BAC Information

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BAC

Clone NameB6Ng01-128L10
Chromosome6 (Build37)
Map Location 148,171,457 - 148,272,512
singlet/doubletdoublet
Overlap geneTmtc1
Upstream genePthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2
Downstream gene1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L10.bB6Ng01-128L10.g
ACCDH930490DH930491
length1,1911,085
definitionDH930490|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L10, 5' end.DH930491|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,171,457 - 148,172,673)(148,271,406 - 148,272,512)
sequence
gaattcatgaccctttcactttcaaaacttcaagatgcgaggagaaagct
tgactgacagttttctaggagacaggttagtaatctgacttaagagcaaa
gcatgccacagtttggactagttagcatctaaatggctgctgcacttaga
aagatttcttagataaatgttatgtcttatgggtcagtgacttcatctct
tggaatttatcctcaaaagcaatctcagcctcaaagctctttaatggcct
atgtgtacttctgagtcgggtatgcacccaggctcacaaaggcatctgca
gatgtttccagggttcctcaccgaccagtgtctccccagttctctcctgt
tggacagaaacatgtctgcccctacatgcgaaagagtgaaagctggagat
acttagcaaccttgtgtagttacaccactttgagaaagccctgtgtgtgt
gttgtttaatcttttcattcatctcttcttcccttcctctttgctcccct
tataaccatcttctgaaccatcctctactatatggtctgttctggtatcc
tggctagattgtgttggaagttgggcccaattctctttttcctcaaggcc
cctcaaggtttcctggaggttcctgttagtacctattttttttttgtaaa
gtcctattttgaaaacaataatagagcttaggaaaactaaaagccaaaca
tcttattgttgctttaggcatggtcttcttatagcccaggctgctcttca
attcactgtgtagcagaaggggatggtcttgaattcctgatcctcctgct
tctaacttcctcaaactcatttttaaccatgtatgatctgcttttctgga
aaaggcccagagcaaaagaaaaaaaagaagaaaaaatcttaattccagga
aaggttggctgtctgtcactccttgttcactatggctttctttgcaaata
gaactgagtgacagcttatatagacccaggataggacaaactaacagagc
tttcttggtgtatagtgcaattctgaacatcacaaccctccagctcttct
taaacccagtagggtgtagtcacaggaatgctctgggccttcagctgctc
agttagaacaattgaaattcagattctgattcaaaatatgtgaagcccag
acattgtaacattgagaagaacatgagtctcgtcatgagca
gaattctcatgcaaacaggttcagcaatgaagggcagatatagtgagagt
tggctttgtataatttttgttcaaatcattggctaccacagaaccagcca
ggcacaggagagacacccaaaaatccacacagaaaccaaaagcaaaacaa
agaaacaataacaacaattttaaagttctgaccaaagatcttagcactct
aaaaaaaaaaaaatgcagggctgggaaataacttagttgttatagtacct
tccaagaatgcatgaagacacaagcttggtttctgtgtggtagatatatc
tatctcagtctcctgatggtttcctcaaaatcagaacaaatcacaagctc
aagttctgaggcctggaaaacaagcctagtcctcaggtctgtagggcggt
gacactggagcagtgggggttgggggtagctgcaatgtggcctcactgga
gccctgcagtgggaaggtagccactgcacttcctcacttgaagaggtggc
tccatttattcctgggacttcctttagcattggttcctcaccttactttg
cttcttgctagcccacatcacaatcgtcatttctctactccccaagtagt
agacacctggtgtgcagagattcccacctaacacctctaagcaagacccc
cccacacacacacacagattccttctctctctctctctctctctctctca
acctctctctctctctcttaaaacgatgaggcaatgccagagtaagagcc
actgtcggaaagtggttatctgtggatggacatcccaaccttgttgagaa
caggataagaacagccaaatggacacatcaccccacagacagacagacaa
agaaagaacaccttgctgtagctttccctgtttagatattgaagttttgc
tgacatgtgatctggcccaacttttcttgaagataaattagcatcctggg
gtacaaattgttctacttagacctgcagtgaactgacgtatgctgaatta
gtttgcattttttcaatctttgagcacataggatcactgtgtttatggtg
tcttaacgatgaaatacacccttatagttttaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_148171457_148172673
seq2: B6Ng01-128L10.b_46_1236

seq1  GAATTCATGACCCTTTCACTTTCAAAACTTCAAGATGCGAGGAGAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCCTTTCACTTTCAAAACTTCAAGATGCGAGGAGAAAGCT  50

seq1  TGACTGACAGTTTTCTAGGAGACAGGTTAGTAATCTGACTTAAGAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACAGTTTTCTAGGAGACAGGTTAGTAATCTGACTTAAGAGCAAA  100

seq1  GCATGCCACAGTTTGGACTAGTTAGCATCTAAATGGCTGCTGCACTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACAGTTTGGACTAGTTAGCATCTAAATGGCTGCTGCACTTAGA  150

seq1  AAGATTTCTTAGATAAATGTTATGTCTTATGGGTCAGTGACTTCATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTTAGATAAATGTTATGTCTTATGGGTCAGTGACTTCATCTCT  200

seq1  TGGAATTTATCCTCAAAAGCAATCTCAGCCTCAAAGCTCTTTAATGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTATCCTCAAAAGCAATCTCAGCCTCAAAGCTCTTTAATGGCCT  250

seq1  ATGTGTACTTCTGAGTCGGGTATGCACCCAGGCTCACAAAGGCATCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACTTCTGAGTCGGGTATGCACCCAGGCTCACAAAGGCATCTGCA  300

seq1  GATGTTTCCAGGGTTCCTCACCGACCAGTGTCTCCCCAGTTCTCTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCCAGGGTTCCTCACCGACCAGTGTCTCCCCAGTTCTCTCCTGT  350

seq1  TGGACAGAAACATGTCTGCCCCTACATGCGAAAGAGTGAAAGCTGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAACATGTCTGCCCCTACATGCGAAAGAGTGAAAGCTGGAGAT  400

seq1  ACTTAGCAACCTTGTGTAGTTACACCACTTTGAGAAAGCCCTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAACCTTGTGTAGTTACACCACTTTGAGAAAGCCCTGTGTGTGT  450

seq1  GTTGTTTAATCTTTTCATTCATCTCTTCTTCCCTTCCTCTTTGCTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAATCTTTTCATTCATCTCTTCTTCCCTTCCTCTTTGCTCCCCT  500

seq1  TATAACCATCTTCTGAACCATCCTCTACTATATGGTCTGTTCTGGTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCATCTTCTGAACCATCCTCTACTATATGGTCTGTTCTGGTATCC  550

seq1  TGGCTAGATTGTGTTGGAAGTTGGGCCCAATTCTCTTTTTCCTCAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGATTGTGTTGGAAGTTGGGCCCAATTCTCTTTTTCCTCAAGGCC  600

seq1  CCTCAAGGTTTCCTGGAGGTTCCTGTTAGTACCTATTTTTTTTTTGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGTTTCCTGGAGGTTCCTGTTAGTACCTATTTTTTTTTTGTAAA  650

seq1  GTCCTATTTTGAAAACAATAATAGAGCTTAGGAAAACTAAAAGCCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATTTTGAAAACAATAATAGAGCTTAGGAAAACTAAAAGCCAAACA  700

seq1  TCTTATTGTTGCTTTAGGCATGGTCTTCTTATAGCCCAGGCTGCTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTTGCTTTAGGCATGGTCTTCTTATAGCCCAGGCTGCTCTTCA  750

seq1  ATTCACTGTGTAGCAGAAGGGGATGGTCTTGAATTCCTGATCCTCCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGTGTAGCAGAAGGGGATGGTCTTGAATTCCTGATCCTCCTGCT  800

seq1  TCTAACTTCCTCAAAACTCATTTTTAACCATGTATGATCTGCTTTTCTGG  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCCTC-AAACTCATTTTTAACCATGTATGATCTGCTTTTCTGG  849

seq1  AAAAGGCCCAGAGCAAAAAGAAAAAAAAGAAGAAAAAATCTTAATTCCAG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCCAGAGC-AAAAGAAAAAAAAGAAGAAAAAATCTTAATTCCAG  898

seq1  GAAAGGTTGGCTGTCTGTCACTCCTTGTTCACTATGGCTTTCTTTGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTGGCTGTCTGTCACTCCTTGTTCACTATGGCTTTCTTTGCAAA  948

seq1  TAGAACTGAGTGACAGCCTTATATAAGACCCAGGATAGGACAAACTAACA  1000
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TAGAACTGAGTGACAG-CTTATAT-AGACCCAGGATAGGACAAACTAACA  996

seq1  GGAGGCTTTCCTGGTGTATAGTGCAATTCTGAACATCCACAAACACTCCA  1050
      |   |||||| ||||||||||||||||||||||||| ||| ||| |||||
seq2  G--AGCTTTCTTGGTGTATAGTGCAATTCTGAACAT-CAC-AACCCTCCA  1042

seq1  GCTCTTCTCTAAAACCCAGTAGGGGTGTAGTCAACAGGAATGCTCTGGGC  1100
      |||||  ||| |||||||||| |||||||||| |||||||||||||||||
seq2  GCTCT--TCTTAAACCCAGTA-GGGTGTAGTC-ACAGGAATGCTCTGGGC  1088

seq1  CTCCAGCTTTGCTTCAGTTATAGAACATATGAAATTCAGGATTCTGGAAT  1150
      || ||||  ||| |||||  |||||||  ||||||||| |||||||  ||
seq2  CTTCAGC--TGC-TCAGT--TAGAACAATTGAAATTCA-GATTCTG--AT  1130

seq1  TCAAAATATATGAAAGCCACAGACCATGTAACAATGAGAAGAGAACAATG  1200
      ||||||||| || ||||| |||||  ||||||| |||||  ||||| |||
seq2  TCAAAATATGTG-AAGCC-CAGACATTGTAACATTGAGA--AGAAC-ATG  1175

seq1  AGTCTCTGTCATGAGCA  1217
      |||||| ||||||||||
seq2  AGTCTC-GTCATGAGCA  1191

seq1: chr6_148271406_148272512
seq2: B6Ng01-128L10.g_69_1153 (reverse)

seq1  TATTAAAAC-ATGA-GGTGTATTTCATCAGGTAAAGACACATTAAAACAC  48
      ||||||||| || | |||||||||||||  || |||||||  | ||||||
seq2  TATTAAAACTATAAGGGTGTATTTCATC--GTTAAGACACCAT-AAACAC  47

seq1  AGTGAT-CTATGTG-TCACAAGAATGAACAAAATGCAAACTAATTTCCAG  96
      |||||| ||||||| ||| |||| |||| ||||||||||||||||  |||
seq2  AGTGATCCTATGTGCTCA-AAGATTGAA-AAAATGCAAACTAATT--CAG  93

seq1  CAATTACGTCAGGTTCAACTGCATGGGTCTAAGGTAGAACAATTTTGTAC  146
      ||  ||||||| |||| ||||||  ||||||| ||||||||| |||||||
seq2  CA--TACGTCA-GTTC-ACTGCA--GGTCTAA-GTAGAACAA-TTTGTAC  135

seq1  CACAGGGTTGGCTAATTTATGCTTCAAAGATAAAGTTGTGACAGATCACA  196
      | |||| |  |||||||||| |||| |||| ||||||| | |||||||||
seq2  CCCAGGAT--GCTAATTTAT-CTTC-AAGA-AAAGTTGGGCCAGATCACA  180

seq1  TGGTCAGCAAAACTTCAATATCTTAAAACAGGGAAAAGCTACAGCAAGGT  246
      | |||||||||||||||||||||  |||||||| ||||||||||||||||
seq2  T-GTCAGCAAAACTTCAATATCT--AAACAGGG-AAAGCTACAGCAAGGT  226

seq1  GTTCCTTCTTTGGTCTGTCTGTCTGTGGGGTGATGTGTCCATTTGGCTGT  296
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTTT-GTCTGTCTGTCTGTGGGGTGATGTGTCCATTTGGCTGT  275

seq1  TCTTAATCCTGTTCTCAACAAGGTTGGAATGTCCATCCACAGATAACCAC  346
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTT-ATCCTGTTCTCAACAAGGTTGGGATGTCCATCCACAGATAACCAC  324

seq1  TTTCCGACAGTGGCTCTTACTCTGGCATTGCCTCATCGTTTTGAGAGAGA  396
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCCGACAGTGGCTCTTACTCTGGCATTGCCTCATCGTTTTAAGAGAGA  374

seq1  GAGAGAGAGGTTGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAATCTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGTTGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAATCTGTGT  424

seq1  GTGTGTGTGGGGGGGTCTTGCTTAGAGGTGTTAGGTGGGAATCTCTGCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGGGGGGTCTTGCTTAGAGGTGTTAGGTGGGAATCTCTGCAC  474

seq1  ACCAGGTGTCTACTACTTGGGGAGTAGAGAAATGACGATTGTGATGTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGTCTACTACTTGGGGAGTAGAGAAATGACGATTGTGATGTGGG  524

seq1  CTAGCAAGAAGCAAAGTAAGGTGAGGAACCAATGCTAAAGGAAGTCCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGAAGCAAAGTAAGGTGAGGAACCAATGCTAAAGGAAGTCCCAG  574

seq1  GAATAAATGGAGCCACCTCTTCAAGTGAGGAAGTGCAGTGGCTACCTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATGGAGCCACCTCTTCAAGTGAGGAAGTGCAGTGGCTACCTTCC  624

seq1  CACTGCAGGGCTCCAGTGAGGCCACATTGCAGCTACCCCCAACCCCCACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGGCTCCAGTGAGGCCACATTGCAGCTACCCCCAACCCCCACT  674

seq1  GCTCCAGTGTCACCGCCCTACAGACCTGAGGACTAGGCTTGTTTTCCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGTCACCGCCCTACAGACCTGAGGACTAGGCTTGTTTTCCAGG  724

seq1  CCTCAGAACTTGAGCTTGTGATTTGTTCTGATTTTGAGGAAACCATCAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAACTTGAGCTTGTGATTTGTTCTGATTTTGAGGAAACCATCAGG  774

seq1  AGACTGAGATAGATATATCTACCACACAGAAACCAAGCTTGTGTCTTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGATAGATATATCTACCACACAGAAACCAAGCTTGTGTCTTCAT  824

seq1  GCATTCTTGGAAGGTACTATAACAACTAAGTTATTTCCCAGCCCTGCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTGGAAGGTACTATAACAACTAAGTTATTTCCCAGCCCTGCATT  874

seq1  TTTTTTTTTTTAGAGTGCTAAGATCTTTGGTCAGAACTTTAAAATTGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAGAGTGCTAAGATCTTTGGTCAGAACTTTAAAATTGTTG  924

seq1  TTATTGTTTCTTTGTTTTGCTTTTGGTTTCTGTGTGGATTTTTGGGTGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTCTTTGTTTTGCTTTTGGTTTCTGTGTGGATTTTTGGGTGTC  974

seq1  TCTCCTGTGCCTGGCTGGTTCTGTGGTAGCCAATGATTTGAACAAAAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGCCTGGCTGGTTCTGTGGTAGCCAATGATTTGAACAAAAATT  1024

seq1  ATACAAAGCCAACTCTCACTATATCTGCCCTTCATTGCTGAACCTGTTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGCCAACTCTCACTATATCTGCCCTTCATTGCTGAACCTGTTTG  1074

seq1  CATGAGAATTC  1107
      |||||||||||
seq2  CATGAGAATTC  1085