BAC Information

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BAC

Clone NameB6Ng01-128M04
Chromosome6 (Build37)
Map Location 93,006,299 - 93,160,467
singlet/doubletdoublet
Overlap geneLOC384461
Upstream geneFgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M04.bB6Ng01-128M04.g
ACCDH930526DH930527
length365996
definitionDH930526|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M04, 5' end.DH930527|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,160,103 - 93,160,467)(93,006,299 - 93,007,300)
sequence
ttttcaattaaaatcaattttgggggtcaaacaatagtctcagtaacctc
aatctcaccagcaagctggtctttatatttttcataattaattcctagtt
cccagaatatttcagtcaatggtgcctttgtatcccacacctgcaactcg
gctttttgctttataagcaatggtttctgggagcattatccctctgtatt
ggagaacttcaattaaattgtaatgtgtattatgaagcttatgaaatttt
tgttctccatgcgggttatttcaacatacttagtattagtcttctctcct
tcttcttacctgctcttggcataaagaacatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgt
gaattcattccgtcagggaagcattagtaatgacagtgggagtagcgagc
tagagctcatatcttaaatcgcaagcactgaccagggagagcaagctgag
aataacatgagtctttaaatgctcagagctgacctccagtgacttaattc
cttcaaaacaccttctacacagtcttaaatagcaccaacaactggggacc
aagatttaaatacctgatactatgggtgacattttcattcaaaccattca
agttgtttggccatatttctaattactcctttgaattattttcctgtata
ttctcccatgttatttttattatcgaccatgactgtaggattggtatttt
ttggagatgtcattttatttctcctaatgatctttttatttctgtgctgg
gatttgtatatcgggagttagtttgttcattgacattttgtattagactc
atagcaaggttgcgatcttggtgtcctctgtttgtctggtattggaagat
attacatctatccaggtcttctgtttctttcttggctacagactgatggc
ttcattaggttagttaaggaacctggtacaaatttcctcttacagcatgg
gctgatcttgtgggttaagactgggtggagcaactacagggttctagtca
gacagctggcaggcttctggaactgtgaatcatgcatgatggctgaaggt
tacctggctggattctggcaagtcccaaagggagggagaggggctgagag
gagatggctgtccatggtaagcagccttaggattcaggcaaccctggatc
cctaccacatgtggtggctacagtgccccggtagcaagccacttttcatt
gtaaggaaactacttatcatttttactcactaccatttctttcagaagat
tctcctatattgattctcaacttgagttctttaaaaggaaactaatcata
cttctcagtgttgacttactaaaacagcatgtggatgtctctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93160103_93160467
seq2: B6Ng01-128M04.b_55_419 (reverse)

seq1  ACACACACACACACACACACACACACACACACACATGTTCTTTATGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACATGTTCTTTATGCCAA  50

seq1  GAGCAGGTAAGAAGAAGGAGAGAAGACTAATACTAAGTATGTTGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTAAGAAGAAGGAGAGAAGACTAATACTAAGTATGTTGAAATAA  100

seq1  CCCGCATGGAGAACAAAAATTTCATAAGCTTCATAATACACATTACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATGGAGAACAAAAATTTCATAAGCTTCATAATACACATTACAATT  150

seq1  TAATTGAAGTTCTCCAATACAGAGGGATAATGCTCCCAGAAACCATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAGTTCTCCAATACAGAGGGATAATGCTCCCAGAAACCATTGCT  200

seq1  TATAAAGCAAAAAGCCGAGTTGCAGGTGTGGGATACAAAGGCACCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCAAAAAGCCGAGTTGCAGGTGTGGGATACAAAGGCACCATTGA  250

seq1  CTGAAATATTCTGGGAACTAGGAATTAATTATGAAAAATATAAAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATTCTGGGAACTAGGAATTAATTATGAAAAATATAAAGACCAG  300

seq1  CTTGCTGGTGAGATTGAGGTTACTGAGACTATTGTTTGACCCCCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTGAGATTGAGGTTACTGAGACTATTGTTTGACCCCCAAAATT  350

seq1  GATTTTAATTGAAAA  365
      |||||||||||||||
seq2  GATTTTAATTGAAAA  365

seq1: chr6_93006299_93007300
seq2: B6Ng01-128M04.g_68_1063

seq1  GAATTCATTCCGTCAGGGAAGCATTAGTAATGACAGTGGGAGTAGCGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCGTCAGGGAAGCATTAGTAATGACAGTGGGAGTAGCGAGC  50

seq1  TAGAGCTCATATCTTAAATCGCAAGCACTGACCAGGGAGAGCAAGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCATATCTTAAATCGCAAGCACTGACCAGGGAGAGCAAGCTGAG  100

seq1  AATAACATGAGTCTTTAAATGCTCAGAGCTGACCTCCAGTGACTTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGAGTCTTTAAATGCTCAGAGCTGACCTCCAGTGACTTAATTC  150

seq1  CTTCAAAACACCTTCTACACAGTCTTAAATAGCACCAACAACTGGGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACACCTTCTACACAGTCTTAAATAGCACCAACAACTGGGGACC  200

seq1  AAGATTTAAATACCTGATACTATGGGTGACATTTTCATTCAAACCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAAATACCTGATACTATGGGTGACATTTTCATTCAAACCATTCA  250

seq1  AGTTGTTTGGCCATATTTCTAATTACTCCTTTGAATTATTTTCCTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTGGCCATATTTCTAATTACTCCTTTGAATTATTTTCCTGTATA  300

seq1  TTCTCCCATGTTATTTTTATTATCGACCATGACTGTAGGATTGGTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATGTTATTTTTATTATCGACCATGACTGTAGGATTGGTATTTT  350

seq1  TTGGAGATGTCATTTTATTTCTCCTAATGATCTTTTTATTTCTGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGTCATTTTATTTCTCCTAATGATCTTTTTATTTCTGTGCTGG  400

seq1  GATTTGTATATCGGGAGTTAGTTTGTTCATTGACATTTTGTATTAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTATATCGGGAGTTAGTTTGTTCATTGACATTTTGTATTAGACTC  450

seq1  ATAGCAAGGTTGCGATCTTGGTGTCCTCTGTTTGTCTGGTATTGGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGTTGCGATCTTGGTGTCCTCTGTTTGTCTGGTATTGGAAGAT  500

seq1  ATTACATCTATCCAGGTCTTCTGTTTCTTTCTTGGCTACAGACTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCTATCCAGGTCTTCTGTTTCTTTCTTGGCTACAGACTGATGGC  550

seq1  TTCATTAGGTTAGTTAAGGAACCTGGTACAAATTTCCTCTTACAGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGGTTAGTTAAGGAACCTGGTACAAATTTCCTCTTACAGCATGG  600

seq1  GCTGATCTTGTGGGTTAAGACTGGGTGGAGCAACTACAGGGTTCTAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTTGTGGGTTAAGACTGGGTGGAGCAACTACAGGGTTCTAGTCA  650

seq1  GACAGCTGGCAGGCTTCTGGAACTGTGAATCATGCATGATGGCTGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGCAGGCTTCTGGAACTGTGAATCATGCATGATGGCTGAAGGT  700

seq1  TACCTGGCTGGATTCTGGCAAGTCCCAAAGGGAGGGAGAGGGGCTGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCTGGATTCTGGCAAGTCCCAAAGGGAGGGAGAGGGGCTGAGAG  750

seq1  GAGATGGCTGTCCATGGTAAGCAGCCTTAGGATTCAGGCAACCCTGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTGTCCATGGTAAGCAGCCTTAGGATTCAGGCAACCCTGGATC  800

seq1  CCTACCACATGTGGTGGCTACAGTGCCCCCGGTAGCAAGCCACTTTTCAT  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTACCACATGTGGTGGCTACAGTG-CCCCGGTAGCAAGCCACTTTTCAT  849

seq1  TGTAAGGAAACTACTTATCATTTTTACTCACTACCATTTCTTTCAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGAAACTACTTATCATTTTTACTCACTACCATTTCTTTCAGAAGA  899

seq1  TTCTCCTATATTGATTCTCAAACTTGAAGTTCTTTAAAAGGAAAACTAAT  950
      ||||||||||||||||||| |||||| |||||||||||||| ||||||||
seq2  TTCTCCTATATTGATTCTC-AACTTG-AGTTCTTTAAAAGG-AAACTAAT  946

seq1  CATACTTCTCCAGTGTTGACTTACTAAAACAGCATGTGGATGTCTCATGT  1000
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CATACTTCT-CAGTGTTGACTTACTAAAACAGCATGTGGATGTCTC-TGT  994

seq1  AA  1002
      ||
seq2  AA  996