTG  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTCTGTCCTTTATCTTTAGGTGTGTGTGTGTGTGTGTGTG  747

seq1: chr6_86274696_86275755
seq2: B6Ng01-128G11.g_70_1110 (reverse)

seq1  ACAAAATTGGATGAATCAGCCTGACTTGCTGGGATAAGAAACTGAGGAAG  50
      |||||| |||||||||||| ||||| ||||  ||||   ||||||| |||
seq2  ACAAAA-TGGATGAATCAG-CTGAC-TGCT--GATA--GAACTGAGAAAG  43

seq1  TGGCCCAGACCTGGGCAGAAGTCCCAACCCTACAAGA-GAACAGGTAAAG  99
      ||||||||||  | |    |||||  | ||||||||| ||||| ||||||
seq2  TGGCCCAGACTGGCG----AGTCC--AACCTACAAGAGGAACA-GTAAAG  86

seq1  AAAACATTCTAGCAAGCCCATTCTTCCTGCTATGCCCAGCCCCAGCCTCA  149
       |||||||||||||||||||||||  ||| |||| ||||||| ||| |||
seq2  -AAACATTCTAGCAAGCCCATTCT--CTG-TATG-CCAGCCCAAGCTTCA  131

seq1  GCCCTTGCCCCAGGCCTCCTGTGTATAGATGAGGTGGATGGCTGAGCCAC  199
      | ||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  G-CCTTG-CCCAGG-CTCCTGTGTATAGATGAGGTGGATGGCTGAGCCAC  178

seq1  TGCCCCACCTGGTGAAGTCTGTCAGAAAGCCATCATATGAGGAAGCACTG  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCCCCACCTGGTGAAGTCTGTCAGAAAGCCTTCATATGAGGAAGCACTG  228

seq1  AGAAAGGCCTGACTGCACAAGCCAGAAATACAGAGAAAGCAGTGACTGGC  299
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAAGGGCCTGACTGCACAAGCCAG-AATACAGAGAAAGCAGTGACTGGC  277

seq1  TATAGCATGGGGAATACAGAGAAAGCAGTGACTGGCTAT-AACATGGGGA  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATAGCATGGGGAATACAGAGAAAGCAGTGACTGGCTATAAACATGGGGA  327

seq1  ATACAGAG-AAAGCAGTGACTGGCTATAGCATGGGGAATACAGAG-AAAG  396
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  ATACAGAGAAAAGCAGTGACTGGCTATAGCATGGGGAATACAGAGAAAAG  377

seq1  CAGTGACTGGCTATAACATGGGGAATACAGAGAAAGCAGTGACTGGCTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGGCTATAACATGGGGAATACAGAGAAAGCAGTGACTGGCTAT  427

seq1  AGCATGGGGAATACAGAGAAAGCAGTGACTGGCTATAACATGGGGAATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGGAATACAGAGAAAGCAGTGACTGGCTATAACATGGGGAATAG  477

seq1  AGAAAGCAGGGACTGGCTATAGCATGGGGAATACAGAGAAAGCAGTGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGGGACTGGCTATAGCATGGGGAATACAGAGAAAGCAGTGACT  527

seq1  GGCTATAGCATGGGGAATACAGACAAAGCAGTGACTGGCTATAACATGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGCATGGGGAATACAGACAAAGCAGTGACTGGCTATAACATGGG  577

seq1  GAATACAGAGAAAGCAGTGACTGGCTATAACATGGGGAATACAGAGAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAGAAAGCAGTGACTGGCTATAACATGGGGAATACAGAGAAAG  627

seq1  CAGTGACTGGCTATAGCATGGGGAATACAGAGAAAGCAGTGACTGGCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGGCTATAGCATGGGGAATACAGAGAAAGCAGTGACTGGCTAT  677

seq1  AACATGGGAACTAGGAGCTCAAGAAGAAGACACATGAGAAGAGGAAGGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGAACTAGGAGCTCAAGAAGAAGACACATGAGAAGAGGAAGGAG  727

seq1  CAAGAAAAAGATCTTTGTATTAGGAAGCAGGACGGGGAGGGTATAAGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAGATCTTTGTATTAGGAAGCAGGACGGGGAGGGTATAAGGGA  777

seq1  CGTTCAGAGAGGAAACTGGGAAAGGAGATAGCATTTGAAATGTAAATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGAGAGGAAACTGGGAAAGGAGATAGCATTTGAAATGTAAATGAA  827

seq1  GAAAATATCTAATAAAAAAAGAATTCTAATAATTAAAAGGAAAAAAGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTAATAAAAAAAGAATTCTAATAATTAAAAGGAAAAAAGAAA  877

seq1  AAAAAGAACTTTGAAAACAGAGCCACCTCCAAAGACTCATCCCAACAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACTTTGAAAACAGAGCCACCTCCAAAGACTCATCCCAACAGTT  927

seq1  GGTAGCGGTTTTCTACATCATGGTCGACTCCAGAAACCATGAAAACCAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCGGTTTTCTACATCATGGTCGACTCCAGAAACCATGAAAACCAAT  977

seq1  ACCCTTCAAGTCTCCCTGGATCCCCCATCTCCCTATTGATGACACTTTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCAAGTCTCCCTGGATCCCCCATCTCCCTATTGATGACACTTTGT  1027

seq1  GCAGCTATGAATTC  1060
      ||||||||||||||
seq2  GCAGCTATGAATTC  1041