BAC Information

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BAC

Clone NameB6Ng01-129J05
Chromosome6 (Build37)
Map Location 141,866,017 - 142,042,453
singlet/doubletdoublet
Overlap geneSlco1a1, EG625716, Slco1a6
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913
Downstream geneSlco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129J05.bB6Ng01-129J05.g
ACCDH931122DH931123
length1,215256
definitionDH931122|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J05, 5' end.DH931123|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,866,017 - 141,867,254)(142,042,178 - 142,042,453)
sequence
gaattccaatgagacaggaaaggtggagttgaactattttccattgctag
tgggtgtgaagtttgatagactggaaaaaacacctgcttatttataatat
aaaaatttgaaattggctatgcaacttgcttagtttgtgtgagtatcata
gcactcatgtacctactggttaaagaatatctattactgcattcgtggat
tttgttaaagacagattgggctcagaatgccaaggaggactgggccgttt
tacacagagaacttcatactctgcagctcagttagctgagctgtagaaaa
tgagtggtaggcaattactctcaattgccaaaacaagaagtctcttcatt
taggcttaataagggaagaagataggaaaggacttgaaaattttttcaga
aaacttaaaattattgttatatttagaagtccttaatgtaactgtcttga
taaaggaatcttacttagaacattgaggttcttggaaccatgactcctag
ggtgtttcttcagaaaaaaaaataatagtggacaaaaatacacctagatg
gcaggagttgcatgggacagtgggtaaacatgcttgcctcaaaggtttga
tgatccaagttcaggctctagagtccaggaatatatgtaaaaaaattaaa
ttaaattaaaagcccaattcagtagtatgcgtctctaattcctccagtga
aataataggagaaaacaacatttcttgcaaccttaggcaggtcagctgga
gtacacaggcagctcagcagcagacataataagaaagtccatacctcaat
tagaagtgaaaggagagaacagattcaccacattctgacctgcctgcatt
cttggaagcacataggagcccacaccatgcacacatgtgcatacatatca
tacactcactatgcacatactactaagaaagaaaggagagaaactaaatg
aagggtttacttaatacctcagaagaccatgtatccagggatggctgcga
gtgagaaagatgaaactgaaatactgactgattaaaagtactgcagcttg
ttgtcacacctcaaggctttcttacacagccccaggattgcgatgagttc
ttgatgacccaatgcagctgcatttggaaacacctgtcaagagaagaatg
ggcctaactcggattatctgccagccgtggatcaaatggagagtgttgat
catgaaggactcaga
aggggcaagttgagttaaccgttatatgtaactcatttatgtgtaataca
ttttattcttatacagtggaacaaggttatcacttctttcttttcctgtg
cttttctgatttcttgcccacatttcctttgcacatctttctctttttcc
aaattcctttctcctttccttctccatttctgcttcctccttctccccca
cacctctcctctcctctctcctctcctctccctccctctctccctctccc
tctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141866017_141867254
seq2: B6Ng01-129J05.b_49_1263

seq1  GAATTCCAATGAGACAGGAAAGGTGGAGTTGAACTATTTTCCATTGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGAGACAGGAAAGGTGGAGTTGAACTATTTTCCATTGCTAG  50

seq1  TGGGTGTGAAGTTTGATAGACTGGAAAAAACACCTGCTTATTTATAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGAAGTTTGATAGACTGGAAAAAACACCTGCTTATTTATAATAT  100

seq1  AAAAATTTGAAATTGGCTATGCAACTTGCTTAGTTTGTGTGAGTATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGAAATTGGCTATGCAACTTGCTTAGTTTGTGTGAGTATCATA  150

seq1  GCACTCATGTACCTACTGGTTAAAGAATATCTATTACTGCATTCGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGTACCTACTGGTTAAAGAATATCTATTACTGCATTCGTGGAT  200

seq1  TTTGTTAAAGACAGATTGGGCTCAGAATGCCAAGGAGGACTGGGCCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAAGACAGATTGGGCTCAGAATGCCAAGGAGGACTGGGCCGTTT  250

seq1  TACACAGAGAACTTCATACTCTGCAGCTCAGTTAGCTGAGCTGTAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAACTTCATACTCTGCAGCTCAGTTAGCTGAGCTGTAGAAAA  300

seq1  TGAGTGGTAGGCAATTACTCTCAATTGCCAAAACAAGAAGTCTCTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTAGGCAATTACTCTCAATTGCCAAAACAAGAAGTCTCTTCATT  350

seq1  TAGGCTTAATAAGGGAAGAAGATAGGAAAGGACTTGAAAATTTTTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTAATAAGGGAAGAAGATAGGAAAGGACTTGAAAATTTTTTCAGA  400

seq1  AAACTTAAAATTATTGTTATATTTAGAAGTCCTTAATGTAACTGTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAAATTATTGTTATATTTAGAAGTCCTTAATGTAACTGTCTTGA  450

seq1  TAAAGGAATCTTACTTAGAACATTGAGGTTCTTGGAACCATGACTCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATCTTACTTAGAACATTGAGGTTCTTGGAACCATGACTCCTAG  500

seq1  GGTGTTTCTTCAGAAAAAAAAATAATAGTGGACAAAAATACACCTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCTTCAGAAAAAAAAATAATAGTGGACAAAAATACACCTAGATG  550

seq1  GCAGGAGTTGCATGGGACAGTGGGTAAACATGCTTGCCTCAAAGGTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTGCATGGGACAGTGGGTAAACATGCTTGCCTCAAAGGTTTGA  600

seq1  TGATCCAAGTTCAGGCTCTAGAGTCCAGGAATATATGTAAAAAAATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAGTTCAGGCTCTAGAGTCCAGGAATATATGTAAAAAAATTAAA  650

seq1  TTAAATTAAAAGCCCAATTCAGTAGTATGCGTCTCTAATTCCTCCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAAAGCCCAATTCAGTAGTATGCGTCTCTAATTCCTCCAGTGA  700

seq1  AATAATAGGAGAAAACAACATTTCTTGCAACCTTAGGCAGGTCAGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGGAGAAAACAACATTTCTTGCAACCTTAGGCAGGTCAGCTGGA  750

seq1  GTACACAGGCAGCTCAGCAGCAGACATAATAAGAAAGTCCATACCTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGGCAGCTCAGCAGCAGACATAATAAGAAAGTCCATACCTCAAT  800

seq1  TAGAAGTGAAAGGAGAGAACAGATTCACCAACATTCTGACCTGCCTGCAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGAAGTGAAAGGAGAGAACAGATTCACC-ACATTCTGACCTGCCTGCAT  849

seq1  TCTTGGAAGCACATAGGAGCCCACACCATGCACACATGTGCATACATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAGCACATAGGAGCCCACACCATGCACACATGTGCATACATATC  899

seq1  ATACACTCACTATGCACATACTACTAAGAAAGAAA-GAGAGAAACTAAAT  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATACACTCACTATGCACATACTACTAAGAAAGAAAGGAGAGAAACTAAAT  949

seq1  GAAGGGTTTACTTAATACCTCAGAAGAACCATGTATCCAGGGATGGCTGC  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGGGTTTACTTAATACCTCAGAAG-ACCATGTATCCAGGGATGGCTGC  998

seq1  GAGTGAG-AAGATGAAACTGGAAAATACTGACTTGATTAAAAAGTACTGC  1048
      ||||||| ||||||||||||  |||||||||| ||||| |||||||||||
seq2  GAGTGAGAAAGATGAAACTG--AAATACTGAC-TGATT-AAAAGTACTGC  1044

seq1  AGCTTGTTGTCACA-CTCAGGGCCTTTCTTACACAGCCCCAGGACTGCAG  1097
      |||||||||||||| |||| || ||||||||||||||||||||| ||| |
seq2  AGCTTGTTGTCACACCTCAAGG-CTTTCTTACACAGCCCCAGGATTGC-G  1092

seq1  ATGAGTTTCCTGATGACCCAATGCAGCTGCAATTTTGAAACACCTGTCAA  1147
      ||||| ||| |||||||||||||||||||| |||| ||||||||||||||
seq2  ATGAG-TTCTTGATGACCCAATGCAGCTGC-ATTTGGAAACACCTGTCAA  1140

seq1  -AGAAGAAAGATATTGGGCTTAAACCTTCAGTATTATCTGCACAGCCAGT  1196
       |||||||      ||||| |||  |    | ||||||||| |||||   
seq2  GAGAAGAA------TGGGCCTAACTC----GGATTATCTGC-CAGCC--G  1177

seq1  TGGATCAAAATGGAGAGTGTTGGATCAATGATATGACTCAGA  1238
      |||||| |||||||||||||| |||| |||| | ||||||||
seq2  TGGATC-AAATGGAGAGTGTT-GATC-ATGA-AGGACTCAGA  1215

seq1: chr6_142042178_142042453
seq2: B6Ng01-129J05.g_76_331 (reverse)

seq1  GGGAGAGGGGAGGAGAGGAGGGGAGGGGGAGAGGGAGAGAGGGAGGGAGA  50
                          ||||| ||||||||||||||||||||||||
seq2  --------------------GGGAGAGGGAGAGGGAGAGAGGGAGGGAGA  30

seq1  GGAGAGGAGAGAGGAGAGGAGAGGTGTGGGGGAGAAGGAGGAAGCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGAGGAGAGGAGAGGTGTGGGGGAGAAGGAGGAAGCAGAAA  80

seq1  TGGAGAAGGAAAGGAGAAAGGAATTTGGAAAAAGAGAAAGATGTGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGAAAGGAGAAAGGAATTTGGAAAAAGAGAAAGATGTGCAAAG  130

seq1  GAAATGTGGGCAAGAAATCAGAAAAGCACAGGAAAAGAAAGAAGTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGGGCAAGAAATCAGAAAAGCACAGGAAAAGAAAGAAGTGATAA  180

seq1  CCTTGTTCCACTGTATAAGAATAAAATGTATTACACATAAATGAGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCCACTGTATAAGAATAAAATGTATTACACATAAATGAGTTACA  230

seq1  TATAACGGTTAACTCAACTTGCCCCT  276
      ||||||||||||||||||||||||||
seq2  TATAACGGTTAACTCAACTTGCCCCT  256