BAC Information

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BAC

Clone NameB6Ng01-129G02
Chromosome6 (Build37)X (Build37)
Map Location 58,442,306 - 58,442,87113,843,071 - 13,844,144
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828
Downstream geneLOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G02.bB6Ng01-129G02.g
ACCDH930977DH930978
length6271,074
definitionDH930977|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G02, 5' end.DH930978|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,442,306 - 58,442,871)(13,843,071 - 13,844,144)
sequence
tctttatatttttggttgtgagtctagtctttaaaggctaagccatctct
ccagccctaaacagagaattctcaactgaggaaacttgaatggctgagaa
gcacctaaagaaatgtccaatgtccttagtcatcagggaaatgcaaacta
atgcaaacctgtgattccacctcacaccagtcagcatggctaagagcaaa
atctcaggtgacagcagattgtgatgaggatgtggaggaagaagaacact
cctcctggtgggattgcaagctggtacaaccactctggaaatcagtctgg
tggttccttagaaaattgtaaataggacccactttaccactcctgggcat
atacctagaagatgctccaacatgtaataaggacacatgctccactatgt
tcataacagccttacttataatagccagaagctggaaacaacccagatgt
ctgtcaacagagaagtggatacagaaaatatgatacatctacacaatgaa
atactactcaggtatttaaaacaacgatatcatgaaattcttaggcaaat
ggatggaacttggaaatatcatcctgaatgaggtaacccaattacaaaag
aacatatgtgatattgcactcattcat
gaattctcattacttgccaaggtatttactgctagtagtctgctgtactt
gctttttaacacattcactcagcctctggtctacgcagagagctacactg
tcagaaacaactgctccatgaacaggaagaaaagaagggaacatctccaa
gattggaaaagtagtgataatattgggctgcatgaggaatggaggcatat
ggtcctggctctcacagtgatggggacatagaaaagccttggaggatgtg
gataaggaggcctgcatgggaagttgggtgcagacgcaactgatattcac
tccaggcatagatagtgaatatagattgaagaccatatggtcttccttta
tctttgagtgttgtctcacatattcaggggaatttgtacatcttccaaga
atcaggaacagggaaatccctctgatagcccaatgggtataggggttcaa
agttagatacaattttgacttttggaaaataatgtacttttatttgtaca
tgtggattttagagcccatttccctttgtaaatctattcactctgtgtaa
acttcacctagggcatgtttggaacagtaatacaggagaaaacagaacct
caagggtggtttctttacccttctggtaagcagtgtgttaagaaatgaag
gcatagtcttggagagtgttgtctgcttttgataacttaacccacagcca
cagtaactaaaagttgggtctccaatttagtgttacccttttaaccaggt
attttttttttcattattttttcattatctacctgcgaccttctgcttaa
ggcaaggtgccattcagagtagctgtgggtgcagtgtatcagatggaaaa
gtcagtaatgtacatcattagtttccacccacttaaagatgtcaaattaa
ggtttctttacaaggagtaagaaaattatatgaaattttattctttggtt
cctaatcaactgttttaaaccaattcttgtttgaaagaaactgtccctta
ggaagcattgtatgattgtttttacctaaaccctcaatacgcttttgact
gcgagatatgaatatgaaggccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58442306_58442871
seq2: B6Ng01-129G02.b_38_115

seq1  TTTATATTACTTGTGACTATTTTGGTTGTGAGCCTAGCCTTTAACGGCTG  50
      |||||||            ||||||||||||| |||| |||||| |||| 
seq2  TTTATAT------------TTTTGGTTGTGAGTCTAGTCTTTAAAGGCTA  38

seq1  AGCCATCTCTCCAGCCCATTTGTGACTATTTTGAAGGGTGAGTGGAAAGA  100
      |||||||||||||||||      ||  ||| | ||   ||||        
seq2  AGCCATCTCTCCAGCCCTAAACAGAGAATTCTCAA--CTGAG--------  78

seq1  AGACAGCATCTTAAACAAATGGTGCTGGCACAACTGGCAGTTAGCATGTA  150
                                                        
seq2  --------------------------------------------------  78

seq1  GAAGAATGCAAATTGATCCATTCTTATATCCTTGTACAAAGCTCAGGTAT  200
                                                        
seq2  --------------------------------------------------  78

seq1  AAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTTAAACTTATAGA  250
                                                        
seq2  --------------------------------------------------  78

seq1  GTAGAAAGTGGGGAAGACCCTCGAAGATATGGGCACAGGGGAAAAATTCC  300
                                                        
seq2  --------------------------------------------------  78

seq1  TGAACAGAACAGCAATAGTTGTGCTGTAAGATCGACAATAGACAAATGGG  350
                                                        
seq2  --------------------------------------------------  78

seq1  ACCTCATAAAATTGAAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAAG  400
                                                        
seq2  --------------------------------------------------  78

seq1  ACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTAGCAAACCTAAACC  450
                                                        
seq2  --------------------------------------------------  78

seq1  CGATAGGGGCTAATATCCCATATATATAAAGAAAACAAGAAGATGGACTT  500
                                                        
seq2  --------------------------------------------------  78

seq1  CAGAAAAATAAAAATGATCCTATTAAAAAATGAAGTACAGAGGTAACCAA  550
                                                        
seq2  --------------------------------------------------  78

seq1  AGAATTCTCAACTGAG  566
                      
seq2  ----------------  78

seq1: chrX_13843071_13844144
seq2: B6Ng01-129G02.g_68_1141

seq1  GAATTCTCATTACTTGCCAAGGTATTTACTGCTAGTAGTCTGCTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTACTTGCCAAGGTATTTACTGCTAGTAGTCTGCTGTACTT  50

seq1  GCTTTTTAACACATTCACTCAGCCTCTGGTCTACGCAGAGAGCTACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAACACATTCACTCAGCCTCTGGTCTACGCAGAGAGCTACACTG  100

seq1  TCAGAAACAACTGCTCCATGAACAGGAAGAAAAGAAGGGAACATCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAACTGCTCCATGAACAGGAAGAAAAGAAGGGAACATCTCCAA  150

seq1  GATTGGAAAAGTAGTGATAATATTGGGCTGCATGAGGAATGGAGGCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAAAAGTAGTGATAATATTGGGCTGCATGAGGAATGGAGGCATAT  200

seq1  GGTCCTGGCTCTCACAGTGATGGGGACATAGAAAAGCCTTGGAGGATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGCTCTCACAGTGATGGGGACATAGAAAAGCCTTGGAGGATGTG  250

seq1  GATAAGGAGGCCTGCATGGGAAGTTGGGTGCAGACGCAACTGATATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGAGGCCTGCATGGGAAGTTGGGTGCAGACGCAACTGATATTCAC  300

seq1  TCCAGGCATAGATAGTGAATATAGATTGAAGACCATATGGTCTTCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCATAGATAGTGAATATAGATTGAAGACCATATGGTCTTCCTTTA  350

seq1  TCTTTGAGTGTTGTCTCACATATTCAGGGGAATTTGTACATCTTCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTGTTGTCTCACATATTCAGGGGAATTTGTACATCTTCCAAGA  400

seq1  ATCAGGAACAGGGAAATCCCTCTGATAGCCCAATGGGTATAGGGGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAACAGGGAAATCCCTCTGATAGCCCAATGGGTATAGGGGTTCAA  450

seq1  AGTTAGATACAATTTTGACTTTTGGAAAATAATGTACTTTTATTTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATACAATTTTGACTTTTGGAAAATAATGTACTTTTATTTGTACA  500

seq1  TGTGGATTTTAGAGCCCATTTCCCTTTGTAAATCTATTCACTCTGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTTTAGAGCCCATTTCCCTTTGTAAATCTATTCACTCTGTGTAA  550

seq1  ACTTCACCTAGGGCATGTTTGGAACAGTAATACAGGAGAAAACAGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCTAGGGCATGTTTGGAACAGTAATACAGGAGAAAACAGAACCT  600

seq1  CAAGGGTGGTTTCTTTACCCTTCTGGTAAGCAGTGTGTTAAGAAATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGGTTTCTTTACCCTTCTGGTAAGCAGTGTGTTAAGAAATGAAG  650

seq1  GCATAGTCTTGGAGAGTGTTGTCTGCTTTTGATAACTTAACCCACAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCTTGGAGAGTGTTGTCTGCTTTTGATAACTTAACCCACAGCCA  700

seq1  CAGTAACTAAAAGTT-GGTCTCCAATTTAGTGTTACCC-TTTAACCAGGG  748
      ||||||||||||||| |||||||||||||||||||||| |||||||||| 
seq2  CAGTAACTAAAAGTTGGGTCTCCAATTTAGTGTTACCCTTTTAACCAGGT  750

seq1  TATTTTTTTTTCATTATTTTTTCATTATCTACCTGCGACCTTCTGCTT-A  797
        |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTTTTTTTTCATTATTTTTTCATTATCTACCTGCGACCTTCTGCTTAA  800

seq1  GGCAAGGTGCCATTCAGAGTAGCTGTGGGTGCAGTGTATCAGAT-GAAAA  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAAGGTGCCATTCAGAGTAGCTGTGGGTGCAGTGTATCAGATGGAAAA  850

seq1  GTCAGTAATGTACATCAATTAGTTTCCA-CCACTTAAAGATGTCAAATTA  895
      |||||||||||||||| ||||||||||| |||||||||||||||||||| 
seq2  GTCAGTAATGTACATC-ATTAGTTTCCACCCACTTAAAGATGTCAAATT-  898

seq1  AAGGTTTCTTTACAAGGAGT-AGAAAATTATATGAAATTTTATTCTTTGG  944
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGTTTCTTTACAAGGAGTAAGAAAATTATATGAAATTTTATTCTTTGG  948

seq1  TTCCTAATCACTTGTTTTAGAACCAATTC-TGTTTGAAAGAAACTGTCCC  993
      ||||||||||  ||||||| ||||||||| ||||||||||||||||||||
seq2  TTCCTAATCAACTGTTTTA-AACCAATTCTTGTTTGAAAGAAACTGTCCC  997

seq1  TTAGGGTAAAGCATTTGTATGTATTGTTTTATCCTAAACCTCAAATACAC  1043
      |||||   ||||| ||||||| ||||||||  ||||||||   ||||| |
seq2  TTAGG---AAGCA-TTGTATG-ATTGTTTTTACCTAAACCCTCAATACGC  1042

seq1  ATTTGACTGCAAGATATG-ATATGAAGGCTGT  1074
       ||||||||| ||||||| |||||||||| ||
seq2  TTTTGACTGCGAGATATGAATATGAAGGCCGT  1074